Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001608

Physical Location & Seq

Genomic Coordinates Reverse (-)

19956833 .. 19958913

Gene Structure 2081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG138600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCGAGTTCCAAAGATGCAGAAGCTAGGGTTTCCGAGCATGAGGAGCTTGGATCAGTTCAAGTCCCTCTCCAAATCGGTCTCAGGAGGACCTCCAAAAGACCTTCGCCTACTCTTCACGTCCGCCGGAGTCGACCTTGTTGGTATGCTCGGCGAATTTGAAGCTCACCGCAGAGAAATTGGTGAAGGAGCAGGCTTCTGTGAAAACAGATCTGGAAATGGCACTCTGGCTTGGCATCCTTTTCATGAAGAATATTTTGTCAGTGGGATTTCTGATGGATCCATTTTCCATTGGCTTGTTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.13

Weight (kDa)

6.9

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37881
malus_domestica	MD02G1124000.v1.1 MD15G1238000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0125031 RchiOBHm_Chr5g0014171 RchiOBHm_Chr5g0043171 RchiOBHm_Chr5g0076521
rosa_laevigata	RLG00000007907 RLG00000008384 RLG00000009432
rosa_multiflora	Rmu_co8234657.1_g000001 Rmu_sc0022240.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432370 Rroxscaffold_1G00062410 Rroxscaffold_1G00062420 Rroxscaffold_1G00064350 Rroxscaffold_2G00121150 Rroxscaffold_3G00221160 Rroxscaffold_6G00392830 Rroxscaffold_7G00185980
rosa_samantha	Rh1CG046400 Rh2AG316900 Rh2BG321900 Rh2BG569300 Rh2CG328400 Rh2DG412600 Rh3CG300100 Rh4AG111100 Rh4AG163900 Rh4AG221600 Rh4DG159800 Rh5AG289900 Rh5BG247200 Rh5BG296400 Rh5CG119100 Rh5CG556300 Rh5DG305900 Rh5DG529800 Rh6AG197800 Rh6CG246800 Rh6DG138600 Rh6DG238200 Rh7AG475600 Rh7AG479400 Rh7CG460700 Rh7DG258400
rosa_wichuraiana	Rw1G000510 Rw2G014980 Rw4G016950 Rw7G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	2 cut(s)	123, 169
AclWI	GGATC	3 cut(s)	60, 273, 286
AcsI	RAATTY	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	61, 161
AjiI	CACGTC	1 cut(s)	120
AluBI	AGCT	3 cut(s)	25, 48, 164
AluI	AGCT	3 cut(s)	25, 48, 164
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	3 cut(s)	60, 273, 286
ApoI	RAATTY	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	158, 194
AvaII	GGWCC	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	278
BccI	CCATC	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	26
BglII	AGATCT	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	89
BmgBI	CACGTC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	280
BmsI	GCATC	2 cut(s)	6, 244
BsaI	GGTCTC	1 cut(s)	85
BseGI	GGATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	49
Bso31I	GGTCTC	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	52, 209, 278
BspACI	CCGC	2 cut(s)	123, 169
BspCNI	CTCAG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	280
BspPI	GGATC	3 cut(s)	60, 273, 286
BspTNI	GGTCTC	1 cut(s)	85
BssMI	GATC	3 cut(s)	52, 209, 278
Bst6I	CTCTTC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	3 cut(s)	55, 212, 281
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	3 cut(s)	52, 209, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstX2I	RGATCY	2 cut(s)	209, 278
BstYI	RGATCY	2 cut(s)	209, 278
BtrI	CACGTC	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	193
CciI	TCATGA	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	2 cut(s)	40, 245
CviJI	RGCY	6 cut(s)	25, 48, 164, 195, 230, 295
CviKI_1	RGCY	6 cut(s)	25, 48, 164, 195, 230, 295
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	3 cut(s)	54, 211, 280
DpnII	GATC	3 cut(s)	52, 209, 278
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EciI	GGCGGA	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	89
FaeI	CATG	2 cut(s)	43, 248
FaiI	YATR	3 cut(s)	41, 146, 246
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	39, 244
FblI	GTMKAC	1 cut(s)	132
FokI	GGATG	1 cut(s)	222
FspBI	CTAG	1 cut(s)	26
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	2 cut(s)	43, 248
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	129
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	2 cut(s)	158, 194
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	36, 274
Hpy188III	TCNNGA	3 cut(s)	84, 213, 245
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	113, 179
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	1 cut(s)	82
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	43, 248
Kzo9I	GATC	3 cut(s)	52, 209, 278
LmnI	GCTCC	2 cut(s)	45, 188
LpnPI	CCDG	5 cut(s)	69, 139, 177, 198, 212
LweI	GCATC	2 cut(s)	6, 244
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	119
MalI	GATC	3 cut(s)	54, 211, 280
MboI	GATC	3 cut(s)	52, 209, 278
MboII	GAAGA	2 cut(s)	106, 260
MflI	RGATCY	2 cut(s)	209, 278
MluCI	AATT	2 cut(s)	155, 177
MlyI	GAGTC	1 cut(s)	138
MnlI	CCTC	4 cut(s)	36, 77, 80, 102
MspI	CCGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	45
NdeII	GATC	3 cut(s)	52, 209, 278
NlaIII	CATG	2 cut(s)	43, 248
NlaIV	GGNNCC	1 cut(s)	280
NmeAIII	GCCGAG	1 cut(s)	129
PagI	TCATGA	1 cut(s)	244
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PpuMI	RGGWCCY	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	209, 278
SalI	GTCGAC	1 cut(s)	131
Sau3AI	GATC	3 cut(s)	52, 209, 278
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	138
SetI	ASST	7 cut(s)	27, 50, 94, 105, 122, 138, 166
SfaNI	GCATC	2 cut(s)	6, 244
SinI	GGWCC	1 cut(s)	89
Sse9I	AATT	2 cut(s)	155, 177
SsiI	CCGC	2 cut(s)	123, 169
SspI	AATATT	1 cut(s)	254
SspMI	CTAG	1 cut(s)	26
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	1 cut(s)	132
TaqII	GACCGA	1 cut(s)	67
TasI	AATT	2 cut(s)	155, 177
TscAI	CASTG	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	233, 261
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.