Rh2CG328400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001608
Physical Location & Seq
Reverse (-)
42847168 .. 42847359
192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG328400.1

Sequence Viewer

Length: 192 bp
ATGGCGGCGCGGGGTAGATCTAATCGGATATGGTTCTTCATGGATCCGATCTGGGAAAAGGTGGTTTTGGATGCGGCGTCGTGCGTGATGGGTGATCTGTCGTTGGAGGCAGCCGTGATGAGGCTGGGAAAGGCATGGCTTGCAACTGTTGGTCTTCCTGTTTCCTGGGTTAAAGTTTGGGTTAGGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.06

Weight (kDa)

9.77

Isoelectric Point (pI)

19.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 10
AciI CCGC 3 cut(s) 5, 10, 74
AclWI GGATC 2 cut(s) 38, 51
AcyI GRCGYC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 120
AjnI CCWGG 1 cut(s) 164
AlwI GGATC 2 cut(s) 38, 51
ApeKI GCWGC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 104
BamHI GGATCC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 82
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 166
BglII AGATCT 1 cut(s) 17
BisI GCNGC 3 cut(s) 6, 75, 111
BlsI GCNGC 3 cut(s) 7, 76, 112
Bme1390I CCNGG 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 61
BpiI GAAGAC 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 122
BseYI CCCAGC 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 120
Bsp143I GATC 4 cut(s) 17, 43, 48, 94
BspACI CCGC 3 cut(s) 5, 10, 74
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 45
BspPI GGATC 2 cut(s) 38, 51
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 4 cut(s) 17, 43, 48, 94
BssNI GRCGYC 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 148
BstACI GRCGYC 1 cut(s) 77
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 141
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 4 cut(s) 20, 46, 51, 97
BstMBI GATC 4 cut(s) 17, 43, 48, 94
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 146
BstX2I RGATCY 2 cut(s) 17, 43
BstYI RGATCY 2 cut(s) 17, 43
BtsCI GGATG 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 1 cut(s) 10
CseI GACGC 1 cut(s) 66
CviAII CATG 2 cut(s) 40, 135
CviJI RGCY 3 cut(s) 113, 124, 139
CviKI_1 RGCY 3 cut(s) 113, 124, 139
DpnI GATC 4 cut(s) 19, 45, 50, 96
DpnII GATC 4 cut(s) 17, 43, 48, 94
EcoRII CCWGG 1 cut(s) 164
FaeI CATG 2 cut(s) 43, 138
FaiI YATR 3 cut(s) 31, 41, 136
FatI CATG 2 cut(s) 39, 134
FauI CCCGC 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 6, 75, 111
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 3 cut(s) 6, 75, 111
GlaI GCGC 1 cut(s) 9
GluI GCNGC 3 cut(s) 6, 75, 111
GsaI CCCAGC 1 cut(s) 128
HgaI GACGC 1 cut(s) 66
HhaI GCGC 1 cut(s) 10
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 2 cut(s) 43, 138
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 27, 48
Hpy99I CGWCG 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 2 cut(s) 43, 138
HspAI GCGC 1 cut(s) 8
Kzo9I GATC 4 cut(s) 17, 43, 48, 94
LpnPI CCDG 5 cut(s) 37, 110, 151, 171, 178
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 61
MalI GATC 4 cut(s) 19, 45, 50, 96
MboI GATC 4 cut(s) 17, 43, 48, 94
MboII GAAGA 2 cut(s) 28, 146
MflI RGATCY 2 cut(s) 17, 43
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 2 cut(s) 100, 114
MseI TTAA 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 4 cut(s) 17, 43, 48, 94
NlaIII CATG 2 cut(s) 43, 138
NlaIV GGNNCC 1 cut(s) 45
PkrI GCNGC 3 cut(s) 7, 76, 112
Psp6I CCWGG 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 124
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 45
PsuI RGATCY 2 cut(s) 17, 43
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 3 cut(s) 6, 75, 111
Sau3AI GATC 4 cut(s) 17, 43, 48, 94
ScrFI CCNGG 1 cut(s) 166
SetI ASST 1 cut(s) 63
SfaNI GCATC 1 cut(s) 61
SsiI CCGC 3 cut(s) 5, 10, 74
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 148
TauI GCSGC 2 cut(s) 8, 77
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.