Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Forward (+)

22704994 .. 22706789

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007907

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCGAGTTCCAAAGATGCAGAAGCTAGGGTTTTCGAGCATGAGGAGCTTGGATCAGTTCAAGTCCCTCTCCAAATCGTTCTCAGGAGGACCTCCAAAAGACCTTCGCCTACTCTTCACGTCTGTCGGAGTCGACCTTGTTGGGATGCTTGGCAAATTTGAAGCTCACCGTAGGATACAAGAGTATGTTGAAGCTGCAAGCTTCTCAGCTGCCATAAGGTTGTTTGTAGCAAGACATTCCTCACCATATTCACCATTTCTAACTACATTTCCTTCTGTGAATCTTGAAGTGAGAGATAAAGAAGGGATTCCTGCGTTGGAAGATGTGGGTGAAGGAGTAATAAGTGAGGAAAAGATAGTGGGGAGGGAGTTGTTGGAGCTTTTGAGAGATTGTAAGGACCATTTCATGAAGGCCTATGATTCTGGTTTGGATGTTTCAAGGATGCTAGAGACTAACATGGTTCAGATGCTATCTGCATTGGAGGAGATTGAAGAAGGCATTACAGAGAACGTAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

173

Amino Acids

19.25

Weight (kDa)

5.31

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AclWI	GGATC	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	155
AgsI	TTSAA	6 cut(s)	61, 161, 191, 287, 438, 491
AjiI	CACGTC	1 cut(s)	120
AluBI	AGCT	7 cut(s)	25, 48, 164, 194, 201, 209, 379
AluI	AGCT	7 cut(s)	25, 48, 164, 194, 201, 209, 379
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	60
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	2 cut(s)	194, 209
ApoI	RAATTY	1 cut(s)	155
Asp700I	GAANNNNTTC	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	89, 397
AsuHPI	GGTGA	4 cut(s)	158, 234, 243, 341
AvaII	GGWCC	2 cut(s)	89, 397
BaeI	ACNNNNGTAYC	2 cut(s)	167, 200
BbvI	GCAGC	2 cut(s)	181, 196
BciVI	GTATCC	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	2 cut(s)	26, 446
BfuI	GTATCC	1 cut(s)	168
BisI	GCNGC	2 cut(s)	195, 210
BlsI	GCNGC	2 cut(s)	196, 211
Bme18I	GGWCC	2 cut(s)	89, 397
BmgBI	CACGTC	1 cut(s)	120
BmgT120I	GGNCC	2 cut(s)	89, 397
BmsI	GCATC	4 cut(s)	6, 135, 432, 456
BseGI	GGATG	3 cut(s)	150, 436, 447
BseMII	CTCAG	2 cut(s)	96, 219
BseRI	GAGGAG	2 cut(s)	58, 497
BseXI	GCAGC	2 cut(s)	181, 196
BshFI	GGCC	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	413
Bsp143I	GATC	1 cut(s)	52
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	2 cut(s)	95, 218
BspHI	TCATGA	1 cut(s)	405
BspPI	GGATC	1 cut(s)	60
BssMI	GATC	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	170
Bst6I	CTCTTC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	2 cut(s)	82, 205
BstF5I	GGATG	3 cut(s)	150, 436, 447
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	181, 196
BsuI	GTATCC	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	413
BtrI	CACGTC	1 cut(s)	120
BtsCI	GGATG	3 cut(s)	150, 436, 447
Cac8I	GCNNGC	1 cut(s)	199
CciI	TCATGA	1 cut(s)	405
Cfr13I	GGNCC	2 cut(s)	89, 397
CviAII	CATG	4 cut(s)	40, 406, 457, 516
CviJI	RGCY	8 cut(s)	25, 48, 164, 194, 201, 209, 379, 413
CviKI_1	RGCY	8 cut(s)	25, 48, 164, 194, 201, 209, 379, 413
DdeI	CTNAG	2 cut(s)	82, 205
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco147I	AGGCCT	1 cut(s)	413
Eco47I	GGWCC	2 cut(s)	89, 397
EcoO109I	RGGNCCY	1 cut(s)	89
FaeI	CATG	4 cut(s)	43, 409, 460, 519
FaiI	YATR	8 cut(s)	41, 186, 215, 247, 407, 417, 458, 517
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	4 cut(s)	39, 405, 456, 515
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	2 cut(s)	195, 210
FokI	GGATG	3 cut(s)	157, 443, 454
Fsp4HI	GCNGC	2 cut(s)	195, 210
FspBI	CTAG	2 cut(s)	26, 446
GluI	GCNGC	2 cut(s)	195, 210
HaeIII	GGCC	1 cut(s)	413
Hin1II	CATG	4 cut(s)	43, 409, 460, 519
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	4 cut(s)	129, 280, 307, 419
HphI	GGTGA	4 cut(s)	158, 234, 243, 341
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	128, 465
Hpy188III	TCNNGA	3 cut(s)	84, 284, 406
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	6 cut(s)	113, 282, 296, 326, 403, 488
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4IV	ACGT	2 cut(s)	119, 510
HpyCH4V	TGCA	3 cut(s)	19, 197, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	2 cut(s)	82, 205
HpySE526I	ACGT	2 cut(s)	119, 510
Hsp92II	CATG	4 cut(s)	43, 409, 460, 519
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	2 cut(s)	45, 376
LpnPI	CCDG	3 cut(s)	69, 324, 408
Lsp1109I	GCAGC	2 cut(s)	181, 196
LweI	GCATC	4 cut(s)	6, 135, 432, 456
MaeI	CTAG	2 cut(s)	26, 446
MaeII	ACGT	2 cut(s)	119, 510
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	3 cut(s)	106, 332, 503
MluCI	AATT	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	3 cut(s)	106, 297, 354
MnlI	CCTC	8 cut(s)	36, 77, 80, 102, 250, 340, 357, 475
MroXI	GAANNNNTTC	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	45
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	4 cut(s)	43, 409, 460, 519
PagI	TCATGA	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	413
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	3 cut(s)	280, 307, 419
PkrI	GCNGC	2 cut(s)	196, 211
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PpuMI	RGGWCCY	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	89
PspPI	GGNCC	2 cut(s)	89, 397
PspPPI	RGGWCCY	1 cut(s)	89
PvuII	CAGCTG	1 cut(s)	209
SalI	GTCGAC	1 cut(s)	131
SatI	GCNGC	2 cut(s)	195, 210
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	2 cut(s)	89, 397
SchI	GAGTC	1 cut(s)	138
SfaNI	GCATC	4 cut(s)	6, 135, 432, 456
SinI	GGWCC	2 cut(s)	89, 397
Sse9I	AATT	1 cut(s)	155
SseBI	AGGCCT	1 cut(s)	413
SspMI	CTAG	2 cut(s)	26, 446
StuI	AGGCCT	1 cut(s)	413
TaaI	ACNGT	1 cut(s)	170
TaiI	ACGT	2 cut(s)	122, 513
TaqI	TCGA	2 cut(s)	35, 132
TasI	AATT	1 cut(s)	155
TfiI	GAWTC	3 cut(s)	280, 307, 419
TseI	GCWGC	2 cut(s)	194, 209
TspDTI	ATGAA	2 cut(s)	394, 422
VpaK11BI	GGWCC	2 cut(s)	89, 397
XapI	RAATTY	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	2 cut(s)	26, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.