pycom10g14680

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000942
Physical Location & Seq
Forward (+)
18077978 .. 18079220
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g14680.1

Sequence Viewer

Length: 648 bp
ATGGATACAAAAACCGCATCGCAAATTTCAGTGACTTGTTTCCAAAGACTTCTTTCTCGCTTCAAAACTTTCACTCGCTCTTCTCTCTTCCCTCTCGAGACAAAAAAAAAAATGGGTCAGGGAACGCCCGGCGGGTTGAACCGACAAGGCCTACCGGGCGACCGAAAGCCCGATGGGAACGACAAGAAAGAGAAGAAGTTCGAGCCGGCGGCTCCGCCTGCCCGAGTCGGCCGGAAACAGCGCAAGCAGAAGGGTCCCGAAGCTGCGGCACGGCTCCCGACGGTTACCCCGCTGACGAAGTGCAAGCTTCGGCTGCTGAAGCTGGAGAGAATCAAGGACTATCTCCTCATGGAGGAGGAGTTCGTCACAAACCAGGAGCGGCTCAAGCCGCAGGAGGAGAAAGCCGAGGAGGACAGATCTAAAGTTGACGATCTCCGAGGCTCACCGATGAGCGTGGGGAATCTGGAGGAGTTAATTGATGAGAATCACGCCATTGTTTCGTCCTCCGTCGGTCCTGAGTACTACGTTGGGATATTGTCCTTCGTGGATAAAGACCAATTGGAACCTGGGTGTGCGATTTTGATGCATAATAAGGTGCTTTCTGTTGTTGGGCTTCTTCAAGATGAAGTTGATCGATGGTGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007276 GO:0007292 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010074 GO:0010078 GO:0010101 GO:0010102 GO:0010243 GO:0010311 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019941 GO:0019953 GO:0022414 GO:0022607 GO:0022622 GO:0022624 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034622 GO:0034976 GO:0035266 GO:0035966 GO:0036402 GO:0036503 GO:0040007 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043254 GO:0043632 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045087 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0046686 GO:0048232 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048532 GO:0048589 GO:0048609 GO:0048646 GO:0048731 GO:0048827 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051704 GO:0051716 GO:0051788 GO:0060255 GO:0060260 GO:0060261 GO:0060968 GO:0061136 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090351 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05165 ko05169 ko05203 map03050 map05165 map05169 map05203
Pfam Domains
Protein Families
AAA

Protein Analysis

216

Amino Acids

24.23

Weight (kDa)

8.96

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 152 - 206 1.2e-10 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 379
AciI CCGC 8 cut(s) 15, 132, 209, 215, 266, 290, 379, 389
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 338
AfaI GTAC 1 cut(s) 521
AfiI CCNNNNNNNGG 1 cut(s) 352
AgsI TTSAA 3 cut(s) 64, 139, 620
AjnI CCWGG 2 cut(s) 372, 565
AloI GAACNNNNNNTCC 2 cut(s) 344, 376
AluBI AGCT 3 cut(s) 263, 307, 322
AluI AGCT 3 cut(s) 263, 307, 322
Alw26I GTCTC 1 cut(s) 92
Ama87I CYCGRG 2 cut(s) 95, 222
AoxI GGCC 2 cut(s) 148, 229
ApeKI GCWGC 2 cut(s) 263, 313
ApoI RAATTY 1 cut(s) 24
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 243
AspS9I GGNCC 2 cut(s) 254, 512
AsuC2I CCSGG 2 cut(s) 129, 156
AsuHPI GGTGA 1 cut(s) 435
AvaI CYCGRG 2 cut(s) 95, 222
AvaII GGWCC 2 cut(s) 254, 512
BbvI GCAGC 2 cut(s) 250, 300
BccI CCATC 2 cut(s) 167, 630
BceAI ACGGC 1 cut(s) 287
BcgI CGANNNNNNTGC 2 cut(s) 565, 599
BciT130I CCWGG 2 cut(s) 374, 567
BcnI CCSGG 2 cut(s) 129, 156
BcoDI GTCTC 1 cut(s) 92
BglI GCCNNNNNGGC 1 cut(s) 156
BglII AGATCT 1 cut(s) 416
BisI GCNGC 6 cut(s) 210, 264, 267, 314, 380, 389
BlsI GCNGC 6 cut(s) 211, 265, 268, 315, 381, 390
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 4 cut(s) 129, 156, 374, 567
Bme18I GGWCC 2 cut(s) 254, 512
BmeT110I CYCGRG 2 cut(s) 95, 222
BmgT120I GGNCC 2 cut(s) 254, 512
BmiI GGNNCC 5 cut(s) 213, 255, 256, 275, 564
BmrFI CCNGG 4 cut(s) 129, 156, 374, 567
BmsI GCATC 2 cut(s) 26, 573
BpmI CTGGAG 2 cut(s) 344, 485
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 2 cut(s) 129, 156
Bsa29I ATCGAT 1 cut(s) 634
BsaBI GATNNNNATC 1 cut(s) 483
BsaJI CCNNGG 3 cut(s) 405, 436, 566
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse118I RCCGGY 1 cut(s) 205
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 2 cut(s) 374, 567
BseCI ATCGAT 1 cut(s) 634
BseDI CCNNGG 3 cut(s) 405, 436, 566
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMII CTCAG 1 cut(s) 507
BseRI GAGGAG 6 cut(s) 335, 368, 371, 410, 422, 482
BseX3I CGGCCG 1 cut(s) 229
BseXI GCAGC 2 cut(s) 250, 300
Bsh1285I CGRYCG 2 cut(s) 163, 232
BshFI GGCC 2 cut(s) 150, 231
BshVI ATCGAT 1 cut(s) 634
BsiEI CGRYCG 2 cut(s) 163, 232
BsiHKCI CYCGRG 2 cut(s) 95, 222
BsiSI CCGG 4 cut(s) 129, 155, 206, 232
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 352
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 2 cut(s) 150, 231
BsoBI CYCGRG 2 cut(s) 95, 222
Bsp143I GATC 3 cut(s) 416, 430, 631
BspACI CCGC 8 cut(s) 15, 132, 209, 215, 266, 290, 379, 389
BspANI GGCC 2 cut(s) 150, 231
BspCNI CTCAG 1 cut(s) 508
BspDI ATCGAT 1 cut(s) 634
BspLI GGNNCC 5 cut(s) 213, 255, 256, 275, 564
BspQI GCTCTTC 1 cut(s) 85
BsrBI CCGCTC 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 3 cut(s) 405, 436, 566
BssMI GATC 3 cut(s) 416, 430, 631
Bst2UI CCWGG 2 cut(s) 374, 567
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 2 cut(s) 85, 92
BstC8I GCNNGC 4 cut(s) 207, 219, 245, 305
BstDEI CTNAG 1 cut(s) 516
BstEII GGTNACC 1 cut(s) 283
BstENI CCTNNNNNAGG 1 cut(s) 350
BstHHI GCGC 1 cut(s) 243
BstKTI GATC 3 cut(s) 419, 433, 634
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 3 cut(s) 416, 430, 631
BstMCI CGRYCG 2 cut(s) 163, 232
BstMWI GCNNNNNNNGC 6 cut(s) 156, 218, 313, 319, 385, 388
BstNI CCWGG 2 cut(s) 374, 567
BstPI GGTNACC 1 cut(s) 283
BstSCI CCNGG 4 cut(s) 127, 154, 372, 565
BstV1I GCAGC 2 cut(s) 250, 300
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BstZI CGGCCG 1 cut(s) 229
Bsu15I ATCGAT 1 cut(s) 634
BsuRI GGCC 2 cut(s) 150, 231
BsuTUI ATCGAT 1 cut(s) 634
BtgZI GCGATG 1 cut(s) 3
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 4 cut(s) 207, 219, 245, 305
CfoI GCGC 1 cut(s) 243
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 254, 512
ClaI ATCGAT 1 cut(s) 634
Csp6I GTAC 1 cut(s) 520
CviAII CATG 1 cut(s) 349
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 1 cut(s) 516
DpnI GATC 3 cut(s) 418, 432, 633
DpnII GATC 3 cut(s) 416, 430, 631
EaeI YGGCCR 1 cut(s) 229
EagI CGGCCG 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 85, 92
EarI CTCTTC 2 cut(s) 85, 92
EciI GGCGGA 1 cut(s) 204
EclXI CGGCCG 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 150
Eco47I GGWCC 2 cut(s) 254, 512
Eco52I CGGCCG 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 338
Eco88I CYCGRG 2 cut(s) 95, 222
Eco91I GGTNACC 1 cut(s) 283
EcoNI CCTNNNNNAGG 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 254
EcoO65I GGTNACC 1 cut(s) 283
EcoRII CCWGG 2 cut(s) 372, 565
EcoT22I ATGCAT 1 cut(s) 588
FaeI CATG 1 cut(s) 352
FaiI YATR 2 cut(s) 350, 588
FaqI GGGAC 1 cut(s) 240
FatI CATG 1 cut(s) 348
FauI CCCGC 2 cut(s) 125, 297
Fnu4HI GCNGC 6 cut(s) 210, 264, 267, 314, 380, 389
Fsp4HI GCNGC 6 cut(s) 210, 264, 267, 314, 380, 389
GlaI GCGC 1 cut(s) 242
GluI GCNGC 6 cut(s) 210, 264, 267, 314, 380, 389
GsuI CTGGAG 2 cut(s) 344, 485
HaeIII GGCC 2 cut(s) 150, 231
HapII CCGG 4 cut(s) 129, 155, 206, 232
HhaI GCGC 1 cut(s) 243
Hin1II CATG 1 cut(s) 352
Hin6I GCGC 1 cut(s) 241
HinP1I GCGC 1 cut(s) 241
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 4 cut(s) 225, 330, 460, 484
HpaII CCGG 4 cut(s) 129, 155, 206, 232
HphI GGTGA 1 cut(s) 435
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 1 cut(s) 437
Hpy188III TCNNGA 7 cut(s) 95, 97, 257, 277, 464, 515, 620
Hpy8I GTNNAC 1 cut(s) 427
Hpy99I CGWCG 2 cut(s) 283, 512
HpyAV CCTTC 2 cut(s) 244, 550
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 2 cut(s) 303, 586
HpyF10VI GCNNNNNNNGC 6 cut(s) 156, 218, 313, 319, 385, 388
HpyF3I CTNAG 1 cut(s) 516
HpySE526I ACGT 1 cut(s) 525
Hsp92II CATG 1 cut(s) 352
HspAI GCGC 1 cut(s) 241
KflI GGGWCCC 1 cut(s) 254
KroI GCCGGC 1 cut(s) 205
KroNI GCCGGC 1 cut(s) 207
Kzo9I GATC 3 cut(s) 416, 430, 631
LguI GCTCTTC 1 cut(s) 85
LmnI GCTCC 3 cut(s) 217, 279, 376
Lsp1109I GCAGC 2 cut(s) 250, 300
LweI GCATC 2 cut(s) 26, 573
MaeII ACGT 1 cut(s) 525
MaeIII GTNAC 3 cut(s) 31, 283, 364
MalI GATC 3 cut(s) 418, 432, 633
MbiI CCGCTC 1 cut(s) 379
MboI GATC 3 cut(s) 416, 430, 631
MboII GAAGA 4 cut(s) 72, 79, 205, 608
MfeI CAATTG 1 cut(s) 557
MflI RGATCY 1 cut(s) 416
MluCI AATT 3 cut(s) 24, 474, 557
MlyI GAGTC 1 cut(s) 234
Mph1103I ATGCAT 1 cut(s) 588
MroNI GCCGGC 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 292
MspI CCGG 4 cut(s) 129, 155, 206, 232
MspR9I CCNGG 4 cut(s) 129, 156, 374, 567
MunI CAATTG 1 cut(s) 557
MvaI CCWGG 2 cut(s) 374, 567
MwoI GCNNNNNNNGC 6 cut(s) 156, 218, 313, 319, 385, 388
NaeI GCCGGC 1 cut(s) 207
NciI CCSGG 2 cut(s) 129, 156
NdeII GATC 3 cut(s) 416, 430, 631
NgoMIV GCCGGC 1 cut(s) 205
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 5 cut(s) 213, 255, 256, 275, 564
NmeAIII GCCGAG 1 cut(s) 430
NmuCI GTSAC 2 cut(s) 31, 364
NsiI ATGCAT 1 cut(s) 588
PaeR7I CTCGAG 1 cut(s) 95
PceI AGGCCT 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 85
PdiI GCCGGC 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 3 cut(s) 330, 460, 484
PkrI GCNGC 6 cut(s) 211, 265, 268, 315, 381, 390
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 254
Psp6I CCWGG 2 cut(s) 372, 565
PspEI GGTNACC 1 cut(s) 283
PspGI CCWGG 2 cut(s) 372, 565
PspN4I GGNNCC 5 cut(s) 213, 255, 256, 275, 564
PspPI GGNCC 2 cut(s) 254, 512
PspPPI RGGWCCY 1 cut(s) 254
PsuI RGATCY 1 cut(s) 416
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
SapI GCTCTTC 1 cut(s) 85
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 6 cut(s) 210, 264, 267, 314, 380, 389
Sau3AI GATC 3 cut(s) 416, 430, 631
Sau96I GGNCC 2 cut(s) 254, 512
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 4 cut(s) 129, 156, 374, 567
SetI ASST 6 cut(s) 265, 309, 324, 528, 568, 597
SfaNI GCATC 2 cut(s) 26, 573
Sfr274I CTCGAG 1 cut(s) 95
SinI GGWCC 2 cut(s) 254, 512
SlaI CTCGAG 1 cut(s) 95
SmlI CTYRAG 2 cut(s) 95, 383
SmoI CTYRAG 2 cut(s) 95, 383
Sse9I AATT 3 cut(s) 24, 474, 557
SseBI AGGCCT 1 cut(s) 150
SsiI CCGC 8 cut(s) 15, 132, 209, 215, 266, 290, 379, 389
StuI AGGCCT 1 cut(s) 150
StyD4I CCNGG 4 cut(s) 127, 154, 372, 565
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 1 cut(s) 528
TaqI TCGA 3 cut(s) 96, 201, 634
TaqII GACCGA 2 cut(s) 177, 500
TasI AATT 3 cut(s) 24, 474, 557
TatI WGTACW 1 cut(s) 519
TauI GCSGC 4 cut(s) 212, 269, 382, 391
TfiI GAWTC 3 cut(s) 330, 460, 484
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 2 cut(s) 31, 364
TseI GCWGC 2 cut(s) 263, 313
Tsp45I GTSAC 2 cut(s) 31, 364
TspDTI ATGAA 1 cut(s) 639
TspGWI ACGGA 1 cut(s) 496
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 2 cut(s) 254, 512
XagI CCTNNNNNAGG 1 cut(s) 350
XapI RAATTY 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 1 cut(s) 563
XhoI CTCGAG 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 197
ZrmI AGTACT 1 cut(s) 521
Zsp2I ATGCAT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.