Rh6DG238200

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001608
Physical Location & Seq
Reverse (-)
42408186 .. 42425230
17045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG238200.1

Sequence Viewer

Length: 459 bp
ATGTCGACCAAACTTGCTAGAATTTCGTTTGGCAGAATCAAAGCGCCTGATAGAGAGCATGTATGGCTTGCACCACAGGCTTCAAAATTGTTGACTGAGGACTGCATGGCATGTGTTGATCTTCTTGAAGTCATGCTGGCAGTGAGAGATAAAGAAGGGATTCATGCGTTAGAAGATGTGGGTGAAGGAGTAATAAGTGAGGAAAAGATAGTGGGGAGTGAGTTGTTGGAGCTTTTGAGAGATGTTAAGGACCATTTCATGAAGGCCTATGATTCTGGTTTGGATGTTTCAAGGATGCTAGAGTCTAACATGGTTCAGATGCTATCTGCATTGGAGGAGATTGAAGGTCCAAACAAATATGATCCTCTGGTACCTAAGATTGCTCACATGAACAACCGCAAAGTCATTGTCTGTGACAACGACACCAGAATTTCATTTTGGATCATTCATGGAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

152

Amino Acids

17.12

Weight (kDa)

5.1

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 75 - 116 3.1e-06 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 370
AccB1I GGYRCC 1 cut(s) 370
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 397
AclWI GGATC 2 cut(s) 356, 449
AcsI RAATTY 2 cut(s) 21, 429
AfaI GTAC 1 cut(s) 372
AgsI TTSAA 4 cut(s) 84, 128, 291, 344
AjuI GAANNNNNNNTTGG 2 cut(s) 421, 453
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
AlwI GGATC 2 cut(s) 356, 449
AoxI GGCC 1 cut(s) 264
ApoI RAATTY 2 cut(s) 21, 429
ArsI GACNNNNNNTTYG 2 cut(s) 393, 425
Asp700I GAANNNNTTC 1 cut(s) 159
Asp718I GGTACC 1 cut(s) 370
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 250, 347
AsuHPI GGTGA 1 cut(s) 194
AvaII GGWCC 2 cut(s) 250, 347
BanI GGYRCC 1 cut(s) 370
BfaI CTAG 2 cut(s) 18, 299
BfoI RGCGCY 1 cut(s) 47
Bme18I GGWCC 2 cut(s) 250, 347
BmgT120I GGNCC 2 cut(s) 250, 347
BmiI GGNNCC 1 cut(s) 372
BmsI GCATC 2 cut(s) 285, 309
BseGI GGATG 2 cut(s) 289, 300
BseMII CTCAG 1 cut(s) 87
BseRI GAGGAG 1 cut(s) 350
BshFI GGCC 1 cut(s) 266
BshNI GGYRCC 1 cut(s) 370
BsnI GGCC 1 cut(s) 266
Bsp143I GATC 3 cut(s) 118, 361, 441
BspACI CCGC 1 cut(s) 397
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 1 cut(s) 88
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 372
BspPI GGATC 2 cut(s) 356, 449
BspT107I GGYRCC 1 cut(s) 370
BssMI GATC 3 cut(s) 118, 361, 441
BstC8I GCNNGC 2 cut(s) 69, 138
BstDEI CTNAG 2 cut(s) 96, 375
BstF5I GGATG 2 cut(s) 289, 300
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 3 cut(s) 121, 364, 444
BstMBI GATC 3 cut(s) 118, 361, 441
BstMWI GCNNNNNNNGC 2 cut(s) 64, 77
BstNSI RCATGY 2 cut(s) 62, 114
BsuRI GGCC 1 cut(s) 266
BtsCI GGATG 2 cut(s) 289, 300
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 69, 138
CciI TCATGA 1 cut(s) 258
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 2 cut(s) 250, 347
Csp6I GTAC 1 cut(s) 371
CviAII CATG 9 cut(s) 59, 106, 111, 133, 164, 259, 310, 388, 449
CviJI RGCY 4 cut(s) 67, 80, 232, 266
CviKI_1 RGCY 4 cut(s) 67, 80, 232, 266
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 2 cut(s) 96, 375
DpnI GATC 3 cut(s) 120, 363, 443
DpnII GATC 3 cut(s) 118, 361, 441
Eco147I AGGCCT 1 cut(s) 266
Eco47I GGWCC 2 cut(s) 250, 347
FaeI CATG 9 cut(s) 62, 109, 114, 136, 167, 262, 313, 391, 452
FatI CATG 9 cut(s) 58, 105, 110, 132, 163, 258, 309, 387, 448
FblI GTMKAC 1 cut(s) 5
FokI GGATG 2 cut(s) 296, 307
FspBI CTAG 2 cut(s) 18, 299
GlaI GCGC 1 cut(s) 45
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 1 cut(s) 266
HhaI GCGC 1 cut(s) 46
Hin1II CATG 9 cut(s) 62, 109, 114, 136, 167, 262, 313, 391, 452
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HincII GTYRAC 2 cut(s) 6, 93
HindII GTYRAC 2 cut(s) 6, 93
HinfI GANTC 4 cut(s) 36, 160, 272, 302
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 2 cut(s) 6, 93
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 2 cut(s) 125, 259
Hpy8I GTNNAC 2 cut(s) 6, 93
HpyAV CCTTC 4 cut(s) 149, 179, 256, 338
HpyCH4V TGCA 3 cut(s) 71, 105, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 77
HpyF3I CTNAG 2 cut(s) 96, 375
Hsp92II CATG 9 cut(s) 62, 109, 114, 136, 167, 262, 313, 391, 452
HspAI GCGC 1 cut(s) 44
KpnI GGTACC 1 cut(s) 374
Kzo9I GATC 3 cut(s) 118, 361, 441
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 6 cut(s) 60, 62, 122, 261, 353, 439
LweI GCATC 2 cut(s) 285, 309
MaeI CTAG 2 cut(s) 18, 299
MaeIII GTNAC 1 cut(s) 413
MalI GATC 3 cut(s) 120, 363, 443
MboI GATC 3 cut(s) 118, 361, 441
MboII GAAGA 2 cut(s) 113, 185
MluCI AATT 3 cut(s) 21, 86, 429
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 4 cut(s) 91, 193, 328, 375
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 2 cut(s) 246, 457
MwoI GCNNNNNNNGC 2 cut(s) 64, 77
NdeII GATC 3 cut(s) 118, 361, 441
NlaIII CATG 9 cut(s) 62, 109, 114, 136, 167, 262, 313, 391, 452
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 1 cut(s) 413
NspI RCATGY 2 cut(s) 62, 114
PagI TCATGA 1 cut(s) 258
PceI AGGCCT 1 cut(s) 266
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 3 cut(s) 36, 160, 272
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 2 cut(s) 250, 347
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 246, 457
Sau3AI GATC 3 cut(s) 118, 361, 441
Sau96I GGNCC 2 cut(s) 250, 347
SchI GAGTC 1 cut(s) 311
SetI ASST 3 cut(s) 234, 349, 376
SfaNI GCATC 2 cut(s) 285, 309
SinI GGWCC 2 cut(s) 250, 347
Sse9I AATT 3 cut(s) 21, 86, 429
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 1 cut(s) 397
SspMI CTAG 2 cut(s) 18, 299
StuI AGGCCT 1 cut(s) 266
TaqI TCGA 1 cut(s) 5
TasI AATT 3 cut(s) 21, 86, 429
TfiI GAWTC 3 cut(s) 36, 160, 272
Tru1I TTAA 2 cut(s) 246, 457
Tru9I TTAA 2 cut(s) 246, 457
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 6 cut(s) 152, 247, 275, 404, 423, 437
TspRI CASTG 1 cut(s) 147
VpaK11BI GGWCC 2 cut(s) 250, 347
XapI RAATTY 2 cut(s) 21, 429
XceI RCATGY 2 cut(s) 62, 114
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 2 cut(s) 18, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.