Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000942

Physical Location & Seq

Genomic Coordinates Reverse (-)

21400115 .. 21402624

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00399500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAGTACTCTCACTCTCTCCCCGAGTTCGCATCGATTTTGATTCCACCTTCCGCAGTTCCGTGCTCCGGCCATAGAGTCACCTCCCTATTCGAGTTTCAGTCCGCCCGAGCTACCTCCTCCGCCACCATCCACCGAGCCACCTCCACCGCGGTCCGCATCTCCGGATTCTCGCGACATCAAGGACAAGTGGCGGAGTTGGCCGAGGAGTTGGCGAGCGAAGATCTTAATCTTGGTGTGGATGAGAGCTATACTCTGTTTGTATTGAAGAAAGATGGGAAAGCTATTGTTGGGGAGGCCACGATTGAGGCAAACACGGTGTATGGTGCGTTGCGGGGGTTAGAGAAAGTTTCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004563 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0009505 GO:0015929 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00511 ko00513 ko00520 ko00531 ko00603 ko00604 ko01100 ko04142 map00511 map00513 map00520 map00531 map00603 map00604 map01100 map04142

Pfam Domains

Protein Families

Glyco_hydro_20 Glycohydro_20b2

Protein Analysis

119

Amino Acids

12.72

Weight (kDa)

5.5

Isoelectric Point (pI)

30.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycohydro_20b2	PF14845	49 - 115	9.8e-11	beta-acetyl hexosaminidase like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51610
fragaria_vesca	FvH4_6g16400 FvH4_6g37160
malus_domestica	MD09G1160600.v1.1 MD17G1146400.v1.1
prunus_persica	Prupe.3G019200_v2.0.a1 Prupe.3G019200_v2.0.a1 Prupe.3G019200_v2.0.a1
pyrus_communis	pycom08g05510 pycom09g07920 pycom10g14680 pycom17g13910
rosa_chinensis	RchiOBHm_Chr1g0341791 RchiOBHm_Chr2g0132611 RchiOBHm_Chr2g0145001 RchiOBHm_Chr2g0149771 RchiOBHm_Chr4g0396741 RchiOBHm_Chr5g0067921 RchiOBHm_Chr5g0070701 RchiOBHm_Chr6g0261841 RchiOBHm_Chr6g0284271 RchiOBHm_Chr7g0197681
rosa_laevigata	RLG00000009824
rosa_multiflora	Rmu_co7992122.1_g000001 Rmu_sc0000090.1_g000012 Rmu_sc0000452.1_g000030 Rmu_sc0000780.1_g000002 Rmu_sc0003767.1_g000027 Rmu_sc0004112.1_g000002 Rmu_sc0018143.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097740 Rroxscaffold_2G00117160 Rroxscaffold_2G00121820 Rroxscaffold_2G00126180 Rroxscaffold_6G00389050 Rroxscaffold_6G00399500
rosa_rugosa	Rorug02G0415900 Rorug07G0127900
rosa_samantha	Rh1AG355400 Rh1BG259200 Rh1CG064300 Rh1DG289200 Rh2AG360400 Rh2AG475600 Rh2AG551100 Rh2AG551200 Rh2BG365200 Rh2BG487000 Rh2CG327000 Rh2CG461100 Rh2DG496100 Rh5BG166300 Rh5DG280300 Rh6DG270000 Rh6DG270100 Rh7AG438900 Rh7CG425500
rosa_wichuraiana	Rw0G013420 Rw1G003830 Rw1G031360 Rw2G019280 Rw2G038760 Rw5G047430 Rw6G006480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	152, 175
AccIII	TCCGGA	1 cut(s)	164
AciI	CCGC	8 cut(s)	54, 105, 123, 150, 152, 157, 194, 334
AcoI	YGGCCR	2 cut(s)	70, 201
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	268
AluBI	AGCT	3 cut(s)	113, 249, 284
AluI	AGCT	3 cut(s)	113, 249, 284
Alw21I	GWGCWC	1 cut(s)	68
Ama87I	CYCGRG	2 cut(s)	23, 108
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	3 cut(s)	70, 201, 297
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	73
AvaI	CYCGRG	2 cut(s)	23, 108
AvaII	GGWCC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	68
BccI	CCATC	2 cut(s)	137, 269
BglII	AGATCT	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	154
BmeT110I	CYCGRG	2 cut(s)	23, 108
BmgT120I	GGNCC	1 cut(s)	154
BmsI	GCATC	2 cut(s)	41, 168
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
Bsa29I	ATCGAT	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	150, 204
BsaWI	WCCGGW	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse8I	GATNNNNATC	1 cut(s)	228
BseAI	TCCGGA	1 cut(s)	164
BseCI	ATCGAT	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	150, 204
BseGI	GGATG	2 cut(s)	129, 247
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseRI	GAGGAG	2 cut(s)	109, 221
Bsh1236I	CGCG	2 cut(s)	152, 175
BshFI	GGCC	3 cut(s)	72, 203, 299
BshVI	ATCGAT	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	68
BsiHKCI	CYCGRG	2 cut(s)	23, 108
BsiSI	CCGG	2 cut(s)	69, 165
BslI	CCNNNNNNNGG	1 cut(s)	68
BsnI	GGCC	3 cut(s)	72, 203, 299
BsoBI	CYCGRG	2 cut(s)	23, 108
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp13I	TCCGGA	1 cut(s)	164
Bsp143I	GATC	1 cut(s)	223
Bsp68I	TCGCGA	1 cut(s)	175
BspACI	CCGC	8 cut(s)	54, 105, 123, 150, 152, 157, 194, 334
BspANI	GGCC	3 cut(s)	72, 203, 299
BspDI	ATCGAT	1 cut(s)	35
BspEI	TCCGGA	1 cut(s)	164
BspFNI	CGCG	2 cut(s)	152, 175
BssECI	CCNNGG	2 cut(s)	150, 204
BssMI	GATC	1 cut(s)	223
Bst4CI	ACNGT	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	217
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	129, 247
BstFNI	CGCG	2 cut(s)	152, 175
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstUI	CGCG	2 cut(s)	152, 175
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
Bsu15I	ATCGAT	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	72, 203, 299
BsuTUI	ATCGAT	1 cut(s)	35
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	129, 247
BtuMI	TCGCGA	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	154
Cfr42I	CCGCGG	1 cut(s)	153
ClaI	ATCGAT	1 cut(s)	35
CpoI	CGGWCCG	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	7
CspI	CGGWCCG	1 cut(s)	154
CviJI	RGCY	7 cut(s)	72, 113, 140, 203, 249, 284, 299
CviKI_1	RGCY	7 cut(s)	72, 113, 140, 203, 249, 284, 299
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EaeI	YGGCCR	2 cut(s)	70, 201
EciI	GGCGGA	3 cut(s)	94, 112, 209
Eco47I	GGWCC	1 cut(s)	154
Eco88I	CYCGRG	2 cut(s)	23, 108
FaiI	YATR	4 cut(s)	75, 252, 324, 358
FauI	CCCGC	1 cut(s)	327
FokI	GGATG	2 cut(s)	116, 254
HaeIII	GGCC	3 cut(s)	72, 203, 299
HapII	CCGG	2 cut(s)	69, 165
HinfI	GANTC	3 cut(s)	43, 78, 168
HpaII	CCGG	2 cut(s)	69, 165
HphI	GGTGA	1 cut(s)	73
Hpy188III	TCNNGA	2 cut(s)	165, 174
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
Kpn2I	TCCGGA	1 cut(s)	164
KspI	CCGCGG	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	2 cut(s)	82, 178
LweI	GCATC	2 cut(s)	41, 168
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	2 cut(s)	233, 280
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	7 cut(s)	94, 127, 130, 154, 199, 289, 301
MroI	TCCGGA	1 cut(s)	164
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	2 cut(s)	69, 165
MvnI	CGCG	2 cut(s)	152, 175
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	1 cut(s)	223
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	79
NruI	TCGCGA	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	43, 168
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	223
RruI	TCGCGA	1 cut(s)	175
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
Rsr2I	CGGWCCG	1 cut(s)	154
RsrII	CGGWCCG	1 cut(s)	154
SacII	CCGCGG	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	154
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	7 cut(s)	52, 86, 115, 119, 146, 251, 286
SfaNI	GCATC	2 cut(s)	41, 168
Sfr303I	CCGCGG	1 cut(s)	153
SgrBI	CCGCGG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	154
SsiI	CCGC	8 cut(s)	54, 105, 123, 150, 152, 157, 194, 334
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	35, 93
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	2 cut(s)	43, 168
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	79
TspGWI	ACGGA	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	154
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.