Rroxscaffold_2G00126180

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000942
Physical Location & Seq
Forward (+)
61263538 .. 61269193
5656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00126180.1

Sequence Viewer

Length: 393 bp
ATGAAGTCATCAAGGAGATCAATAAGAGGTATGGGCCCAAAGAACATGGTACTGTGGAGGCGAAGCGACGTTGAACTGGTGGTTCCTATCTTGAATATGTGTTTTTGGGGTTTTGGGTTTTCAAGAGAAATTGAAAAGCCTCGAAGGGAGAAGGCGGGGAGGGACGGATCTAAGGTCGACGATCTAAGTGCCTTGCCTAGGAGCGTCGGCAATCTCAAGGAGCTAATCGACGAGAACCACGCGATTGTTTCGTCGTCGGTGGGGCCCGAGTACTATGTGGGCGTCCTCTCCTTTGTCGATAAGGACCGGTTGGAGCACAGGTGCGCCATTTTGATGCACAATAAGGTAATTGGGGTTTTGGGCTTGCTAGGGTTTTTGATTGGGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007276 GO:0007292 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010074 GO:0010078 GO:0010101 GO:0010102 GO:0010243 GO:0010311 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019941 GO:0019953 GO:0022414 GO:0022607 GO:0022622 GO:0022624 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034622 GO:0034976 GO:0035266 GO:0035966 GO:0036402 GO:0036503 GO:0040007 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043254 GO:0043632 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045087 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0046686 GO:0048232 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048532 GO:0048589 GO:0048609 GO:0048646 GO:0048731 GO:0048827 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051704 GO:0051716 GO:0051788 GO:0060255 GO:0060260 GO:0060261 GO:0060968 GO:0061136 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090351 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05165 ko05169 ko05203 map03050 map05165 map05169 map05203
Pfam Domains
Protein Families
AAA

Protein Analysis

130

Amino Acids

14.64

Weight (kDa)

9.69

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 69 - 106 9.1e-08 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 242
AciI CCGC 1 cut(s) 155
AclWI GGATC 1 cut(s) 175
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 2 cut(s) 51, 272
AfiI CCNNNNNNNGG 1 cut(s) 198
AgeI ACCGGT 1 cut(s) 306
AgsI TTSAA 4 cut(s) 74, 94, 123, 134
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw21I GWGCWC 1 cut(s) 318
AlwI GGATC 1 cut(s) 175
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 2 cut(s) 34, 263
ApaI GGGCCC 2 cut(s) 38, 267
AsiGI ACCGGT 1 cut(s) 306
AspA2I CCTAGG 1 cut(s) 197
AspLEI GCGC 1 cut(s) 326
AspS9I GGNCC 5 cut(s) 34, 35, 263, 264, 304
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 1 cut(s) 304
AvrII CCTAGG 1 cut(s) 197
BaeGI GKGCMC 2 cut(s) 38, 267
BanII GRGCYC 2 cut(s) 38, 267
Bbv12I GWGCWC 1 cut(s) 318
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BfaI CTAG 2 cut(s) 198, 368
BlnI CCTAGG 1 cut(s) 197
BmcAI AGTACT 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 5 cut(s) 34, 35, 263, 264, 304
BmiI GGNNCC 4 cut(s) 36, 84, 264, 265
BmsI GCATC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 197
BsaWI WCCGGW 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse118I RCCGGY 1 cut(s) 306
Bse1I ACTGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 81
BseSI GKGCMC 2 cut(s) 38, 267
Bsh1236I CGCG 1 cut(s) 242
BshFI GGCC 2 cut(s) 36, 265
BshTI ACCGGT 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 318
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 1 cut(s) 307
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 2 cut(s) 36, 265
BsoBI CYCGRG 1 cut(s) 266
Bsp120I GGGCCC 2 cut(s) 34, 263
Bsp1286I GDGCHC 3 cut(s) 38, 267, 318
Bsp143I GATC 3 cut(s) 17, 167, 181
BspACI CCGC 1 cut(s) 155
BspANI GGCC 2 cut(s) 36, 265
BspFNI CGCG 1 cut(s) 242
BspLI GGNNCC 4 cut(s) 36, 84, 264, 265
BspPI GGATC 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 306
BsrI ACTGG 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 3 cut(s) 17, 167, 181
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 2 cut(s) 171, 185
BstENI CCTNNNNNAGG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 242
BstHHI GCGC 1 cut(s) 326
BstKTI GATC 3 cut(s) 20, 170, 184
BstMBI GATC 3 cut(s) 17, 167, 181
BstSLI GKGCMC 2 cut(s) 38, 267
BstUI CGCG 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
BsuRI GGCC 2 cut(s) 36, 265
Cac8I GCNNGC 1 cut(s) 365
CfoI GCGC 1 cut(s) 326
Cfr10I RCCGGY 1 cut(s) 306
Cfr13I GGNCC 5 cut(s) 34, 35, 263, 264, 304
CseI GACGC 2 cut(s) 193, 271
Csp6I GTAC 2 cut(s) 50, 271
CspAI ACCGGT 1 cut(s) 306
CviAII CATG 1 cut(s) 46
CviJI RGCY 5 cut(s) 36, 139, 223, 265, 363
CviKI_1 RGCY 5 cut(s) 36, 139, 223, 265, 363
CviQI GTAC 2 cut(s) 50, 271
DdeI CTNAG 2 cut(s) 171, 185
DpnI GATC 3 cut(s) 19, 169, 183
DpnII GATC 3 cut(s) 17, 167, 181
Eco130I CCWWGG 1 cut(s) 197
Eco24I GRGCYC 2 cut(s) 38, 267
Eco47I GGWCC 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 266
EcoNI CCTNNNNNAGG 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 197
EcoT38I GRGCYC 2 cut(s) 38, 267
ErhI CCWWGG 1 cut(s) 197
FaeI CATG 1 cut(s) 49
FaiI YATR 4 cut(s) 32, 47, 98, 276
FaqI GGGAC 1 cut(s) 176
FatI CATG 1 cut(s) 45
FauI CCCGC 1 cut(s) 148
FblI GTMKAC 1 cut(s) 177
FriOI GRGCYC 2 cut(s) 38, 267
FspBI CTAG 2 cut(s) 198, 368
GlaI GCGC 1 cut(s) 325
HaeIII GGCC 2 cut(s) 36, 265
HapII CCGG 1 cut(s) 307
HgaI GACGC 2 cut(s) 193, 271
HhaI GCGC 1 cut(s) 326
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HpaII CCGG 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 178
Hpy188III TCNNGA 2 cut(s) 91, 123
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 6 cut(s) 71, 182, 209, 233, 256, 259
HpyAV CCTTC 2 cut(s) 138, 145
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 337
HpyF3I CTNAG 2 cut(s) 171, 185
HpySE526I ACGT 1 cut(s) 69
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 1 cut(s) 324
Kzo9I GATC 3 cut(s) 17, 167, 181
LmnI GCTCC 3 cut(s) 201, 220, 313
LpnPI CCDG 3 cut(s) 62, 304, 320
LweI GCATC 1 cut(s) 324
MaeI CTAG 2 cut(s) 198, 368
MaeII ACGT 1 cut(s) 69
MalI GATC 3 cut(s) 19, 169, 183
MboI GATC 3 cut(s) 17, 167, 181
MflI RGATCY 1 cut(s) 167
MhlI GDGCHC 3 cut(s) 38, 267, 318
MluCI AATT 2 cut(s) 129, 348
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 6 cut(s) 20, 51, 150, 153, 296, 381
MslI CAYNNNNRTG 1 cut(s) 332
MspI CCGG 1 cut(s) 307
MvnI CGCG 1 cut(s) 242
NdeII GATC 3 cut(s) 17, 167, 181
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 4 cut(s) 36, 84, 264, 265
PinAI ACCGGT 1 cut(s) 306
PspN4I GGNNCC 4 cut(s) 36, 84, 264, 265
PspOMI GGGCCC 2 cut(s) 34, 263
PspPI GGNCC 5 cut(s) 34, 35, 263, 264, 304
PsuI RGATCY 1 cut(s) 167
RsaI GTAC 2 cut(s) 51, 272
RsaNI GTAC 2 cut(s) 50, 271
RseI CAYNNNNRTG 1 cut(s) 332
SalI GTCGAC 1 cut(s) 176
Sau3AI GATC 3 cut(s) 17, 167, 181
Sau96I GGNCC 5 cut(s) 34, 35, 263, 264, 304
ScaI AGTACT 1 cut(s) 272
SduI GDGCHC 3 cut(s) 38, 267, 318
SetI ASST 7 cut(s) 31, 72, 177, 225, 323, 348, 392
SfaNI GCATC 1 cut(s) 324
SinI GGWCC 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 2 cut(s) 129, 348
SsiI CCGC 1 cut(s) 155
SspMI CTAG 2 cut(s) 198, 368
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 1 cut(s) 54
TaiI ACGT 1 cut(s) 72
TaqI TCGA 4 cut(s) 142, 177, 228, 297
TasI AATT 2 cut(s) 129, 348
TatI WGTACW 1 cut(s) 270
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 304
XagI CCTNNNNNAGG 1 cut(s) 196
XmaJI CCTAGG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 2 cut(s) 198, 368
ZrmI AGTACT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.