RchiOBHm_Chr6g0261841

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000942
Physical Location & Seq
Forward (+)
16600934 .. 16604771
3838 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23482

Sequence Viewer

Length: 729 bp
ATGCCAAAAAGAGTTCGAAACCCCGCTATTATTTTAGCTCAAATTCTAATTTCCCTCCTTTTGAAGTTTGCTATCAAATACCAAGGGATTGAGCCGAGAAAAGAAATTAAAAAAAACTCTCCCAAAGCCTGTCTCTCTCGTCCTCCCTCTCTATATATCCATCATAGCAAACACTCTTTCTCTCTCTTAGAACTTGGGAAACAAAATGGGTCAGGGAACTCCAGGCGGTTTGAACTGGCAAGGCCTACCGGGCAACCGAAAGCCCAACGGCAACGACAAGAAGGAGAAGAAGTTCGAGCCGGCGGCGGAGCCCGAGTGGGCCGCAAGCAGCGGAAACAGAAGGGTCCAGAAGCGGCGGCGAGGCTTCCGACGGTGACGCCGCTGACCAAGTGCAAGCTCCGGCTACTGAAGCTGGAGCGGATTAAGGATTACCTGCTTATGGAGGAGAAGTTTGTGACGAACCAGGAGCGGCTGAAGCCTGAGGAGGAGAAGGCCAAGGAGGACAGATCTAAGGTCGACGATCTACGTGCCTCGCCCATGAGCGTCGGCAATCTGGAGGAGCTGATCGACGAGAACCACGCGATTGTTTCGTCGTCGGTGGAGCCCGAGTACTATGTGGGGGTCCTCTCCTTTGTCGATAAGGACCAGTTGGAGCCTGGGTGCGCCATTTTGATGCACAATAAGTCGCTTAATCTTGGTGTGGATGAGAGTATACTCTGTTTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007276 GO:0007292 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010074 GO:0010078 GO:0010101 GO:0010102 GO:0010243 GO:0010311 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019941 GO:0019953 GO:0022414 GO:0022607 GO:0022622 GO:0022624 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034622 GO:0034976 GO:0035266 GO:0035966 GO:0036402 GO:0036503 GO:0040007 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043254 GO:0043632 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045087 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0046686 GO:0048232 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048532 GO:0048589 GO:0048609 GO:0048646 GO:0048731 GO:0048827 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051704 GO:0051716 GO:0051788 GO:0060255 GO:0060260 GO:0060261 GO:0060968 GO:0061136 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090351 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05165 ko05169 ko05203 map03050 map05165 map05169 map05203
Pfam Domains
Protein Families
AAA

Protein Analysis

242

Amino Acids

27.33

Weight (kDa)

9.55

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 182 - 229 4.3e-10 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 441
AccBSI CCGCTC 2 cut(s) 418, 469
AccI GTMKAC 2 cut(s) 516, 712
AccII CGCG 1 cut(s) 581
AcsI RAATTY 1 cut(s) 42
AcuI CTGAAG 2 cut(s) 428, 494
AcyI GRCGYC 1 cut(s) 377
AfaI GTAC 1 cut(s) 611
AfiI CCNNNNNNNGG 1 cut(s) 439
AgsI TTSAA 2 cut(s) 64, 233
AjnI CCWGG 3 cut(s) 221, 462, 655
AloI GAACNNNNNNTCC 2 cut(s) 276, 308
AluBI AGCT 4 cut(s) 38, 397, 412, 562
AluI AGCT 4 cut(s) 38, 397, 412, 562
Alw26I GTCTC 1 cut(s) 137
Ama87I CYCGRG 2 cut(s) 312, 605
AoxI GGCC 3 cut(s) 242, 319, 492
ApeKI GCWGC 1 cut(s) 328
ApoI RAATTY 1 cut(s) 42
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 665
AspS9I GGNCC 4 cut(s) 319, 344, 622, 643
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 385
AsuII TTCGAA 1 cut(s) 16
AvaI CYCGRG 2 cut(s) 312, 605
AvaII GGWCC 3 cut(s) 344, 622, 643
AxyI CCTNAGG 1 cut(s) 480
BanII GRGCYC 2 cut(s) 313, 606
BbvI GCAGC 1 cut(s) 340
BccI CCATC 1 cut(s) 168
BceAI ACGGC 1 cut(s) 284
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BciT130I CCWGG 3 cut(s) 223, 464, 657
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 137
BfuAI ACCTGC 1 cut(s) 441
BglI GCCNNNNNGGC 1 cut(s) 250
BglII AGATCT 1 cut(s) 506
BisI GCNGC 7 cut(s) 304, 322, 329, 354, 357, 380, 470
BlsI GCNGC 7 cut(s) 305, 323, 330, 355, 358, 381, 471
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 4 cut(s) 223, 250, 464, 657
Bme18I GGWCC 3 cut(s) 344, 622, 643
BmeT110I CYCGRG 2 cut(s) 312, 605
BmgT120I GGNCC 4 cut(s) 319, 344, 622, 643
BmiI GGNNCC 5 cut(s) 310, 345, 603, 623, 654
BmrFI CCNGG 4 cut(s) 223, 250, 464, 657
BmsI GCATC 1 cut(s) 663
BpmI CTGGAG 3 cut(s) 205, 434, 575
Bpu14I TTCGAA 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 250
BsaAI YACGTR 1 cut(s) 527
BsaHI GRCGYC 1 cut(s) 377
BsaJI CCNNGG 3 cut(s) 82, 495, 656
Bsc4I CCNNNNNNNGG 1 cut(s) 439
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 2 cut(s) 240, 646
Bse21I CCTNAGG 1 cut(s) 480
BseBI CCWGG 3 cut(s) 223, 464, 657
BseDI CCNNGG 3 cut(s) 82, 495, 656
BseGI GGATG 1 cut(s) 709
BseLI CCNNNNNNNGG 1 cut(s) 439
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 2 cut(s) 240, 646
BseRI GAGGAG 4 cut(s) 458, 497, 500, 572
BseXI GCAGC 1 cut(s) 340
Bsh1236I CGCG 1 cut(s) 581
BshFI GGCC 3 cut(s) 244, 321, 494
BsiHKCI CYCGRG 2 cut(s) 312, 605
BsiSI CCGG 3 cut(s) 249, 300, 400
BslI CCNNNNNNNGG 1 cut(s) 439
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 3 cut(s) 244, 321, 494
BsoBI CYCGRG 2 cut(s) 312, 605
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 2 cut(s) 313, 606
Bsp143I GATC 3 cut(s) 506, 520, 564
BspANI GGCC 3 cut(s) 244, 321, 494
BspCNI CTCAG 1 cut(s) 472
BspFNI CGCG 1 cut(s) 581
BspLI GGNNCC 5 cut(s) 310, 345, 603, 623, 654
BspMI ACCTGC 1 cut(s) 441
BspT104I TTCGAA 1 cut(s) 16
BsrBI CCGCTC 2 cut(s) 418, 469
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 2 cut(s) 240, 646
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 82, 495, 656
BssMI GATC 3 cut(s) 506, 520, 564
BssNAI GTATAC 1 cut(s) 713
BssNI GRCGYC 1 cut(s) 377
BssT1I CCWWGG 2 cut(s) 82, 495
Bst1107I GTATAC 1 cut(s) 713
Bst2UI CCWGG 3 cut(s) 223, 464, 657
Bst4CI ACNGT 1 cut(s) 373
BstACI GRCGYC 1 cut(s) 377
BstBAI YACGTR 1 cut(s) 527
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 301, 326, 395
BstDEI CTNAG 3 cut(s) 187, 480, 510
BstF5I GGATG 1 cut(s) 709
BstFNI CGCG 1 cut(s) 581
BstHHI GCGC 1 cut(s) 665
BstKTI GATC 3 cut(s) 509, 523, 567
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 3 cut(s) 506, 520, 564
BstMWI GCNNNNNNNGC 3 cut(s) 250, 409, 475
BstNI CCWGG 3 cut(s) 223, 464, 657
BstSCI CCNGG 4 cut(s) 221, 248, 462, 655
BstUI CGCG 1 cut(s) 581
BstV1I GCAGC 1 cut(s) 340
BstX2I RGATCY 1 cut(s) 506
BstYI RGATCY 1 cut(s) 506
BstZ17I GTATAC 1 cut(s) 713
Bsu36I CCTNAGG 1 cut(s) 480
BsuRI GGCC 3 cut(s) 244, 321, 494
BtsCI GGATG 1 cut(s) 709
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 3 cut(s) 301, 326, 395
CfoI GCGC 1 cut(s) 665
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 4 cut(s) 319, 344, 622, 643
CseI GACGC 2 cut(s) 385, 532
Csp6I GTAC 1 cut(s) 610
CviAII CATG 1 cut(s) 538
CviQI GTAC 1 cut(s) 610
DdeI CTNAG 3 cut(s) 187, 480, 510
DpnI GATC 3 cut(s) 508, 522, 566
DpnII GATC 3 cut(s) 506, 520, 564
EciI GGCGGA 1 cut(s) 321
Eco130I CCWWGG 2 cut(s) 82, 495
Eco147I AGGCCT 1 cut(s) 244
Eco24I GRGCYC 2 cut(s) 313, 606
Eco47I GGWCC 3 cut(s) 344, 622, 643
Eco57I CTGAAG 2 cut(s) 428, 494
Eco81I CCTNAGG 1 cut(s) 480
Eco88I CYCGRG 2 cut(s) 312, 605
EcoO109I RGGNCCY 1 cut(s) 622
EcoRII CCWGG 3 cut(s) 221, 462, 655
EcoT14I CCWWGG 2 cut(s) 82, 495
EcoT38I GRGCYC 2 cut(s) 313, 606
ErhI CCWWGG 2 cut(s) 82, 495
FaeI CATG 1 cut(s) 541
FaiI YATR 7 cut(s) 154, 156, 165, 440, 539, 615, 713
FatI CATG 1 cut(s) 537
FauI CCCGC 1 cut(s) 31
FblI GTMKAC 2 cut(s) 516, 712
Fnu4HI GCNGC 7 cut(s) 304, 322, 329, 354, 357, 380, 470
FokI GGATG 1 cut(s) 716
FriOI GRGCYC 2 cut(s) 313, 606
Fsp4HI GCNGC 7 cut(s) 304, 322, 329, 354, 357, 380, 470
GlaI GCGC 1 cut(s) 664
GluI GCNGC 7 cut(s) 304, 322, 329, 354, 357, 380, 470
GsuI CTGGAG 3 cut(s) 205, 434, 575
HaeIII GGCC 3 cut(s) 244, 321, 494
HapII CCGG 3 cut(s) 249, 300, 400
HgaI GACGC 2 cut(s) 385, 532
HhaI GCGC 1 cut(s) 665
Hin1I GRCGYC 1 cut(s) 377
Hin1II CATG 1 cut(s) 541
Hin6I GCGC 1 cut(s) 663
HinP1I GCGC 1 cut(s) 663
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HpaII CCGG 3 cut(s) 249, 300, 400
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 2 cut(s) 517, 713
Hpy188I TCNGA 1 cut(s) 369
Hpy188III TCNNGA 2 cut(s) 347, 554
Hpy8I GTNNAC 2 cut(s) 517, 713
Hpy99I CGWCG 6 cut(s) 373, 521, 548, 572, 595, 598
HpyAV CCTTC 3 cut(s) 275, 334, 484
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 2 cut(s) 393, 676
HpyF10VI GCNNNNNNNGC 3 cut(s) 250, 409, 475
HpyF3I CTNAG 3 cut(s) 187, 480, 510
HpySE526I ACGT 1 cut(s) 526
Hsp92I GRCGYC 1 cut(s) 377
Hsp92II CATG 1 cut(s) 541
HspAI GCGC 1 cut(s) 663
KroI GCCGGC 1 cut(s) 299
KroNI GCCGGC 1 cut(s) 301
Kzo9I GATC 3 cut(s) 506, 520, 564
LmnI GCTCC 7 cut(s) 308, 402, 415, 466, 559, 601, 652
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 1 cut(s) 663
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 2 cut(s) 373, 454
MalI GATC 3 cut(s) 508, 522, 566
MbiI CCGCTC 2 cut(s) 418, 469
MboI GATC 3 cut(s) 506, 520, 564
MboII GAAGA 1 cut(s) 299
MflI RGATCY 1 cut(s) 506
MhlI GDGCHC 2 cut(s) 313, 606
MluCI AATT 3 cut(s) 42, 48, 105
MmeI TCCRAC 2 cut(s) 392, 630
MroNI GCCGGC 1 cut(s) 299
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 3 cut(s) 108, 423, 690
MslI CAYNNNNRTG 1 cut(s) 671
MspA1I CMGCKG 2 cut(s) 331, 382
MspI CCGG 3 cut(s) 249, 300, 400
MspR9I CCNGG 4 cut(s) 223, 250, 464, 657
MvaI CCWGG 3 cut(s) 223, 464, 657
MvnI CGCG 1 cut(s) 581
MwoI GCNNNNNNNGC 3 cut(s) 250, 409, 475
NaeI GCCGGC 1 cut(s) 301
NciI CCSGG 1 cut(s) 250
NdeII GATC 3 cut(s) 506, 520, 564
NgoMIV GCCGGC 1 cut(s) 299
NlaIII CATG 1 cut(s) 541
NlaIV GGNNCC 5 cut(s) 310, 345, 603, 623, 654
NmeAIII GCCGAG 1 cut(s) 120
NmuCI GTSAC 2 cut(s) 373, 454
NspV TTCGAA 1 cut(s) 16
PceI AGGCCT 1 cut(s) 244
PdiI GCCGGC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 291
PkrI GCNGC 7 cut(s) 305, 323, 330, 355, 358, 381, 471
Ppu21I YACGTR 1 cut(s) 527
PpuMI RGGWCCY 1 cut(s) 622
Psp5II RGGWCCY 1 cut(s) 622
Psp6I CCWGG 3 cut(s) 221, 462, 655
PspGI CCWGG 3 cut(s) 221, 462, 655
PspN4I GGNNCC 5 cut(s) 310, 345, 603, 623, 654
PspPI GGNCC 4 cut(s) 319, 344, 622, 643
PspPPI RGGWCCY 1 cut(s) 622
PsuI RGATCY 1 cut(s) 506
RsaI GTAC 1 cut(s) 611
RsaNI GTAC 1 cut(s) 610
RseI CAYNNNNRTG 1 cut(s) 671
SalI GTCGAC 1 cut(s) 515
SaqAI TTAA 3 cut(s) 108, 423, 690
SatI GCNGC 7 cut(s) 304, 322, 329, 354, 357, 380, 470
Sau3AI GATC 3 cut(s) 506, 520, 564
Sau96I GGNCC 4 cut(s) 319, 344, 622, 643
ScaI AGTACT 1 cut(s) 611
ScrFI CCNGG 4 cut(s) 223, 250, 464, 657
SduI GDGCHC 2 cut(s) 313, 606
SetI ASST 7 cut(s) 40, 399, 414, 435, 516, 529, 564
SfaNI GCATC 1 cut(s) 663
SfuI TTCGAA 1 cut(s) 16
SinI GGWCC 3 cut(s) 344, 622, 643
SmiMI CAYNNNNRTG 1 cut(s) 671
Sse9I AATT 3 cut(s) 42, 48, 105
SseBI AGGCCT 1 cut(s) 244
StuI AGGCCT 1 cut(s) 244
StyD4I CCNGG 4 cut(s) 221, 248, 462, 655
StyI CCWWGG 2 cut(s) 82, 495
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 1 cut(s) 529
TaqI TCGA 5 cut(s) 16, 295, 516, 567, 636
TasI AATT 3 cut(s) 42, 48, 105
TatI WGTACW 1 cut(s) 609
TauI GCSGC 6 cut(s) 306, 324, 356, 359, 382, 472
Tru1I TTAA 3 cut(s) 108, 423, 690
Tru9I TTAA 3 cut(s) 108, 423, 690
TseFI GTSAC 2 cut(s) 373, 454
TseI GCWGC 1 cut(s) 328
Tsp45I GTSAC 2 cut(s) 373, 454
VpaK11BI GGWCC 3 cut(s) 344, 622, 643
XapI RAATTY 1 cut(s) 42
XcmI CCANNNNNNNNNTGG 1 cut(s) 653
XmiI GTMKAC 2 cut(s) 516, 712
XmnI GAANNNNTTC 1 cut(s) 291
ZrmI AGTACT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.