Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Reverse (-)

17200795 .. 17219709

Gene Structure 18915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G014980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCAGAAGCTATGGTTTCCGAGCATGAGGAGCTTGGATCAGTTCAAGTCCCTCTCCAAATCGGTCTCAGGAGGACCTCCAAAAGACCTTCGCCTATTCTTCACGTCCGCTGGAATCGACCTTGTTGGGATGCTTGGCAAATTTGAAGCTCACCGCAGGGTTATCCCACGACAGCTATGTGACAATGCGGGATTCGACACGACTGATATGCTAAACAAACTAAGACAGAAACACTCGACAGGATTCAGTTCGTATTGGAGTGTTCTTGAAATGATGGAAGCTTGTACCGATAAAGAAGAGGCCTTTAGAGCTGGGTATCTGAAAACAGACCAGCAGTTCTTGAAACAGGCCTTTAGAGCTGGCTTCAAGTATTGTTTACGTTGCTATAATATGTGCATGACTCCTGACATGTCTGCAATGCATCGTGACTCATCTCTGGATCTAAGAGTAGATGGGAGCAAACTCAAAGATATCCTAGAGATTGGAGCTGCCAAAGTTGTTGCAGAGGATTCTTACTATGCCGTCAAAAGGGGTGGTTTTGTTGTGCTGCCAATTGAAATACTACCTCATATCCAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0032991 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

193

Amino Acids

21.91

Weight (kDa)

8.94

Isoelectric Point (pI)

50.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	108, 154, 188
AclWI	GGATC	2 cut(s)	45, 447
AcsI	RAATTY	1 cut(s)	140
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	528
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	6 cut(s)	46, 146, 269, 343, 367, 557
AjiI	CACGTC	1 cut(s)	105
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	8 cut(s)	10, 33, 149, 175, 281, 311, 359, 488
AluI	AGCT	8 cut(s)	10, 33, 149, 175, 281, 311, 359, 488
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	2 cut(s)	45, 447
AoxI	GGCC	2 cut(s)	300, 348
ApeKI	GCWGC	2 cut(s)	488, 547
ApoI	RAATTY	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	475, 534
BccI	CCATC	2 cut(s)	268, 446
BceAI	ACGGC	1 cut(s)	506
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	1 cut(s)	575
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	476
BisI	GCNGC	2 cut(s)	489, 548
BlsI	GCNGC	2 cut(s)	490, 549
Bme1390I	CCNGG	1 cut(s)	575
Bme18I	GGWCC	1 cut(s)	74
BmgBI	CACGTC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	575
BmsI	GCATC	2 cut(s)	120, 430
BsaI	GGTCTC	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	528
Bse3DI	GCAATG	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	575
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	528
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	475, 534
BseYI	CCCAGC	1 cut(s)	311
BshFI	GGCC	2 cut(s)	302, 350
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	528
BsmAI	GTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	302, 350
Bso31I	GGTCTC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	37, 439
BspACI	CCGC	3 cut(s)	108, 154, 188
BspANI	GGCC	2 cut(s)	302, 350
BspCNI	CTCAG	1 cut(s)	80
BspPI	GGATC	2 cut(s)	45, 447
BspTNI	GGTCTC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	423
BssMI	GATC	2 cut(s)	37, 439
Bst2UI	CCWGG	1 cut(s)	575
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	3 cut(s)	67, 221, 443
BstF5I	GGATG	1 cut(s)	135
BstKTI	GATC	2 cut(s)	40, 442
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	2 cut(s)	37, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 308, 356
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	1 cut(s)	573
BstV1I	GCAGC	2 cut(s)	475, 534
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuRI	GGCC	2 cut(s)	302, 350
BtrI	CACGTC	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	285
CspCI	CAANNNNNGTGG	2 cut(s)	514, 549
CviAII	CATG	3 cut(s)	25, 397, 409
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	3 cut(s)	67, 221, 443
DpnI	GATC	2 cut(s)	39, 441
DpnII	GATC	2 cut(s)	37, 439
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco147I	AGGCCT	2 cut(s)	302, 350
Eco31I	GGTCTC	1 cut(s)	70
Eco32I	GATATC	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	573
EcoRV	GATATC	1 cut(s)	472
EcoT22I	ATGCAT	1 cut(s)	423
FaeI	CATG	3 cut(s)	28, 400, 412
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	3 cut(s)	24, 396, 408
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	2 cut(s)	489, 548
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	2 cut(s)	489, 548
FspBI	CTAG	1 cut(s)	476
GluI	GCNGC	2 cut(s)	489, 548
GsaI	CCCAGC	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	302, 350
Hin1II	CATG	3 cut(s)	28, 400, 412
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	6 cut(s)	114, 192, 243, 400, 428, 509
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	21, 321
Hpy188III	TCNNGA	6 cut(s)	69, 266, 340, 404, 425, 437
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	98
HpyCH4IV	ACGT	2 cut(s)	104, 379
HpyCH4V	TGCA	5 cut(s)	4, 396, 416, 421, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 308, 356
HpyF3I	CTNAG	3 cut(s)	67, 221, 443
HpySE526I	ACGT	2 cut(s)	104, 379
Hsp92II	CATG	3 cut(s)	28, 400, 412
Kzo9I	GATC	2 cut(s)	37, 439
LmnI	GCTCC	3 cut(s)	30, 456, 485
Lsp1109I	GCAGC	2 cut(s)	475, 534
LweI	GCATC	2 cut(s)	120, 430
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	2 cut(s)	104, 379
MaeIII	GTNAC	2 cut(s)	179, 425
MalI	GATC	2 cut(s)	39, 441
MboI	GATC	2 cut(s)	37, 439
MboII	GAAGA	2 cut(s)	91, 308
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	1 cut(s)	439
MluCI	AATT	2 cut(s)	140, 552
MlyI	GAGTC	2 cut(s)	394, 422
MnlI	CCTC	7 cut(s)	21, 62, 65, 87, 292, 499, 576
Mph1103I	ATGCAT	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	575
MunI	CAATTG	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	3 cut(s)	30, 308, 356
NdeII	GATC	2 cut(s)	37, 439
NlaIII	CATG	3 cut(s)	28, 400, 412
NmuCI	GTSAC	2 cut(s)	179, 425
NsiI	ATGCAT	1 cut(s)	423
NspI	RCATGY	1 cut(s)	412
PceI	AGGCCT	2 cut(s)	302, 350
PciI	ACATGT	1 cut(s)	408
PfeI	GAWTC	4 cut(s)	114, 192, 243, 509
PkrI	GCNGC	2 cut(s)	490, 549
PleI	GAGTC	2 cut(s)	394, 422
PpsI	GAGTC	2 cut(s)	394, 422
PpuMI	RGGWCCY	1 cut(s)	74
PscI	ACATGT	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	573
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	573
PspPI	GGNCC	1 cut(s)	74
PspPPI	RGGWCCY	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
SatI	GCNGC	2 cut(s)	489, 548
Sau3AI	GATC	2 cut(s)	37, 439
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	2 cut(s)	394, 422
ScrFI	CCNGG	1 cut(s)	575
SfaNI	GCATC	2 cut(s)	120, 430
SinI	GGWCC	1 cut(s)	74
Sse9I	AATT	2 cut(s)	140, 552
SseBI	AGGCCT	2 cut(s)	302, 350
SsiI	CCGC	3 cut(s)	108, 154, 188
SspMI	CTAG	1 cut(s)	476
StuI	AGGCCT	2 cut(s)	302, 350
StyD4I	CCNGG	1 cut(s)	573
TaiI	ACGT	2 cut(s)	107, 382
TaqI	TCGA	3 cut(s)	117, 195, 236
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	2 cut(s)	140, 552
TfiI	GAWTC	4 cut(s)	114, 192, 243, 509
TseFI	GTSAC	2 cut(s)	179, 425
TseI	GCWGC	2 cut(s)	488, 547
Tsp45I	GTSAC	2 cut(s)	179, 425
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	1 cut(s)	412
XspI	CTAG	1 cut(s)	476
Zsp2I	ATGCAT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.