Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000452.1

Orthogroup ID

OG0000942

Physical Location & Seq

Genomic Coordinates Reverse (-)

156612 .. 158291

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000452.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgaaaaaagtatttgaaccgattcgggactacgactcctttagcaattctacgattgaaatgttcaatgctatggaaaacttgggcctcgctgaagaagctagagagctctttaagcctctctctgaccaagccgtactgcgggatgtggctgtccatactgtggtcatttgggcatatgctgttgctggcaagaccaaggctgttctcaaggcctctcagcacatgatagccactggatgtcttggttccggtgcaactatagttcatggagttcaaaacttgtgggtttcacagccccctccaaatattcaatatgcagatatagtgatttgtggttcgtttattattgaaggcgcttctcttcttgttgccatacaagcagtcaagaaaggtgctgctgctaagggcatgaaattaagagactatatatggcgtggtcatgatcctacctctgttgcagtcatgactgaggatggcgctgctgtagctggtcttgctattgctgcagcattattggttgctgtaaatgtcacaagaaatggaatttactatcctataggttcatttgtggttggcaaggatcttggaatggtggctatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

201

Amino Acids

21.36

Weight (kDa)

6.9

Isoelectric Point (pI)

23.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51610
fragaria_vesca	FvH4_6g16400 FvH4_6g37160
malus_domestica	MD09G1160600.v1.1 MD17G1146400.v1.1
prunus_persica	Prupe.3G019200_v2.0.a1 Prupe.3G019200_v2.0.a1 Prupe.3G019200_v2.0.a1
pyrus_communis	pycom08g05510 pycom09g07920 pycom10g14680 pycom17g13910
rosa_chinensis	RchiOBHm_Chr1g0341791 RchiOBHm_Chr2g0132611 RchiOBHm_Chr2g0145001 RchiOBHm_Chr2g0149771 RchiOBHm_Chr4g0396741 RchiOBHm_Chr5g0067921 RchiOBHm_Chr5g0070701 RchiOBHm_Chr6g0261841 RchiOBHm_Chr6g0284271 RchiOBHm_Chr7g0197681
rosa_laevigata	RLG00000009824
rosa_multiflora	Rmu_co7992122.1_g000001 Rmu_sc0000090.1_g000012 Rmu_sc0000452.1_g000030 Rmu_sc0000780.1_g000002 Rmu_sc0003767.1_g000027 Rmu_sc0004112.1_g000002 Rmu_sc0018143.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097740 Rroxscaffold_2G00117160 Rroxscaffold_2G00121820 Rroxscaffold_2G00126180 Rroxscaffold_6G00389050 Rroxscaffold_6G00399500
rosa_rugosa	Rorug02G0415900 Rorug07G0127900
rosa_samantha	Rh1AG355400 Rh1BG259200 Rh1CG064300 Rh1DG289200 Rh2AG360400 Rh2AG475600 Rh2AG551100 Rh2AG551200 Rh2BG365200 Rh2BG487000 Rh2CG327000 Rh2CG461100 Rh2DG496100 Rh5BG166300 Rh5DG280300 Rh6DG270000 Rh6DG270100 Rh7AG438900 Rh7CG425500
rosa_wichuraiana	Rw0G013420 Rw1G003830 Rw1G031360 Rw2G019280 Rw2G038760 Rw5G047430 Rw6G006480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	163
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	2 cut(s)	440, 591
AcsI	RAATTY	1 cut(s)	546
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	2 cut(s)	141, 163
AgsI	TTSAA	6 cut(s)	17, 59, 67, 278, 314, 353
AluBI	AGCT	3 cut(s)	101, 109, 491
AluI	AGCT	3 cut(s)	101, 109, 491
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	2 cut(s)	440, 591
AoxI	GGCC	2 cut(s)	85, 213
ApeKI	GCWGC	5 cut(s)	398, 401, 482, 506, 509
ApoI	RAATTY	1 cut(s)	546
Asp700I	GAANNNNTTC	1 cut(s)	21
AspLEI	GCGC	2 cut(s)	359, 482
AspS9I	GGNCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	5 cut(s)	385, 388, 469, 493, 521
BccI	CCATC	1 cut(s)	470
BceAI	ACGGC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	417
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	4 cut(s)	261, 486, 507, 558
BfoI	RGCGCY	2 cut(s)	360, 483
BisI	GCNGC	5 cut(s)	399, 402, 483, 507, 510
BlsI	GCNGC	5 cut(s)	400, 403, 484, 508, 511
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	250
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	251
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 163
Bse1I	ACTGG	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	3 cut(s)	151, 245, 481
BseLI	CCNNNNNNNGG	2 cut(s)	141, 163
BseMII	CTCAG	2 cut(s)	233, 462
BseNI	ACTGG	1 cut(s)	241
BseXI	GCAGC	5 cut(s)	385, 388, 469, 493, 521
BshFI	GGCC	2 cut(s)	87, 215
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	141, 163
BsmAI	GTCTC	1 cut(s)	417
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	2 cut(s)	87, 215
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	445, 583
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	2 cut(s)	87, 215
BspCNI	CTCAG	2 cut(s)	232, 463
BspHI	TCATGA	2 cut(s)	442, 465
BspLI	GGNNCC	1 cut(s)	250
BspMAI	CTGCAG	1 cut(s)	511
BspPI	GGATC	2 cut(s)	440, 591
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	2 cut(s)	445, 583
BssT1I	CCWWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	3 cut(s)	219, 405, 471
BstF5I	GGATG	3 cut(s)	151, 245, 481
BstH2I	RGCGCY	2 cut(s)	360, 483
BstHHI	GCGC	2 cut(s)	359, 482
BstKTI	GATC	2 cut(s)	448, 586
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	2 cut(s)	445, 583
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 115, 380, 488, 497, 506
BstSFI	CTRYAG	4 cut(s)	261, 486, 507, 558
BstV1I	GCAGC	5 cut(s)	385, 388, 469, 493, 521
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BsuRI	GGCC	2 cut(s)	87, 215
BtsCI	GGATG	3 cut(s)	151, 245, 481
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	190
CciI	TCATGA	2 cut(s)	442, 465
CfoI	GCGC	2 cut(s)	359, 482
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	137
CspCI	CAANNNNNGTGG	2 cut(s)	266, 301
CviAII	CATG	5 cut(s)	226, 269, 412, 443, 466
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	3 cut(s)	219, 405, 471
DpnI	GATC	2 cut(s)	447, 585
DpnII	GATC	2 cut(s)	445, 583
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	198
Eco147I	AGGCCT	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	5 cut(s)	229, 272, 415, 446, 469
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	5 cut(s)	225, 268, 411, 442, 465
FauI	CCCGC	1 cut(s)	135
FauNDI	CATATG	1 cut(s)	178
Fnu4HI	GCNGC	5 cut(s)	399, 402, 483, 507, 510
FokI	GGATG	3 cut(s)	158, 252, 488
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	5 cut(s)	399, 402, 483, 507, 510
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	2 cut(s)	358, 481
GluI	GCNGC	5 cut(s)	399, 402, 483, 507, 510
HaeII	RGCGCY	2 cut(s)	360, 483
HaeIII	GGCC	2 cut(s)	87, 215
HapII	CCGG	1 cut(s)	252
HhaI	GCGC	2 cut(s)	359, 482
Hin1II	CATG	5 cut(s)	229, 272, 415, 446, 469
Hin6I	GCGC	2 cut(s)	357, 480
HinP1I	GCGC	2 cut(s)	357, 480
HinfI	GANTC	2 cut(s)	22, 35
HpaII	CCGG	1 cut(s)	252
Hpy188I	TCNGA	2 cut(s)	127, 605
Hpy188III	TCNNGA	4 cut(s)	26, 388, 443, 466
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	4 cut(s)	257, 320, 461, 509
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 115, 380, 488, 497, 506
HpyF3I	CTNAG	3 cut(s)	219, 405, 471
Hsp92II	CATG	5 cut(s)	229, 272, 415, 446, 469
HspAI	GCGC	2 cut(s)	357, 480
Kzo9I	GATC	2 cut(s)	445, 583
LpnPI	CCDG	4 cut(s)	174, 222, 265, 477
Lsp1109I	GCAGC	5 cut(s)	385, 388, 469, 493, 521
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	2 cut(s)	447, 585
MboI	GATC	2 cut(s)	445, 583
MboII	GAAGA	2 cut(s)	107, 356
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	3 cut(s)	46, 416, 546
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	6 cut(s)	98, 129, 226, 312, 463, 466
MroXI	GAANNNNTTC	1 cut(s)	21
MseI	TTAA	2 cut(s)	114, 419
MspI	CCGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	6 cut(s)	98, 115, 380, 488, 497, 506
NdeI	CATATG	1 cut(s)	178
NdeII	GATC	2 cut(s)	445, 583
NlaIII	CATG	5 cut(s)	229, 272, 415, 446, 469
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	532
PagI	TCATGA	2 cut(s)	442, 465
PceI	AGGCCT	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	5 cut(s)	400, 403, 484, 508, 511
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	583
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	114, 419
SatI	GCNGC	5 cut(s)	399, 402, 483, 507, 510
Sau3AI	GATC	2 cut(s)	445, 583
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	6 cut(s)	103, 111, 397, 455, 493, 565
SfcI	CTRYAG	4 cut(s)	261, 486, 507, 558
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	46, 416, 546
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	1 cut(s)	142
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	163
TasI	AATT	3 cut(s)	46, 416, 546
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	2 cut(s)	114, 419
Tru9I	TTAA	2 cut(s)	114, 419
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	5 cut(s)	398, 401, 482, 506, 509
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	4 cut(s)	17, 257, 428, 555
TspRI	CASTG	1 cut(s)	241
Van91I	CCANNNNNTGG	1 cut(s)	163
XapI	RAATTY	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	21
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.