Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Forward (+)

52743421 .. 52746252

Gene Structure 2832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009432

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGGGTTTCAATTAGAGTTCCAAAAGGTGGAACGATTCAGATCATCGTCGTCGTCCACCTCCAGTAGCTCTCACTACCTCTCCAAGTGCCTCCTCCGAGGCACCGTCGTTCTCCAGGTCCTCTACGGTCACATCCACTTCCCCAACTCCAACGACATCATTTTCGCGCTTGATAGAGAACATGTATGGCTTGCACCACAAGCTTCAAAATTGTTGACTGAGGACTGCATGGCATGTGTTGATCTTCTTGAAGTCATGCTGGTGGAACATTTGCAGAGAAGTAGAAGAAAGAAGAGAGGAGCAGTAGGAGCAGGCATATTACATCAGTGGTGGCAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

114

Amino Acids

12.98

Weight (kDa)

9.22

Isoelectric Point (pI)

63.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	28
AccII	CGCG	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	28
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	11, 207, 251
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	2 cut(s)	69, 203
AluI	AGCT	2 cut(s)	69, 203
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	116
BpmI	CTGGAG	2 cut(s)	46, 98
BsaBI	GATNNNNATC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	63
Bse8I	GATNNNNATC	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	132
BseJI	GATNNNNATC	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	2 cut(s)	83, 312
Bsh1236I	CGCG	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	28
Bsp143I	GATC	2 cut(s)	41, 241
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	2 cut(s)	41, 241
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	106, 128
Bst6I	CTCTTC	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	192, 313
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	2 cut(s)	44, 244
BstMBI	GATC	2 cut(s)	41, 241
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 308
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	2 cut(s)	185, 237
BstSCI	CCNGG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	332
Cac8I	GCNNGC	2 cut(s)	192, 313
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	118
CviAII	CATG	4 cut(s)	182, 229, 234, 256
CviJI	RGCY	3 cut(s)	69, 190, 203
CviKI_1	RGCY	3 cut(s)	69, 190, 203
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	2 cut(s)	43, 243
DpnII	GATC	2 cut(s)	41, 241
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	114
FaeI	CATG	4 cut(s)	185, 232, 237, 259
FaiI	YATR	6 cut(s)	183, 187, 230, 235, 257, 317
FatI	CATG	4 cut(s)	181, 228, 233, 255
FokI	GGATG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	168
GsuI	CTGGAG	2 cut(s)	46, 98
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	4 cut(s)	185, 232, 237, 259
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	1 cut(s)	36
Hpy166II	GTNNAC	2 cut(s)	57, 216
Hpy188I	TCNGA	2 cut(s)	41, 98
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	2 cut(s)	57, 216
Hpy99I	CGWCG	3 cut(s)	52, 55, 110
HpyCH4III	ACNGT	2 cut(s)	106, 128
HpyCH4V	TGCA	3 cut(s)	194, 228, 274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 308
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	4 cut(s)	185, 232, 237, 259
HspAI	GCGC	1 cut(s)	167
Kzo9I	GATC	2 cut(s)	41, 241
LmnI	GCTCC	2 cut(s)	299, 308
LpnPI	CCDG	5 cut(s)	76, 101, 128, 245, 297
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	43, 243
MboI	GATC	2 cut(s)	41, 241
MboII	GAAGA	3 cut(s)	236, 297, 304
MluCI	AATT	2 cut(s)	11, 209
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	8 cut(s)	70, 89, 92, 101, 104, 131, 214, 290
MslI	CAYNNNNRTG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	200, 308
NdeII	GATC	2 cut(s)	41, 241
NlaIII	CATG	4 cut(s)	185, 232, 237, 259
NlaIV	GGNNCC	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	128
NspI	RCATGY	2 cut(s)	185, 237
PciI	ACATGT	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	36
PflMI	CCANNNNNTGG	1 cut(s)	28
PpuMI	RGGWCCY	1 cut(s)	118
PscI	ACATGT	1 cut(s)	181
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	260
Sau3AI	GATC	2 cut(s)	41, 241
Sau96I	GGNCC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	6 cut(s)	30, 62, 71, 81, 120, 205
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	11, 209
StyD4I	CCNGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	106, 128
TasI	AATT	2 cut(s)	11, 209
TfiI	GAWTC	1 cut(s)	36
TscAI	CASTG	1 cut(s)	332
TseFI	GTSAC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	128
TspRI	CASTG	1 cut(s)	332
Van91I	CCANNNNNTGG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	118
XceI	RCATGY	2 cut(s)	185, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.