Rh6DG270000

Metal tolerance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000942
Physical Location & Seq
Reverse (-)
46278177 .. 46278500
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG270000.1

Sequence Viewer

Length: 324 bp
ATGACTGAGGATGGCGCTGCTGTAGCTGGTCTTGCTATTGCTGCAGCATCATTGGTTGCTGTAAATGTCACAGGAAATGGAATTTACGATCCTATAGGTTCCATTGTAGTTGGCAACCTTCTTGGAATGGTGGCTATCTTTCTGATACAAAGGAATCGACATGCTTTAATTGGTAGGGCAATGGATGACTATGATGTAGAGAAGGTTCTTCAGTTCTTGAAAAATGACCTGGTTGTCGATTCTTTCCTTTTATTTGTTTTGCACGTGGTGCATTCTTGGTTTTCCTTTTGCTGTTGGCATATTAATTTACATTTTGTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cation_efflux

Protein Analysis

107

Amino Acids

11.73

Weight (kDa)

5.54

Isoelectric Point (pI)

21.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AclWI GGATC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 194
AcvI CACGTG 1 cut(s) 265
AdeI CACNNNGTG 1 cut(s) 268
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AlwI GGATC 1 cut(s) 83
ApeKI GCWGC 3 cut(s) 17, 41, 44
ApoI RAATTY 1 cut(s) 81
AseI ATTAAT 1 cut(s) 303
AspLEI GCGC 1 cut(s) 17
BbrPI CACGTG 1 cut(s) 265
BbvI GCAGC 3 cut(s) 4, 28, 56
BccI CCATC 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 230
BfmI CTRYAG 3 cut(s) 21, 42, 93
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 3 cut(s) 18, 42, 45
BlsI GCNGC 3 cut(s) 19, 43, 46
Bme1390I CCNGG 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 56
BsaAI YACGTR 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 230
BseGI GGATG 2 cut(s) 16, 190
BseMI GCAATG 1 cut(s) 186
BseXI GCAGC 3 cut(s) 4, 28, 56
BsmI GAATGC 1 cut(s) 271
Bsp143I GATC 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 100
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 186
BssMI GATC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 268
BstBAI YACGTR 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 2 cut(s) 16, 190
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 268
BstNI CCWGG 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 3 cut(s) 21, 42, 93
BstV1I GCAGC 3 cut(s) 4, 28, 56
BtsCI GGATG 2 cut(s) 16, 190
CfoI GCGC 1 cut(s) 17
CsiI ACCWGGT 1 cut(s) 228
CviAII CATG 1 cut(s) 161
CviJI RGCY 2 cut(s) 26, 134
CviKI_1 RGCY 2 cut(s) 26, 134
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DraIII CACNNNGTG 1 cut(s) 268
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 194
Eco72I CACGTG 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 228
FaeI CATG 1 cut(s) 164
FaiI YATR 5 cut(s) 95, 162, 192, 300, 320
FatI CATG 1 cut(s) 160
Fnu4HI GCNGC 3 cut(s) 18, 42, 45
FokI GGATG 2 cut(s) 23, 197
Fsp4HI GCNGC 3 cut(s) 18, 42, 45
GlaI GCGC 1 cut(s) 16
GluI GCNGC 3 cut(s) 18, 42, 45
HaeII RGCGCY 1 cut(s) 18
HhaI GCGC 1 cut(s) 17
Hin1II CATG 1 cut(s) 164
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 2 cut(s) 154, 239
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 128, 196
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 44, 262, 271
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 268
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 1 cut(s) 164
HspAI GCGC 1 cut(s) 15
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 4 cut(s) 12, 57, 215, 242
Lsp1109I GCAGC 3 cut(s) 4, 28, 56
LweI GCATC 1 cut(s) 56
MabI ACCWGGT 1 cut(s) 228
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 1 cut(s) 200
MluCI AATT 3 cut(s) 81, 168, 304
MseI TTAA 2 cut(s) 167, 303
MspR9I CCNGG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 41, 268
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 164
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 2 cut(s) 154, 239
PkrI GCNGC 3 cut(s) 19, 43, 46
PmaCI CACGTG 1 cut(s) 265
PmlI CACGTG 1 cut(s) 265
Ppu21I YACGTR 1 cut(s) 265
PshBI ATTAAT 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 228
PspCI CACGTG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 100
PsrI GAACNNNNNNTAC 2 cut(s) 189, 221
PstI CTGCAG 1 cut(s) 46
SaqAI TTAA 2 cut(s) 167, 303
SatI GCNGC 3 cut(s) 18, 42, 45
Sau3AI GATC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 230
SetI ASST 6 cut(s) 28, 100, 120, 207, 231, 267
SexAI ACCWGGT 1 cut(s) 228
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 3 cut(s) 21, 42, 93
Sse9I AATT 3 cut(s) 81, 168, 304
StyD4I CCNGG 1 cut(s) 228
TaiI ACGT 1 cut(s) 267
TaqI TCGA 2 cut(s) 157, 237
TasI AATT 3 cut(s) 81, 168, 304
TfiI GAWTC 2 cut(s) 154, 239
Tru1I TTAA 2 cut(s) 167, 303
Tru9I TTAA 2 cut(s) 167, 303
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 3 cut(s) 17, 41, 44
Tsp45I GTSAC 1 cut(s) 67
VspI ATTAAT 1 cut(s) 303
XapI RAATTY 1 cut(s) 81
XceI RCATGY 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.