Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Reverse (-)

84464109 .. 84477135

Gene Structure 13027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00062420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGGGTTATTTGGATCGATTCACGTGAAACTCCGTCAACTCGGGAGAGAATTACAATAGAAAGAACAATTGCAATGATGACATTAACTACCGATTGGTCCGTAATTCAGCCGATTGATGCTTGGGGTTTCGTATGTGGTTCCCGAATGGGGTTTCGAATAGAGTTCCAAAAGGTGGAACGATTTAGATCATCATCGTCGTCCACCTCCAATAGCTCTCACTACCTCTCCAAGTGCCTCCTCCGAGGCACCGTCATTCTCCGGGTCCTCTACGGTCACATCCACTTCCCCAACTCCAACGACATCATTTTCGCTTGCATTAAGAGGGCATCCACCATAAAACATGGTGGTATGACATGTGACAGTGGCGAGAAGACTTGTCTACTTCAAGGTCCTTCATGGTTATGGAGGTCTGCATCTACTTTGAGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

144

Amino Acids

16.22

Weight (kDa)

9.4

Isoelectric Point (pI)

58.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	382
AclWI	GGATC	1 cut(s)	23
AcvI	CACGTG	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	150, 175
AflIII	ACRYGT	1 cut(s)	356
AgsI	TTSAA	1 cut(s)	389
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
AlwI	GGATC	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	42
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AspS9I	GGNCC	3 cut(s)	99, 265, 392
AsuC2I	CCSGG	1 cut(s)	263
AsuII	TTCGAA	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	42
AvaII	GGWCC	3 cut(s)	99, 265, 392
BanI	GGYRCC	1 cut(s)	248
BbrPI	CACGTG	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	380
BcnI	CCSGG	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	3 cut(s)	99, 265, 392
BmeT110I	CYCGRG	1 cut(s)	42
BmgT120I	GGNCC	3 cut(s)	99, 265, 392
BmiI	GGNNCC	3 cut(s)	142, 250, 266
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	3 cut(s)	109, 338, 425
BpiI	GAAGAC	1 cut(s)	380
Bpu14I	TTCGAA	1 cut(s)	157
BpuMI	CCSGG	1 cut(s)	263
Bsa29I	ATCGAT	1 cut(s)	18
BsaAI	YACGTR	1 cut(s)	26
BsaBI	GATNNNNATC	2 cut(s)	187, 193
BsaJI	CCNNGG	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 175
Bse3DI	GCAATG	1 cut(s)	81
Bse8I	GATNNNNATC	2 cut(s)	187, 193
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	2 cut(s)	279, 329
BseJI	GATNNNNATC	2 cut(s)	187, 193
BseLI	CCNNNNNNNGG	2 cut(s)	150, 175
BseMI	GCAATG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	230
BshNI	GGYRCC	1 cut(s)	248
BshVI	ATCGAT	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	262
BslI	CCNNNNNNNGG	2 cut(s)	150, 175
BsoBI	CYCGRG	1 cut(s)	42
Bsp119I	TTCGAA	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	15, 188
BspDI	ATCGAT	1 cut(s)	18
BspLI	GGNNCC	3 cut(s)	142, 250, 266
BspPI	GGATC	1 cut(s)	23
BspT104I	TTCGAA	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	2 cut(s)	15, 188
Bst4CI	ACNGT	3 cut(s)	253, 275, 365
BstBAI	YACGTR	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	316
BstF5I	GGATG	2 cut(s)	279, 329
BstKTI	GATC	2 cut(s)	18, 191
BstMBI	GATC	2 cut(s)	15, 188
BstNSI	RCATGY	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	380
Bsu15I	ATCGAT	1 cut(s)	18
BsuTUI	ATCGAT	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	279, 329
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	316
Cfr13I	GGNCC	3 cut(s)	99, 265, 392
ClaI	ATCGAT	1 cut(s)	18
CviAII	CATG	3 cut(s)	344, 357, 399
CviJI	RGCY	2 cut(s)	112, 216
CviKI_1	RGCY	2 cut(s)	112, 216
DpnI	GATC	2 cut(s)	17, 190
DpnII	GATC	2 cut(s)	15, 188
Eco47I	GGWCC	3 cut(s)	99, 265, 392
Eco72I	CACGTG	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	42
EcoO109I	RGGNCCY	2 cut(s)	265, 392
FaeI	CATG	3 cut(s)	347, 360, 402
FaiI	YATR	7 cut(s)	136, 338, 345, 353, 358, 400, 406
FatI	CATG	3 cut(s)	343, 356, 398
FblI	GTMKAC	1 cut(s)	382
FokI	GGATG	2 cut(s)	266, 316
HapII	CCGG	1 cut(s)	262
Hin1II	CATG	3 cut(s)	347, 360, 402
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	262
Hpy166II	GTNNAC	3 cut(s)	39, 204, 383
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	2 cut(s)	44, 144
Hpy8I	GTNNAC	3 cut(s)	39, 204, 383
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	405
HpyCH4III	ACNGT	3 cut(s)	253, 275, 365
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	3 cut(s)	74, 318, 416
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	3 cut(s)	347, 360, 402
Kzo9I	GATC	2 cut(s)	15, 188
LpnPI	CCDG	1 cut(s)	275
LweI	GCATC	3 cut(s)	109, 338, 425
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	2 cut(s)	275, 359
MalI	GATC	2 cut(s)	17, 190
MboI	GATC	2 cut(s)	15, 188
MboII	GAAGA	1 cut(s)	385
MfeI	CAATTG	1 cut(s)	69
MluCI	AATT	3 cut(s)	51, 69, 105
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	8 cut(s)	217, 236, 239, 248, 251, 278, 318, 402
MseI	TTAA	3 cut(s)	86, 321, 433
MslI	CAYNNNNRTG	1 cut(s)	403
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	263
MunI	CAATTG	1 cut(s)	69
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	2 cut(s)	15, 188
NlaIII	CATG	3 cut(s)	347, 360, 402
NlaIV	GGNNCC	3 cut(s)	142, 250, 266
NmuCI	GTSAC	2 cut(s)	275, 359
NspI	RCATGY	1 cut(s)	360
NspV	TTCGAA	1 cut(s)	157
PciI	ACATGT	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	175
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	26
PpuMI	RGGWCCY	2 cut(s)	265, 392
PscI	ACATGT	1 cut(s)	356
Psp5II	RGGWCCY	2 cut(s)	265, 392
PspCI	CACGTG	1 cut(s)	26
PspN4I	GGNNCC	3 cut(s)	142, 250, 266
PspPI	GGNCC	3 cut(s)	99, 265, 392
PspPPI	RGGWCCY	2 cut(s)	265, 392
RseI	CAYNNNNRTG	1 cut(s)	403
SaqAI	TTAA	3 cut(s)	86, 321, 433
Sau3AI	GATC	2 cut(s)	15, 188
Sau96I	GGNCC	3 cut(s)	99, 265, 392
ScrFI	CCNGG	1 cut(s)	263
SetI	ASST	7 cut(s)	28, 177, 209, 218, 228, 394, 413
SfaNI	GCATC	3 cut(s)	109, 338, 425
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	3 cut(s)	99, 265, 392
SmiMI	CAYNNNNRTG	1 cut(s)	403
Sse9I	AATT	3 cut(s)	51, 69, 105
StyD4I	CCNGG	1 cut(s)	261
TaaI	ACNGT	3 cut(s)	253, 275, 365
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	2 cut(s)	18, 157
TasI	AATT	3 cut(s)	51, 69, 105
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	3 cut(s)	86, 321, 433
Tru9I	TTAA	3 cut(s)	86, 321, 433
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	2 cut(s)	275, 359
Tsp45I	GTSAC	2 cut(s)	275, 359
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	2 cut(s)	24, 91
TspRI	CASTG	1 cut(s)	370
Van91I	CCANNNNNTGG	1 cut(s)	175
VpaK11BI	GGWCC	3 cut(s)	99, 265, 392
XceI	RCATGY	1 cut(s)	360
XmiI	GTMKAC	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.