Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000942

Physical Location & Seq

Genomic Coordinates Forward (+)

10303686 .. 10306391

Gene Structure 2706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAAAAAAATAGAGAGACATAGGGTGGCGTTTGATCGATACAAGGCGATTATATTCAATGGGGTTAGTGGGATTGGTAGGATGAAGCAAAAGAAGGGGAGCTATGATATTAGTAAAGTCAGAGTTGTGGTGCAGTCTGCGAGCGAAGATCTTACTCTTGGTGTGGATGAGAGCTATACTTTGTTTGTGTTGAGGAAAGATGGGAAAGCTATTGTTGGGGAGGCGACTATTGAGTTGTATGCCTCTGATTTAATGACTTCAATTGACAGGCAAAACAATGGAGTTACATCGTCCTCATCAAGCAAGGAGCTGAAAAACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004563 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0009505 GO:0015929 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00511 ko00513 ko00520 ko00531 ko00603 ko00604 ko01100 ko04142 map00511 map00513 map00520 map00531 map00603 map00604 map01100 map04142

Pfam Domains

Protein Families

Glyco_hydro_20 Glycohydro_20b2

Protein Analysis

108

Amino Acids

11.89

Weight (kDa)

9.56

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycohydro_20b2	PF14845	31 - 70	7.4e-06	beta-acetyl hexosaminidase like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51610
fragaria_vesca	FvH4_6g16400 FvH4_6g37160
malus_domestica	MD09G1160600.v1.1 MD17G1146400.v1.1
prunus_persica	Prupe.3G019200_v2.0.a1 Prupe.3G019200_v2.0.a1 Prupe.3G019200_v2.0.a1
pyrus_communis	pycom08g05510 pycom09g07920 pycom10g14680 pycom17g13910
rosa_chinensis	RchiOBHm_Chr1g0341791 RchiOBHm_Chr2g0132611 RchiOBHm_Chr2g0145001 RchiOBHm_Chr2g0149771 RchiOBHm_Chr4g0396741 RchiOBHm_Chr5g0067921 RchiOBHm_Chr5g0070701 RchiOBHm_Chr6g0261841 RchiOBHm_Chr6g0284271 RchiOBHm_Chr7g0197681
rosa_laevigata	RLG00000009824
rosa_multiflora	Rmu_co7992122.1_g000001 Rmu_sc0000090.1_g000012 Rmu_sc0000452.1_g000030 Rmu_sc0000780.1_g000002 Rmu_sc0003767.1_g000027 Rmu_sc0004112.1_g000002 Rmu_sc0018143.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097740 Rroxscaffold_2G00117160 Rroxscaffold_2G00121820 Rroxscaffold_2G00126180 Rroxscaffold_6G00389050 Rroxscaffold_6G00399500
rosa_rugosa	Rorug02G0415900 Rorug07G0127900
rosa_samantha	Rh1AG355400 Rh1BG259200 Rh1CG064300 Rh1DG289200 Rh2AG360400 Rh2AG475600 Rh2AG551100 Rh2AG551200 Rh2BG365200 Rh2BG487000 Rh2CG327000 Rh2CG461100 Rh2DG496100 Rh5BG166300 Rh5DG280300 Rh6DG270000 Rh6DG270100 Rh7AG438900 Rh7CG425500
rosa_wichuraiana	Rw0G013420 Rw1G003830 Rw1G031360 Rw2G019280 Rw2G038760 Rw5G047430 Rw6G006480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	58, 261
AluBI	AGCT	4 cut(s)	102, 174, 209, 310
AluI	AGCT	4 cut(s)	102, 174, 209, 310
Alw26I	GTCTC	1 cut(s)	10
BccI	CCATC	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	10
BglII	AGATCT	1 cut(s)	148
Bsa29I	ATCGAT	1 cut(s)	37
BseCI	ATCGAT	1 cut(s)	37
BseGI	GGATG	2 cut(s)	87, 172
BsgI	GTGCAG	1 cut(s)	152
BshVI	ATCGAT	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	34, 148
BspDI	ATCGAT	1 cut(s)	37
BssMI	GATC	2 cut(s)	34, 148
BstC8I	GCNNGC	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	87, 172
BstKTI	GATC	2 cut(s)	37, 151
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	2 cut(s)	34, 148
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
Bsu15I	ATCGAT	1 cut(s)	37
BsuTUI	ATCGAT	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	87, 172
Cac8I	GCNNGC	1 cut(s)	142
ClaI	ATCGAT	1 cut(s)	37
CviJI	RGCY	4 cut(s)	102, 174, 209, 310
CviKI_1	RGCY	4 cut(s)	102, 174, 209, 310
DpnI	GATC	2 cut(s)	36, 150
DpnII	GATC	2 cut(s)	34, 148
FaiI	YATR	5 cut(s)	21, 53, 105, 177, 240
FokI	GGATG	2 cut(s)	94, 179
Hpy188I	TCNGA	2 cut(s)	122, 247
HpyAV	CCTTC	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	34, 148
LmnI	GCTCC	2 cut(s)	99, 307
LpnPI	CCDG	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	2 cut(s)	36, 150
MboI	GATC	2 cut(s)	34, 148
MboII	GAAGA	1 cut(s)	158
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	148
MluCI	AATT	1 cut(s)	261
MnlI	CCTC	4 cut(s)	186, 214, 253, 304
MseI	TTAA	1 cut(s)	251
MunI	CAATTG	1 cut(s)	261
NdeII	GATC	2 cut(s)	34, 148
PsuI	RGATCY	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	251
Sau3AI	GATC	2 cut(s)	34, 148
SetI	ASST	4 cut(s)	104, 176, 211, 312
SgeI	CNNG	6 cut(s)	55, 153, 170, 280, 312, 316
Sse9I	AATT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	37
TasI	AATT	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	17, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.