Rh5CG119100

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001608
Physical Location & Seq
Reverse (-)
9821221 .. 9823632
2412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG119100.1

Sequence Viewer

Length: 426 bp
ATGATGAAGGAAAAGATGTGGTATGTGATATCTCAAAATGAGCCATCACTTCTTCCAATATCCTTGGCTTCAAAATTGTTGACTGAGGACTGCAAGGCATGTGTTGATCTTCTTGAAGTCATGCTGGTGGAACATTTGCAGAGATACAAGAGTATGTTGAAGCTGCAAGCTTCTGTCAATTCTGGAGTGAGAGATAAAGAAGGGATTCCTGCGTTGGAAGATGTGGGTAAAGGAGTAATAAGTGAGGAAAAGATAGTGGGGAGGGAGTTGTTGGAGCTTTTGAGAGATGTTAAGGACCATTTCATGAAGGCCTATGATTCTGGTTTGGATGTTTCAAGGATGCTAGAGTCTAACATGGTTCAGATGCTAGCTGCATTGGAGGAGATTGAGGGTGGGGTCATTCTCTTTTTTTACTTGTGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

141

Amino Acids

15.95

Weight (kDa)

4.88

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 90 - 128 1e-05 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 4 cut(s) 72, 116, 160, 336
AluBI AGCT 4 cut(s) 163, 170, 277, 371
AluI AGCT 4 cut(s) 163, 170, 277, 371
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 2 cut(s) 163, 371
Asp700I GAANNNNTTC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 295
AsuNHI GCTAGC 1 cut(s) 367
AvaII GGWCC 1 cut(s) 295
BaeI ACNNNNGTAYC 2 cut(s) 136, 169
BbvI GCAGC 2 cut(s) 150, 358
BccI CCATC 1 cut(s) 52
BfaI CTAG 2 cut(s) 344, 368
BisI GCNGC 2 cut(s) 164, 372
BlsI GCNGC 2 cut(s) 165, 373
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmsI GCATC 2 cut(s) 330, 354
BmtI GCTAGC 1 cut(s) 371
BpmI CTGGAG 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 2 cut(s) 334, 345
BseMII CTCAG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 395
BseXI GCAGC 2 cut(s) 150, 358
BshFI GGCC 1 cut(s) 311
BsnI GGCC 1 cut(s) 311
Bsp143I GATC 1 cut(s) 106
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 76
BspHI TCATGA 1 cut(s) 303
BspOI GCTAGC 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 168, 369
BstDEI CTNAG 1 cut(s) 84
BstF5I GGATG 2 cut(s) 334, 345
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 150, 358
BsuRI GGCC 1 cut(s) 311
BtsCI GGATG 2 cut(s) 334, 345
Cac8I GCNNGC 2 cut(s) 168, 369
CciI TCATGA 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 295
CviAII CATG 4 cut(s) 99, 121, 304, 355
CviJI RGCY 7 cut(s) 43, 68, 163, 170, 277, 311, 371
CviKI_1 RGCY 7 cut(s) 43, 68, 163, 170, 277, 311, 371
DdeI CTNAG 1 cut(s) 84
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 63
Eco147I AGGCCT 1 cut(s) 311
Eco32I GATATC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 295
EcoRV GATATC 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 4 cut(s) 102, 124, 307, 358
FaiI YATR 7 cut(s) 24, 100, 122, 155, 305, 315, 356
FatI CATG 4 cut(s) 98, 120, 303, 354
Fnu4HI GCNGC 2 cut(s) 164, 372
FokI GGATG 2 cut(s) 341, 352
Fsp4HI GCNGC 2 cut(s) 164, 372
FspBI CTAG 2 cut(s) 344, 368
GluI GCNGC 2 cut(s) 164, 372
GsuI CTGGAG 1 cut(s) 204
HaeIII GGCC 1 cut(s) 311
Hin1II CATG 4 cut(s) 102, 124, 307, 358
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 168
HinfI GANTC 3 cut(s) 205, 317, 347
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 363
Hpy188III TCNNGA 3 cut(s) 113, 183, 304
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 2 cut(s) 194, 301
HpyCH4V TGCA 4 cut(s) 93, 139, 166, 374
HpyF3I CTNAG 1 cut(s) 84
Hsp92II CATG 4 cut(s) 102, 124, 307, 358
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 4 cut(s) 110, 168, 222, 306
Lsp1109I GCAGC 2 cut(s) 150, 358
LweI GCATC 2 cut(s) 330, 354
MaeI CTAG 2 cut(s) 344, 368
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 3 cut(s) 44, 101, 230
MluCI AATT 2 cut(s) 74, 178
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 2 cut(s) 195, 252
MnlI CCTC 5 cut(s) 79, 238, 255, 373, 382
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 125
NdeII GATC 1 cut(s) 106
NheI GCTAGC 1 cut(s) 367
NlaIII CATG 4 cut(s) 102, 124, 307, 358
NspI RCATGY 1 cut(s) 102
PagI TCATGA 1 cut(s) 303
PceI AGGCCT 1 cut(s) 311
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 2 cut(s) 205, 317
PkrI GCNGC 2 cut(s) 165, 373
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 2 cut(s) 164, 372
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 1 cut(s) 356
SetI ASST 4 cut(s) 165, 172, 279, 373
SfaNI GCATC 2 cut(s) 330, 354
SinI GGWCC 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 2 cut(s) 74, 178
SseBI AGGCCT 1 cut(s) 311
SspMI CTAG 2 cut(s) 344, 368
StuI AGGCCT 1 cut(s) 311
StyI CCWWGG 1 cut(s) 63
TasI AATT 2 cut(s) 74, 178
TfiI GAWTC 2 cut(s) 205, 317
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseI GCWGC 2 cut(s) 163, 371
TspDTI ATGAA 3 cut(s) 20, 292, 320
VpaK11BI GGWCC 1 cut(s) 295
XceI RCATGY 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 2 cut(s) 344, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.