Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Reverse (-)

38372160 .. 38374074

Gene Structure 1915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G016950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAGGAGCTTGGATCAGTTCAAGTCCCTATCCAAATCGGTCTCAGAAGGACCTCCGAGGACGTTCGCCTACTCTTCACGTCCGCCGGAGTCGACTTTGTTGGGAAGCTTGGCGAATTTGAAGCTCACCGCAGAGAAATTGGTGAAGGAGCAAGCTTCTGTGAAAACAGATCTGGAAATGGCATCTATAAAATCTAAGCAAAATTACCATCCAGGTCAATTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

75

Amino Acids

8.3

Weight (kDa)

9.63

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	2 cut(s)	83, 129
AclWI	GGATC	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	22, 121
AjiI	CACGTC	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	4 cut(s)	9, 108, 124, 155
AluI	AGCT	4 cut(s)	9, 108, 124, 155
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	118, 154
AvaII	GGWCC	1 cut(s)	50
BccI	CCATC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	46
BglII	AGATCT	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	50
BmgBI	CACGTC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	10
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	10
Bso31I	GGTCTC	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	13, 169
BspACI	CCGC	2 cut(s)	83, 129
BspCNI	CTCAG	1 cut(s)	56
BspPI	GGATC	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	2 cut(s)	13, 169
Bst2UI	CCWGG	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	43, 195
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	2 cut(s)	16, 172
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	2 cut(s)	13, 169
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	50
CviJI	RGCY	4 cut(s)	9, 108, 124, 155
CviKI_1	RGCY	4 cut(s)	9, 108, 124, 155
DdeI	CTNAG	2 cut(s)	43, 195
DpnI	GATC	2 cut(s)	15, 171
DpnII	GATC	2 cut(s)	13, 169
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	211
FaiI	YATR	2 cut(s)	188, 226
FaqI	GGGAC	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	92
FokI	GGATG	1 cut(s)	195
HapII	CCGG	1 cut(s)	86
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HindIII	AAGCTT	2 cut(s)	106, 153
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	2 cut(s)	118, 154
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	2 cut(s)	46, 57
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	2 cut(s)	41, 139
HpyCH4IV	ACGT	2 cut(s)	62, 79
HpyF3I	CTNAG	2 cut(s)	43, 195
HpySE526I	ACGT	2 cut(s)	62, 79
Kzo9I	GATC	2 cut(s)	13, 169
LmnI	GCTCC	2 cut(s)	6, 148
LpnPI	CCDG	3 cut(s)	99, 158, 198
LweI	GCATC	1 cut(s)	191
MaeII	ACGT	2 cut(s)	62, 79
MalI	GATC	2 cut(s)	15, 171
MboI	GATC	2 cut(s)	13, 169
MboII	GAAGA	1 cut(s)	66
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	4 cut(s)	115, 137, 202, 218
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	2 cut(s)	51, 63
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
NdeII	GATC	2 cut(s)	13, 169
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	169
SalI	GTCGAC	1 cut(s)	91
Sau3AI	GATC	2 cut(s)	13, 169
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	8 cut(s)	11, 55, 65, 82, 110, 126, 157, 217
SfaNI	GCATC	1 cut(s)	191
SgeI	CNNG	9 cut(s)	22, 34, 69, 90, 98, 121, 164, 185, 224
SinI	GGWCC	1 cut(s)	50
Sse9I	AATT	4 cut(s)	115, 137, 202, 218
SsiI	CCGC	2 cut(s)	83, 129
StyD4I	CCNGG	1 cut(s)	211
TaiI	ACGT	2 cut(s)	65, 82
TaqI	TCGA	1 cut(s)	92
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	4 cut(s)	115, 137, 202, 218
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.