Rroxscaffold_6G00389050

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000942
Physical Location & Seq
Reverse (-)
2421446 .. 2423861
2416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389050.1

Sequence Viewer

Length: 645 bp
ATGGGTCAGGGAACTCCAGGCATTTTGAACCGGCAAGGCCTACCGGGCGACCGAAAGCCCAACAACAACGACAAGAAGGAGAAGAAGTTTGAGCTGGTGGCTCCGCCGACCCGAGATCGGCTGAAACCTCAGGAGGAGAAGGCCGAGGAGGACAGATCTAAGGTCAACGATCTACGTGCCTCGCCCAGGAGCGTCGGCAATCTCGAGGAGCTGATCGACGAGAACCACGCGATTGTTTCGTCGTCGGTGGGGCCCGAGTACTATGTGGGCATCCTCTCCTTTGTCGATAAGGACCAGTTGGAGCCTGGGTGTGCCATTTTGATGCACAATAAGTTGGCGAGCGAAGATCTTAATCTTGGTGTGGATGAGAATATACTCTGCAAACACGATGTATGGTGTGTTGCGGGGGTTAGAGGCGCTTCTCTTCTTGTTGCCATACAAGCTGTCAAGAAAGGTGCTGCTGCTGAGGGCATGAAATTAAGAGACTATATATGGCGTGGTCATGATCCTACCTCCGTTGCAGTCATGACTGAGGATGGCGCTGCTGTAGCTGGTCTTGCTATTGCTGCAGCATCATTGGTTGCTGTAAATGTCACAGAAAATGGAATTTACGATCCTATAGGGCAATGGATGACTATGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007276 GO:0007292 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010074 GO:0010078 GO:0010101 GO:0010102 GO:0010243 GO:0010311 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019941 GO:0019953 GO:0022414 GO:0022607 GO:0022622 GO:0022624 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034622 GO:0034976 GO:0035266 GO:0035966 GO:0036402 GO:0036503 GO:0040007 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043254 GO:0043632 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045087 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0046686 GO:0048232 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048532 GO:0048589 GO:0048609 GO:0048646 GO:0048731 GO:0048827 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051704 GO:0051716 GO:0051788 GO:0060255 GO:0060260 GO:0060261 GO:0060968 GO:0061136 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090351 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05165 ko05169 ko05203 map03050 map05165 map05169 map05203
Pfam Domains
Protein Families
AAA

Protein Analysis

214

Amino Acids

23.15

Weight (kDa)

5.18

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 65 - 111 1.6e-09 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 230
AciI CCGC 2 cut(s) 104, 404
AclWI GGATC 2 cut(s) 500, 608
AcsI RAATTY 1 cut(s) 606
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 117, 186
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 3 cut(s) 16, 185, 304
AluBI AGCT 4 cut(s) 94, 211, 443, 551
AluI AGCT 4 cut(s) 94, 211, 443, 551
Alw26I GTCTC 1 cut(s) 477
AlwI GGATC 2 cut(s) 500, 608
Ama87I CYCGRG 3 cut(s) 111, 203, 254
AoxI GGCC 3 cut(s) 37, 141, 251
ApaI GGGCCC 1 cut(s) 255
ApeKI GCWGC 5 cut(s) 458, 461, 542, 566, 569
ApoI RAATTY 1 cut(s) 606
AspLEI GCGC 2 cut(s) 419, 542
AspS9I GGNCC 3 cut(s) 251, 252, 292
AsuC2I CCSGG 1 cut(s) 45
AvaI CYCGRG 3 cut(s) 111, 203, 254
AvaII GGWCC 1 cut(s) 292
AxyI CCTNAGG 1 cut(s) 129
BaeGI GKGCMC 1 cut(s) 255
BanII GRGCYC 1 cut(s) 255
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 5 cut(s) 445, 448, 529, 553, 581
BccI CCATC 1 cut(s) 530
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 3 cut(s) 18, 187, 306
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 477
BfmI CTRYAG 3 cut(s) 546, 567, 618
BfoI RGCGCY 2 cut(s) 420, 543
BglI GCCNNNNNGGC 1 cut(s) 45
BglII AGATCT 2 cut(s) 155, 346
BisI GCNGC 5 cut(s) 459, 462, 543, 567, 570
BlsI GCNGC 5 cut(s) 460, 463, 544, 568, 571
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 4 cut(s) 18, 45, 187, 306
Bme18I GGWCC 1 cut(s) 292
BmeT110I CYCGRG 3 cut(s) 111, 203, 254
BmgT120I GGNCC 3 cut(s) 251, 252, 292
BmiI GGNNCC 4 cut(s) 102, 252, 253, 303
BmrFI CCNGG 4 cut(s) 18, 45, 187, 306
BmsI GCATC 3 cut(s) 279, 312, 581
Bpu10I CCTNAGC 1 cut(s) 465
BpuMI CCSGG 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 176
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 3 cut(s) 144, 185, 305
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 293, 323
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 186
Bse118I RCCGGY 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 295
Bse21I CCTNAGG 1 cut(s) 129
Bse3DI GCAATG 1 cut(s) 632
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 3 cut(s) 18, 187, 306
BseDI CCNNGG 3 cut(s) 144, 185, 305
BseGI GGATG 4 cut(s) 270, 370, 541, 636
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 2 cut(s) 117, 186
BseMI GCAATG 1 cut(s) 632
BseMII CTCAG 3 cut(s) 143, 456, 522
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 3 cut(s) 149, 161, 221
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 5 cut(s) 445, 448, 529, 553, 581
Bsh1236I CGCG 1 cut(s) 230
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 3 cut(s) 39, 143, 253
BsiEI CGRYCG 1 cut(s) 52
BsiHKCI CYCGRG 3 cut(s) 111, 203, 254
BsiSI CCGG 2 cut(s) 31, 44
BslI CCNNNNNNNGG 2 cut(s) 117, 186
BsmAI GTCTC 1 cut(s) 477
BsnI GGCC 3 cut(s) 39, 143, 253
BsoBI CYCGRG 3 cut(s) 111, 203, 254
Bsp120I GGGCCC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 7 cut(s) 115, 155, 169, 213, 346, 505, 613
BspACI CCGC 2 cut(s) 104, 404
BspANI GGCC 3 cut(s) 39, 143, 253
BspCNI CTCAG 3 cut(s) 142, 457, 523
BspFNI CGCG 1 cut(s) 230
BspHI TCATGA 2 cut(s) 502, 525
BspLI GGNNCC 4 cut(s) 102, 252, 253, 303
BspMAI CTGCAG 1 cut(s) 571
BspPI GGATC 2 cut(s) 500, 608
BsrDI GCAATG 1 cut(s) 632
BsrFI RCCGGY 1 cut(s) 30
BsrI ACTGG 1 cut(s) 295
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 3 cut(s) 144, 185, 305
BssMI GATC 7 cut(s) 115, 155, 169, 213, 346, 505, 613
Bst2UI CCWGG 3 cut(s) 18, 187, 306
Bst6I CTCTTC 1 cut(s) 429
BstBAI YACGTR 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 4 cut(s) 129, 159, 465, 531
BstENI CCTNNNNNAGG 1 cut(s) 184
BstF5I GGATG 4 cut(s) 270, 370, 541, 636
BstFNI CGCG 1 cut(s) 230
BstH2I RGCGCY 2 cut(s) 420, 543
BstHHI GCGC 2 cut(s) 419, 542
BstKTI GATC 7 cut(s) 118, 158, 172, 216, 349, 508, 616
BstMAI GTCTC 1 cut(s) 477
BstMBI GATC 7 cut(s) 115, 155, 169, 213, 346, 505, 613
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 5 cut(s) 45, 440, 548, 557, 566
BstNI CCWGG 3 cut(s) 18, 187, 306
BstSCI CCNGG 4 cut(s) 16, 43, 185, 304
BstSFI CTRYAG 3 cut(s) 546, 567, 618
BstSLI GKGCMC 1 cut(s) 255
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 5 cut(s) 445, 448, 529, 553, 581
BstX2I RGATCY 2 cut(s) 155, 346
BstYI RGATCY 2 cut(s) 155, 346
Bsu36I CCTNAGG 1 cut(s) 129
BsuRI GGCC 3 cut(s) 39, 143, 253
BtsCI GGATG 4 cut(s) 270, 370, 541, 636
Cac8I GCNNGC 1 cut(s) 340
CciI TCATGA 2 cut(s) 502, 525
CfoI GCGC 2 cut(s) 419, 542
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 3 cut(s) 251, 252, 292
CseI GACGC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 259
CviAII CATG 3 cut(s) 472, 503, 526
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 4 cut(s) 129, 159, 465, 531
DpnI GATC 7 cut(s) 117, 157, 171, 215, 348, 507, 615
DpnII GATC 7 cut(s) 115, 155, 169, 213, 346, 505, 613
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
EciI GGCGGA 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 292
Eco81I CCTNAGG 1 cut(s) 129
Eco88I CYCGRG 3 cut(s) 111, 203, 254
EcoNI CCTNNNNNAGG 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 251
EcoRII CCWGG 3 cut(s) 16, 185, 304
EcoT38I GRGCYC 1 cut(s) 255
FaeI CATG 3 cut(s) 475, 506, 529
FatI CATG 3 cut(s) 471, 502, 525
FauI CCCGC 1 cut(s) 397
Fnu4HI GCNGC 5 cut(s) 459, 462, 543, 567, 570
FokI GGATG 3 cut(s) 257, 377, 548
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 5 cut(s) 459, 462, 543, 567, 570
GlaI GCGC 2 cut(s) 418, 541
GluI GCNGC 5 cut(s) 459, 462, 543, 567, 570
HaeII RGCGCY 2 cut(s) 420, 543
HaeIII GGCC 3 cut(s) 39, 143, 253
HapII CCGG 2 cut(s) 31, 44
HgaI GACGC 1 cut(s) 181
HhaI GCGC 2 cut(s) 419, 542
Hin1II CATG 3 cut(s) 475, 506, 529
Hin6I GCGC 2 cut(s) 417, 540
HinP1I GCGC 2 cut(s) 417, 540
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HpaII CCGG 2 cut(s) 31, 44
Hpy166II GTNNAC 1 cut(s) 166
Hpy188III TCNNGA 5 cut(s) 131, 203, 448, 503, 526
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 4 cut(s) 197, 221, 244, 247
HpyAV CCTTC 2 cut(s) 70, 133
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 4 cut(s) 325, 381, 521, 569
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 440, 548, 557, 566
HpyF3I CTNAG 4 cut(s) 129, 159, 465, 531
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 3 cut(s) 475, 506, 529
HspAI GCGC 2 cut(s) 417, 540
Kzo9I GATC 7 cut(s) 115, 155, 169, 213, 346, 505, 613
LmnI GCTCC 4 cut(s) 106, 189, 208, 301
Lsp1109I GCAGC 5 cut(s) 445, 448, 529, 553, 581
LweI GCATC 3 cut(s) 279, 312, 581
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 592
MalI GATC 7 cut(s) 117, 157, 171, 215, 348, 507, 615
MboI GATC 7 cut(s) 115, 155, 169, 213, 346, 505, 613
MboII GAAGA 3 cut(s) 94, 356, 416
MflI RGATCY 2 cut(s) 155, 346
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 2 cut(s) 476, 606
MmeI TCCRAC 1 cut(s) 279
MseI TTAA 2 cut(s) 351, 479
MslI CAYNNNNRTG 1 cut(s) 320
MspI CCGG 2 cut(s) 31, 44
MspR9I CCNGG 4 cut(s) 18, 45, 187, 306
MvaI CCWGG 3 cut(s) 18, 187, 306
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 5 cut(s) 45, 440, 548, 557, 566
NciI CCSGG 1 cut(s) 45
NdeII GATC 7 cut(s) 115, 155, 169, 213, 346, 505, 613
NlaIII CATG 3 cut(s) 475, 506, 529
NlaIV GGNNCC 4 cut(s) 102, 252, 253, 303
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 592
PaeR7I CTCGAG 1 cut(s) 203
PagI TCATGA 2 cut(s) 502, 525
PceI AGGCCT 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PkrI GCNGC 5 cut(s) 460, 463, 544, 568, 571
Ppu21I YACGTR 1 cut(s) 176
Psp6I CCWGG 3 cut(s) 16, 185, 304
PspGI CCWGG 3 cut(s) 16, 185, 304
PspN4I GGNNCC 4 cut(s) 102, 252, 253, 303
PspOMI GGGCCC 1 cut(s) 251
PspPI GGNCC 3 cut(s) 251, 252, 292
PstI CTGCAG 1 cut(s) 571
PsuI RGATCY 2 cut(s) 155, 346
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 2 cut(s) 351, 479
SatI GCNGC 5 cut(s) 459, 462, 543, 567, 570
Sau3AI GATC 7 cut(s) 115, 155, 169, 213, 346, 505, 613
Sau96I GGNCC 3 cut(s) 251, 252, 292
ScaI AGTACT 1 cut(s) 260
ScrFI CCNGG 4 cut(s) 18, 45, 187, 306
SduI GDGCHC 1 cut(s) 255
SetI ASST 9 cut(s) 96, 130, 165, 178, 213, 445, 457, 515, 553
SfaNI GCATC 3 cut(s) 279, 312, 581
SfcI CTRYAG 3 cut(s) 546, 567, 618
Sfr274I CTCGAG 1 cut(s) 203
SinI GGWCC 1 cut(s) 292
SlaI CTCGAG 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 2 cut(s) 476, 606
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 2 cut(s) 104, 404
StuI AGGCCT 1 cut(s) 39
StyD4I CCNGG 4 cut(s) 16, 43, 185, 304
TaiI ACGT 1 cut(s) 178
TaqI TCGA 3 cut(s) 204, 216, 285
TaqII GACCGA 1 cut(s) 66
TasI AATT 2 cut(s) 476, 606
TatI WGTACW 1 cut(s) 258
Tru1I TTAA 2 cut(s) 351, 479
Tru9I TTAA 2 cut(s) 351, 479
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 5 cut(s) 458, 461, 542, 566, 569
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 1 cut(s) 488
TspGWI ACGGA 1 cut(s) 505
VpaK11BI GGWCC 1 cut(s) 292
XagI CCTNNNNNAGG 1 cut(s) 184
XapI RAATTY 1 cut(s) 606
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XhoI CTCGAG 1 cut(s) 203
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.