Rroxscaffold_1G00064350

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001608
Physical Location & Seq
Forward (+)
86149567 .. 86152164
2598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00064350.1

Sequence Viewer

Length: 426 bp
ATGTGGTATGTGATATCTCAAAATGAGCCATCACTTCTTCCAATATCCTTGGTAGGCGATCTTGCTCTTGGAGAATTGGTTCGATTCGAAATTTTCAAGCTCGGATACAAGAGTATGTTGAAGCTGCAAGCTTCGTCAATTCTAGAGGCAGTGAGAGATAAAGAAGGGATTCCTGCGTTGGAAGATGTGGGTGAAGGAGTAATAAGTGAGGAAAAGATAGTGGGGAGGGAGTTGTTGGAGCTTTTGAGAGATGTTAAGGACCATTTCATGAAGGCCTATGATTCTGGTTTGGATGTTTCAAGGATGCTAGAGTCTAACATGGTTCAGATGCTATCTGCATTGGAGGAGATTGAAGATGTAGAACTGTTAAGATTGCACCTCTTTGTGGCCCAACTTGCCCTTGTTCAAACATTGTATTCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

141

Amino Acids

15.87

Weight (kDa)

4.55

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 78 - 116 5.6e-06 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 385
AgsI TTSAA 5 cut(s) 97, 121, 300, 353, 407
AloI GAACNNNNNNTCC 2 cut(s) 63, 95
AluBI AGCT 4 cut(s) 100, 124, 131, 241
AluI AGCT 4 cut(s) 100, 124, 131, 241
AoxI GGCC 2 cut(s) 273, 387
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 90
Asp700I GAANNNNTTC 2 cut(s) 78, 168
AspS9I GGNCC 2 cut(s) 259, 388
AsuHPI GGTGA 1 cut(s) 203
AsuII TTCGAA 1 cut(s) 87
AvaII GGWCC 1 cut(s) 259
BaeI ACNNNNGTAYC 2 cut(s) 97, 130
BbvI GCAGC 1 cut(s) 111
BccI CCATC 1 cut(s) 37
BciVI GTATCC 1 cut(s) 98
BfaI CTAG 2 cut(s) 143, 308
BfuI GTATCC 1 cut(s) 98
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 2 cut(s) 259, 388
BmsI GCATC 2 cut(s) 294, 318
Bpu14I TTCGAA 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 385
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 2 cut(s) 298, 309
BseLI CCNNNNNNNGG 1 cut(s) 385
BseRI GAGGAG 1 cut(s) 359
BseXI GCAGC 1 cut(s) 111
BshFI GGCC 2 cut(s) 275, 389
BslI CCNNNNNNNGG 1 cut(s) 385
BsnI GGCC 2 cut(s) 275, 389
Bsp119I TTCGAA 1 cut(s) 87
Bsp143I GATC 1 cut(s) 58
BspANI GGCC 2 cut(s) 275, 389
BspHI TCATGA 1 cut(s) 267
BspT104I TTCGAA 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 366
BstBI TTCGAA 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 423
BstF5I GGATG 2 cut(s) 298, 309
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstV1I GCAGC 1 cut(s) 111
BsuI GTATCC 1 cut(s) 98
BsuRI GGCC 2 cut(s) 275, 389
BtsCI GGATG 2 cut(s) 298, 309
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 129
CciI TCATGA 1 cut(s) 267
Cfr13I GGNCC 2 cut(s) 259, 388
CviAII CATG 2 cut(s) 268, 319
CviJI RGCY 7 cut(s) 28, 100, 124, 131, 241, 275, 389
CviKI_1 RGCY 7 cut(s) 28, 100, 124, 131, 241, 275, 389
DdeI CTNAG 1 cut(s) 423
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 48
Eco147I AGGCCT 1 cut(s) 275
Eco32I GATATC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 259
EcoRV GATATC 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 271, 322
FaiI YATR 5 cut(s) 9, 116, 269, 279, 320
FatI CATG 2 cut(s) 267, 318
Fnu4HI GCNGC 1 cut(s) 125
FokI GGATG 2 cut(s) 305, 316
Fsp4HI GCNGC 1 cut(s) 125
FspBI CTAG 2 cut(s) 143, 308
GluI GCNGC 1 cut(s) 125
HaeIII GGCC 2 cut(s) 275, 389
Hin1II CATG 2 cut(s) 271, 322
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 4 cut(s) 84, 169, 281, 311
HphI GGTGA 1 cut(s) 203
Hpy188I TCNGA 2 cut(s) 104, 327
Hpy188III TCNNGA 2 cut(s) 143, 268
HpyAV CCTTC 3 cut(s) 158, 188, 265
HpyCH4III ACNGT 1 cut(s) 366
HpyCH4V TGCA 3 cut(s) 127, 338, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 423
Hsp92II CATG 2 cut(s) 271, 322
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 2 cut(s) 186, 270
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 2 cut(s) 294, 318
MaeI CTAG 2 cut(s) 143, 308
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 3 cut(s) 29, 194, 365
MluCI AATT 3 cut(s) 74, 90, 138
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 2 cut(s) 159, 216
MnlI CCTC 5 cut(s) 139, 202, 219, 337, 389
MroXI GAANNNNTTC 2 cut(s) 78, 168
MseI TTAA 2 cut(s) 255, 368
MwoI GCNNNNNNNGC 1 cut(s) 395
NdeII GATC 1 cut(s) 58
NlaIII CATG 2 cut(s) 271, 322
NspV TTCGAA 1 cut(s) 87
PagI TCATGA 1 cut(s) 267
PceI AGGCCT 1 cut(s) 275
PdmI GAANNNNTTC 2 cut(s) 78, 168
PfeI GAWTC 3 cut(s) 84, 169, 281
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PspPI GGNCC 2 cut(s) 259, 388
SaqAI TTAA 2 cut(s) 255, 368
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 2 cut(s) 259, 388
SchI GAGTC 1 cut(s) 320
SetI ASST 5 cut(s) 102, 126, 133, 243, 381
SfaNI GCATC 2 cut(s) 294, 318
SfuI TTCGAA 1 cut(s) 87
SinI GGWCC 1 cut(s) 259
Sse9I AATT 3 cut(s) 74, 90, 138
SseBI AGGCCT 1 cut(s) 275
SspMI CTAG 2 cut(s) 143, 308
StuI AGGCCT 1 cut(s) 275
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 366
TaqI TCGA 2 cut(s) 82, 87
TasI AATT 3 cut(s) 74, 90, 138
TfiI GAWTC 3 cut(s) 84, 169, 281
Tru1I TTAA 2 cut(s) 255, 368
Tru9I TTAA 2 cut(s) 255, 368
TscAI CASTG 1 cut(s) 156
TseI GCWGC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 256, 284
TspRI CASTG 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 1 cut(s) 90
XbaI TCTAGA 1 cut(s) 142
XmnI GAANNNNTTC 2 cut(s) 78, 168
XspI CTAG 2 cut(s) 143, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.