Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Reverse (-)

809417 .. 824404

Gene Structure 14988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G000510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGTGGGTAATCCATTGCTGAATGACATCGCCGATGCTTTCTTGAAGAGTGGAACCATTGGAGCTGCCAAAGTTGTTGCAGAGGATTCTTACTATGCCGTCAAAAGGGGTGGTTTTGTTGTGCTGCCAATTGAAATACTACCTCATATCCAGTCTATCATCAACATTGTGTTACCTTCATTTGCCATAGCTTCCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

66

Amino Acids

6.94

Weight (kDa)

5.5

Isoelectric Point (pI)

59.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	46, 134
AluBI	AGCT	2 cut(s)	65, 191
AluI	AGCT	2 cut(s)	65, 191
ApeKI	GCWGC	2 cut(s)	65, 124
BbvI	GCAGC	2 cut(s)	52, 111
BceAI	ACGGC	1 cut(s)	83
BisI	GCNGC	2 cut(s)	66, 125
BlsI	GCNGC	2 cut(s)	67, 126
BmiI	GGNNCC	1 cut(s)	55
BmsI	GCATC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	52, 111
BslI	CCNNNNNNNGG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	52, 111
BtgZI	GCGATG	1 cut(s)	13
CspCI	CAANNNNNGTGG	2 cut(s)	91, 126
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	2 cut(s)	65, 191
CviKI_1	RGCY	2 cut(s)	65, 191
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
FaeI	CATG	1 cut(s)	201
FaiI	YATR	4 cut(s)	96, 147, 188, 199
FatI	CATG	1 cut(s)	197
Fnu4HI	GCNGC	2 cut(s)	66, 125
Fsp4HI	GCNGC	2 cut(s)	66, 125
GluI	GCNGC	2 cut(s)	66, 125
Hin1II	CATG	1 cut(s)	201
HinfI	GANTC	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	201
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	1 cut(s)	164
Lsp1109I	GCAGC	2 cut(s)	52, 111
LweI	GCATC	1 cut(s)	25
MaeIII	GTNAC	1 cut(s)	171
MboII	GAAGA	1 cut(s)	58
MfeI	CAATTG	1 cut(s)	129
MluCI	AATT	1 cut(s)	129
MnlI	CCTC	2 cut(s)	76, 153
MunI	CAATTG	1 cut(s)	129
NlaIII	CATG	1 cut(s)	201
NlaIV	GGNNCC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	67, 126
PspN4I	GGNNCC	1 cut(s)	55
SatI	GCNGC	2 cut(s)	66, 125
SetI	ASST	4 cut(s)	67, 145, 178, 193
SfaNI	GCATC	1 cut(s)	25
SgeI	CNNG	2 cut(s)	55, 163
Sse9I	AATT	1 cut(s)	129
TasI	AATT	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	86
TseI	GCWGC	2 cut(s)	65, 124
TspDTI	ATGAA	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.