Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000942

Physical Location & Seq

Genomic Coordinates Reverse (-)

54571935 .. 54574117

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCTGCTCACTTCCACCGTCAAGCACCGCCTCCCTCCACTCCATTGGCATAGCCAACCCAGATTGCTCGCCTCCAGCATCAAGCACCGCCTCTCTCCACTTAATCTTGGTGTGGATGAGAGCTATACTCTGTTTGTATTGAAGAAAGATGGGAAAGCTATTGTTGGGGAGGCCACGATTGAGGTCGAGTTGGTGTTTATTATAAGGCGGATGACCGAGGATGGCTCTGCTGTAGCTGGTCTTGCTATTGCTGCAGCATCATTGGTTGCTGTAAATGTCACAGGAAATGGAATTTACAATCCTATAGGTTCATTTGTAGTTGGCAAGGATCTTGGAATGGTGGCTATCCGAAATTGTTCCCCAAGTTACTGTGGTAAGTTTCCATTTTTGGAAACTTACCCAGCTTTCTCTCTCCTCTCCCCCGATCCTTTCTTCCTCTTCGGCCCGATTTCTTGTTCCTCCGATTTCTCCCTTCTCCCGCCGACCCATGACGGAATCCGGCACCACCGGCTCGCCTTCTCCTCCTTGTCACGCCCGTGGCGTGTTTTGCGGTGGCTCGACCGGTGGAGCTCGGAATTGAGCCATGAAGTTCACCGTAGCAGTTTGGGAGTTTTGTCGATTTCCTGCGATTCCGGCCGTCTCCGGCCACCAAACCGGCGTCGAAGGTGCTGCTATCAAATTTTGGTGTCCATTGGAGTTGGTGGCAGGGGTAGCGGCGCCGCCACTGTGGGCCGCCGTAGCGGCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

249

Amino Acids

27.19

Weight (kDa)

9.92

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51610
fragaria_vesca	FvH4_6g16400 FvH4_6g37160
malus_domestica	MD09G1160600.v1.1 MD17G1146400.v1.1
prunus_persica	Prupe.3G019200_v2.0.a1 Prupe.3G019200_v2.0.a1 Prupe.3G019200_v2.0.a1
pyrus_communis	pycom08g05510 pycom09g07920 pycom10g14680 pycom17g13910
rosa_chinensis	RchiOBHm_Chr1g0341791 RchiOBHm_Chr2g0132611 RchiOBHm_Chr2g0145001 RchiOBHm_Chr2g0149771 RchiOBHm_Chr4g0396741 RchiOBHm_Chr5g0067921 RchiOBHm_Chr5g0070701 RchiOBHm_Chr6g0261841 RchiOBHm_Chr6g0284271 RchiOBHm_Chr7g0197681
rosa_laevigata	RLG00000009824
rosa_multiflora	Rmu_co7992122.1_g000001 Rmu_sc0000090.1_g000012 Rmu_sc0000452.1_g000030 Rmu_sc0000780.1_g000002 Rmu_sc0003767.1_g000027 Rmu_sc0004112.1_g000002 Rmu_sc0018143.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097740 Rroxscaffold_2G00117160 Rroxscaffold_2G00121820 Rroxscaffold_2G00126180 Rroxscaffold_6G00389050 Rroxscaffold_6G00399500
rosa_rugosa	Rorug02G0415900 Rorug07G0127900
rosa_samantha	Rh1AG355400 Rh1BG259200 Rh1CG064300 Rh1DG289200 Rh2AG360400 Rh2AG475600 Rh2AG551100 Rh2AG551200 Rh2BG365200 Rh2BG487000 Rh2CG327000 Rh2CG461100 Rh2DG496100 Rh5BG166300 Rh5DG280300 Rh6DG270000 Rh6DG270100 Rh7AG438900 Rh7CG425500
rosa_wichuraiana	Rw0G013420 Rw1G003830 Rw1G031360 Rw2G019280 Rw2G038760 Rw5G047430 Rw6G006480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
AccB1I	GGYRCC	2 cut(s)	501, 716
AclWI	GGATC	2 cut(s)	336, 419
AcoI	YGGCCR	2 cut(s)	634, 644
AcsI	RAATTY	2 cut(s)	291, 678
AcyI	GRCGYC	2 cut(s)	658, 717
AgeI	ACCGGT	1 cut(s)	561
AgsI	TTSAA	1 cut(s)	142
AleI	CACNNNNGTG	1 cut(s)	535
AluBI	AGCT	5 cut(s)	123, 158, 236, 404, 570
AluI	AGCT	5 cut(s)	123, 158, 236, 404, 570
Alw21I	GWGCWC	1 cut(s)	572
Alw26I	GTCTC	1 cut(s)	644
AlwI	GGATC	2 cut(s)	336, 419
AoxI	GGCC	5 cut(s)	171, 442, 634, 644, 730
ApeKI	GCWGC	4 cut(s)	4, 251, 254, 669
ApoI	RAATTY	2 cut(s)	291, 678
AsiGI	ACCGGT	1 cut(s)	561
Asp700I	GAANNNNTTC	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	719
AspS9I	GGNCC	2 cut(s)	443, 730
AsuHPI	GGTGA	1 cut(s)	584
BanI	GGYRCC	2 cut(s)	501, 716
BanII	GRGCYC	1 cut(s)	572
Bbv12I	GWGCWC	1 cut(s)	572
BbvI	GCAGC	3 cut(s)	238, 266, 656
BccI	CCATC	2 cut(s)	143, 215
BceAI	ACGGC	2 cut(s)	621, 720
BcgI	CGANNNNNNTGC	2 cut(s)	651, 685
BcoDI	GTCTC	1 cut(s)	644
BfaI	CTAG	1 cut(s)	748
BfmI	CTRYAG	3 cut(s)	231, 252, 303
BfoI	RGCGCY	1 cut(s)	720
BglI	GCCNNNNNGGC	1 cut(s)	741
BisI	GCNGC	9 cut(s)	5, 252, 255, 670, 715, 720, 733, 742, 745
BlsI	GCNGC	9 cut(s)	6, 253, 256, 671, 716, 721, 734, 743, 746
BmgT120I	GGNCC	2 cut(s)	443, 730
BmiI	GGNNCC	2 cut(s)	503, 718
BmsI	GCATC	2 cut(s)	87, 266
BplI	GAGNNNNNCTC	4 cut(s)	112, 144, 209, 241
BpmI	CTGGAG	1 cut(s)	58
BsaHI	GRCGYC	2 cut(s)	658, 717
BsaJI	CCNNGG	2 cut(s)	216, 536
BsaWI	WCCGGW	1 cut(s)	561
Bse118I	RCCGGY	3 cut(s)	507, 561, 654
BseDI	CCNNGG	2 cut(s)	216, 536
BseGI	GGATG	3 cut(s)	121, 216, 226
BseRI	GAGGAG	2 cut(s)	404, 511
BseX3I	CGGCCG	1 cut(s)	634
BseXI	GCAGC	3 cut(s)	238, 266, 656
BseYI	CCCAGC	1 cut(s)	400
Bsh1285I	CGRYCG	2 cut(s)	562, 637
BshFI	GGCC	5 cut(s)	173, 444, 636, 646, 732
BshNI	GGYRCC	2 cut(s)	501, 716
BshTI	ACCGGT	1 cut(s)	561
BsiEI	CGRYCG	2 cut(s)	562, 637
BsiHKAI	GWGCWC	1 cut(s)	572
BsiSI	CCGG	6 cut(s)	499, 508, 562, 633, 643, 655
BsmAI	GTCTC	1 cut(s)	644
BsmBI	CGTCTC	1 cut(s)	644
BsnI	GGCC	5 cut(s)	173, 444, 636, 646, 732
Bsp1286I	GDGCHC	1 cut(s)	572
Bsp143I	GATC	2 cut(s)	328, 424
BspANI	GGCC	5 cut(s)	173, 444, 636, 646, 732
BspLI	GGNNCC	2 cut(s)	503, 718
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	2 cut(s)	336, 419
BspT107I	GGYRCC	2 cut(s)	501, 716
BsrFI	RCCGGY	3 cut(s)	507, 561, 654
BssAI	RCCGGY	3 cut(s)	507, 561, 654
BssECI	CCNNGG	2 cut(s)	216, 536
BssMI	GATC	2 cut(s)	328, 424
BssNI	GRCGYC	2 cut(s)	658, 717
Bst4CI	ACNGT	4 cut(s)	19, 371, 596, 727
Bst6I	CTCTTC	1 cut(s)	443
BstACI	GRCGYC	2 cut(s)	658, 717
BstC8I	GCNNGC	2 cut(s)	69, 513
BstDSI	CCRYGG	1 cut(s)	536
BstF5I	GGATG	3 cut(s)	121, 216, 226
BstH2I	RGCGCY	1 cut(s)	720
BstHHI	GCGC	1 cut(s)	719
BstKTI	GATC	2 cut(s)	331, 427
BstMAI	GTCTC	1 cut(s)	644
BstMBI	GATC	2 cut(s)	328, 424
BstMCI	CGRYCG	2 cut(s)	562, 637
BstMWI	GCNNNNNNNGC	8 cut(s)	242, 251, 508, 547, 633, 711, 738, 741
BstSFI	CTRYAG	3 cut(s)	231, 252, 303
BstV1I	GCAGC	3 cut(s)	238, 266, 656
BstX2I	RGATCY	1 cut(s)	328
BstXI	CCANNNNNNTGG	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	328
BstZI	CGGCCG	1 cut(s)	634
BsuRI	GGCC	5 cut(s)	173, 444, 636, 646, 732
BtgI	CCRYGG	1 cut(s)	536
BtsCI	GGATG	3 cut(s)	121, 216, 226
BtsIMutI	CAGTG	1 cut(s)	723
Cac8I	GCNNGC	2 cut(s)	69, 513
CfoI	GCGC	1 cut(s)	719
Cfr10I	RCCGGY	3 cut(s)	507, 561, 654
Cfr13I	GGNCC	2 cut(s)	443, 730
CseI	GACGC	1 cut(s)	647
CspAI	ACCGGT	1 cut(s)	561
CviAII	CATG	2 cut(s)	488, 584
DinI	GGCGCC	1 cut(s)	718
DpnI	GATC	2 cut(s)	330, 426
DpnII	GATC	2 cut(s)	328, 424
EaeI	YGGCCR	2 cut(s)	634, 644
EagI	CGGCCG	1 cut(s)	634
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
EciI	GGCGGA	1 cut(s)	223
Ecl136II	GAGCTC	1 cut(s)	570
EclXI	CGGCCG	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	572
Eco52I	CGGCCG	1 cut(s)	634
Eco53kI	GAGCTC	1 cut(s)	570
EcoICRI	GAGCTC	1 cut(s)	570
EcoT38I	GRGCYC	1 cut(s)	572
EgeI	GGCGCC	1 cut(s)	718
EheI	GGCGCC	1 cut(s)	718
Esp3I	CGTCTC	1 cut(s)	644
FaeI	CATG	2 cut(s)	491, 587
FaiI	YATR	6 cut(s)	51, 126, 203, 305, 489, 585
FatI	CATG	2 cut(s)	487, 583
FauI	CCCGC	1 cut(s)	486
Fnu4HI	GCNGC	9 cut(s)	5, 252, 255, 670, 715, 720, 733, 742, 745
FokI	GGATG	3 cut(s)	128, 223, 233
FriOI	GRGCYC	1 cut(s)	572
Fsp4HI	GCNGC	9 cut(s)	5, 252, 255, 670, 715, 720, 733, 742, 745
FspBI	CTAG	1 cut(s)	748
GlaI	GCGC	1 cut(s)	718
GluI	GCNGC	9 cut(s)	5, 252, 255, 670, 715, 720, 733, 742, 745
GsaI	CCCAGC	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	720
HaeIII	GGCC	5 cut(s)	173, 444, 636, 646, 732
HapII	CCGG	6 cut(s)	499, 508, 562, 633, 643, 655
HgaI	GACGC	1 cut(s)	647
HhaI	GCGC	1 cut(s)	719
Hin1I	GRCGYC	2 cut(s)	658, 717
Hin1II	CATG	2 cut(s)	491, 587
Hin6I	GCGC	1 cut(s)	717
HinP1I	GCGC	1 cut(s)	717
HinfI	GANTC	2 cut(s)	495, 629
HpaII	CCGG	6 cut(s)	499, 508, 562, 633, 643, 655
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	3 cut(s)	350, 463, 574
Hpy8I	GTNNAC	1 cut(s)	592
Hpy99I	CGWCG	1 cut(s)	663
HpyAV	CCTTC	3 cut(s)	482, 526, 657
HpyCH4III	ACNGT	4 cut(s)	19, 371, 596, 727
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	8 cut(s)	242, 251, 508, 547, 633, 711, 738, 741
Hsp92I	GRCGYC	2 cut(s)	658, 717
Hsp92II	CATG	2 cut(s)	491, 587
HspAI	GCGC	1 cut(s)	717
KasI	GGCGCC	1 cut(s)	716
Kzo9I	GATC	2 cut(s)	328, 424
LmnI	GCTCC	1 cut(s)	567
Lsp1109I	GCAGC	3 cut(s)	238, 266, 656
LweI	GCATC	2 cut(s)	87, 266
MaeI	CTAG	1 cut(s)	748
MaeIII	GTNAC	3 cut(s)	277, 365, 528
MalI	GATC	2 cut(s)	330, 426
MboI	GATC	2 cut(s)	328, 424
MboII	GAAGA	3 cut(s)	154, 424, 430
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	572
MluCI	AATT	4 cut(s)	291, 352, 575, 678
Mly113I	GGCGCC	1 cut(s)	717
MroXI	GAANNNNTTC	1 cut(s)	355
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	535
MspI	CCGG	6 cut(s)	499, 508, 562, 633, 643, 655
MwoI	GCNNNNNNNGC	8 cut(s)	242, 251, 508, 547, 633, 711, 738, 741
NarI	GGCGCC	1 cut(s)	717
NdeII	GATC	2 cut(s)	328, 424
NlaIII	CATG	2 cut(s)	491, 587
NlaIV	GGNNCC	2 cut(s)	503, 718
NmuCI	GTSAC	2 cut(s)	277, 528
OliI	CACNNNNGTG	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	538
PdmI	GAANNNNTTC	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	495, 629
PinAI	ACCGGT	1 cut(s)	561
PkrI	GCNGC	9 cut(s)	6, 253, 256, 671, 716, 721, 734, 743, 746
PluTI	GGCGCC	1 cut(s)	720
PsiI	TTATAA	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	572
PspFI	CCCAGC	1 cut(s)	400
PspN4I	GGNNCC	2 cut(s)	503, 718
PspPI	GGNCC	2 cut(s)	443, 730
PstI	CTGCAG	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	535
SacI	GAGCTC	1 cut(s)	572
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	9 cut(s)	5, 252, 255, 670, 715, 720, 733, 742, 745
Sau3AI	GATC	2 cut(s)	328, 424
Sau96I	GGNCC	2 cut(s)	443, 730
SduI	GDGCHC	1 cut(s)	572
SetI	ASST	8 cut(s)	125, 160, 186, 238, 310, 406, 572, 668
SfaNI	GCATC	2 cut(s)	87, 266
SfcI	CTRYAG	3 cut(s)	231, 252, 303
SfoI	GGCGCC	1 cut(s)	718
SmiMI	CAYNNNNRTG	1 cut(s)	535
Sse9I	AATT	4 cut(s)	291, 352, 575, 678
SspDI	GGCGCC	1 cut(s)	716
SspMI	CTAG	1 cut(s)	748
SstI	GAGCTC	1 cut(s)	572
TaaI	ACNGT	4 cut(s)	19, 371, 596, 727
TaqI	TCGA	4 cut(s)	186, 558, 617, 661
TaqII	GACCGA	1 cut(s)	230
TasI	AATT	4 cut(s)	291, 352, 575, 678
TauI	GCSGC	5 cut(s)	717, 722, 735, 744, 747
TfiI	GAWTC	2 cut(s)	495, 629
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	730
TseFI	GTSAC	2 cut(s)	277, 528
TseI	GCWGC	4 cut(s)	4, 251, 254, 669
Tsp45I	GTSAC	2 cut(s)	277, 528
TspDTI	ATGAA	2 cut(s)	300, 600
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	1 cut(s)	730
XapI	RAATTY	2 cut(s)	291, 678
XmnI	GAANNNNTTC	1 cut(s)	355
XspI	CTAG	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.