Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000942

Physical Location & Seq

Genomic Coordinates Reverse (-)

69436002 .. 69441216

Gene Structure 5215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG475600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAGAACGTCGTCGTTTTCTCTCCTCTCTCGCCTCCGCCACTCCCGCCGCTGCTGCTACTCCTCTAACTCTCTGCTTTTCCACTTGGCCCATCAAAACGACGATCGCCGCTCCTCCCAAAACGCGCCGTTTAGCTCCTCCTCCTTTCACTCCTACTCCACTCACACTCAGTTGCAGCGGCTCTTCTCCTCAGCTGCCTCCTCCAAACGGTTCGTTTTGCTCGACTCGCTTCCTTCCCCCGACGCTGTTAATCACCACTTGTTGCATCGAAATTTCTTCACCAGAGCTAAACCTGTTAAACAAGTCAAGCTTGAATTCAATGACCAGCACAGTCAAAGGGCAGTCACAACTGCATTGTGGTGCAACTTCCTAGTGTTTTCGCTCAAGTTCACAGTCTGGTTATCCACCTCCAGCCATGTAATGTTGGCTGAAGTTGTGCATTCCGTTGCTGATTTTGCTAATCAGGCACTTCTTGCTTATGGGTTGAGTAGCTCAAGGCGTGCACCAGATGCTCTCCACCCTTACGGATACTCCAAGGAAAGATTTGTTTGGTCTTTGATATCTGCTGTTGGTATCTTTTGTCTTGGTTCTGGTGCAACTATAGTTCATGGAGTTCAAAACTTGTGGGTTTCACAGCCCCCTCCAAATATTCAATATGCAGCTTTAGTGATTGGTGGTTCGTTTATTATTGAAGGCGCTTCTCTTCTTGTTGCCATACAAGCAGTCAAGAAAGGTGCTGCTGCTGAGGGCATGAAATTAAGAGACTATATATGGCGTGGTCATGATCCTACCTCTGTTGCAGTCATGACTGAGGATGGCGCTGCTGTAGCTGGTCTTGCTATTGCTGCGGCATCATTGGTTGCTGTAAATGTCACAGGAAATGGAATTTACGATCCTATAGGTTCAATTGTAGTTGGCAACCTACTTGGAATGGTATGGACTGCTTCTTGTTATTCACAGTTATGTAGATACTGCAAGAGATTAGTATACTTCTGTTCCAAGGAAATGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

337

Amino Acids

37.0

Weight (kDa)

9.47

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	116 - 312	3e-30	Cation efflux transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51610
fragaria_vesca	FvH4_6g16400 FvH4_6g37160
malus_domestica	MD09G1160600.v1.1 MD17G1146400.v1.1
prunus_persica	Prupe.3G019200_v2.0.a1 Prupe.3G019200_v2.0.a1 Prupe.3G019200_v2.0.a1
pyrus_communis	pycom08g05510 pycom09g07920 pycom10g14680 pycom17g13910
rosa_chinensis	RchiOBHm_Chr1g0341791 RchiOBHm_Chr2g0132611 RchiOBHm_Chr2g0145001 RchiOBHm_Chr2g0149771 RchiOBHm_Chr4g0396741 RchiOBHm_Chr5g0067921 RchiOBHm_Chr5g0070701 RchiOBHm_Chr6g0261841 RchiOBHm_Chr6g0284271 RchiOBHm_Chr7g0197681
rosa_laevigata	RLG00000009824
rosa_multiflora	Rmu_co7992122.1_g000001 Rmu_sc0000090.1_g000012 Rmu_sc0000452.1_g000030 Rmu_sc0000780.1_g000002 Rmu_sc0003767.1_g000027 Rmu_sc0004112.1_g000002 Rmu_sc0018143.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097740 Rroxscaffold_2G00117160 Rroxscaffold_2G00121820 Rroxscaffold_2G00126180 Rroxscaffold_6G00389050 Rroxscaffold_6G00399500
rosa_rugosa	Rorug02G0415900 Rorug07G0127900
rosa_samantha	Rh1AG355400 Rh1BG259200 Rh1CG064300 Rh1DG289200 Rh2AG360400 Rh2AG475600 Rh2AG551100 Rh2AG551200 Rh2BG365200 Rh2BG487000 Rh2CG327000 Rh2CG461100 Rh2DG496100 Rh5BG166300 Rh5DG280300 Rh6DG270000 Rh6DG270100 Rh7AG438900 Rh7CG425500
rosa_wichuraiana	Rw0G013420 Rw1G003830 Rw1G031360 Rw2G019280 Rw2G038760 Rw5G047430 Rw6G006480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	987
AccII	CGCG	1 cut(s)	125
AciI	CCGC	6 cut(s)	37, 46, 49, 109, 178, 848
AclWI	GGATC	2 cut(s)	779, 887
AcsI	RAATTY	3 cut(s)	271, 314, 885
AcuI	CTGAAG	1 cut(s)	450
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	6 cut(s)	314, 319, 617, 653, 692, 906
AluBI	AGCT	7 cut(s)	135, 194, 287, 310, 492, 662, 830
AluI	AGCT	7 cut(s)	135, 194, 287, 310, 492, 662, 830
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	1 cut(s)	756
Alw44I	GTGCAC	1 cut(s)	501
AlwI	GGATC	2 cut(s)	779, 887
AoxI	GGCC	1 cut(s)	87
ApaLI	GTGCAC	1 cut(s)	501
ApeKI	GCWGC	9 cut(s)	51, 54, 175, 194, 659, 737, 740, 821, 845
ApoI	RAATTY	3 cut(s)	271, 314, 885
AspLEI	GCGC	3 cut(s)	127, 698, 821
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	245, 271
BaeGI	GKGCMC	1 cut(s)	505
Bbv12I	GWGCWC	1 cut(s)	505
BbvCI	CCTCAGC	2 cut(s)	190, 744
BbvI	GCAGC	9 cut(s)	38, 41, 181, 187, 671, 724, 727, 808, 832
BccI	CCATC	2 cut(s)	99, 809
BceAI	ACGGC	1 cut(s)	112
BciVI	GTATCC	1 cut(s)	521
BcoDI	GTCTC	1 cut(s)	756
BfaI	CTAG	1 cut(s)	371
BfmI	CTRYAG	3 cut(s)	600, 825, 897
BfoI	RGCGCY	2 cut(s)	699, 822
BfuI	GTATCC	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	88
BmsI	GCATC	3 cut(s)	274, 499, 860
BpmI	CTGGAG	1 cut(s)	394
Bpu10I	CCTNAGC	2 cut(s)	190, 744
BpuEI	CTTGAG	2 cut(s)	368, 478
BsaJI	CCNNGG	2 cut(s)	534, 999
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 515, 545
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	534, 999
BseGI	GGATG	1 cut(s)	820
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	4 cut(s)	182, 204, 735, 801
BseRI	GAGGAG	7 cut(s)	14, 52, 103, 127, 130, 178, 190
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	9 cut(s)	38, 41, 181, 187, 671, 724, 727, 808, 832
Bsh1236I	CGCG	1 cut(s)	125
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	505
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	756
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp143I	GATC	3 cut(s)	103, 784, 892
BspACI	CCGC	6 cut(s)	37, 46, 49, 109, 178, 848
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	4 cut(s)	181, 203, 736, 802
BspFNI	CGCG	1 cut(s)	125
BspHI	TCATGA	2 cut(s)	781, 804
BspPI	GGATC	2 cut(s)	779, 887
BspQI	GCTCTTC	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	534, 999
BssMI	GATC	3 cut(s)	103, 784, 892
BssNAI	GTATAC	1 cut(s)	988
BssT1I	CCWWGG	2 cut(s)	534, 999
Bst1107I	GTATAC	1 cut(s)	988
Bst4CI	ACNGT	4 cut(s)	210, 332, 394, 960
Bst6I	CTCTTC	2 cut(s)	188, 708
BstAPI	GCANNNNNTGC	2 cut(s)	473, 509
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	4 cut(s)	168, 190, 744, 810
BstF5I	GGATG	1 cut(s)	820
BstFNI	CGCG	1 cut(s)	125
BstH2I	RGCGCY	2 cut(s)	699, 822
BstHHI	GCGC	3 cut(s)	127, 698, 821
BstKTI	GATC	3 cut(s)	106, 787, 895
BstMAI	GTCTC	1 cut(s)	756
BstMBI	GATC	3 cut(s)	103, 784, 892
BstMCI	CGRYCG	1 cut(s)	106
BstSFI	CTRYAG	3 cut(s)	600, 825, 897
BstSLI	GKGCMC	1 cut(s)	505
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	9 cut(s)	38, 41, 181, 187, 671, 724, 727, 808, 832
BstZ17I	GTATAC	1 cut(s)	988
BsuI	GTATCC	1 cut(s)	521
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	820
Cac8I	GCNNGC	1 cut(s)	501
CciI	TCATGA	2 cut(s)	781, 804
CfoI	GCGC	3 cut(s)	127, 698, 821
Cfr13I	GGNCC	1 cut(s)	88
CseI	GACGC	1 cut(s)	251
CspCI	CAANNNNNGTGG	2 cut(s)	605, 640
CviAII	CATG	5 cut(s)	416, 608, 751, 782, 805
DdeI	CTNAG	4 cut(s)	168, 190, 744, 810
DpnI	GATC	3 cut(s)	105, 786, 894
DpnII	GATC	3 cut(s)	103, 784, 892
Eam1104I	CTCTTC	2 cut(s)	188, 708
EarI	CTCTTC	2 cut(s)	188, 708
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	534, 999
Eco32I	GATATC	1 cut(s)	561
Eco57I	CTGAAG	1 cut(s)	450
EcoRI	GAATTC	1 cut(s)	314
EcoRV	GATATC	1 cut(s)	561
EcoT14I	CCWWGG	2 cut(s)	534, 999
ErhI	CCWWGG	2 cut(s)	534, 999
FaeI	CATG	5 cut(s)	419, 611, 754, 785, 808
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	5 cut(s)	415, 607, 750, 781, 804
FauI	CCCGC	1 cut(s)	53
FblI	GTMKAC	1 cut(s)	987
FokI	GGATG	1 cut(s)	827
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	3 cut(s)	126, 697, 820
GsuI	CTGGAG	1 cut(s)	394
HaeII	RGCGCY	2 cut(s)	699, 822
HaeIII	GGCC	1 cut(s)	89
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	3 cut(s)	127, 698, 821
Hin1II	CATG	5 cut(s)	419, 611, 754, 785, 808
Hin6I	GCGC	3 cut(s)	125, 696, 819
HinP1I	GCGC	3 cut(s)	125, 696, 819
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	1 cut(s)	224
HphI	GGTGA	2 cut(s)	245, 271
Hpy166II	GTNNAC	3 cut(s)	390, 503, 988
Hpy188III	TCNNGA	3 cut(s)	727, 782, 805
Hpy8I	GTNNAC	3 cut(s)	390, 503, 988
Hpy99I	CGWCG	4 cut(s)	13, 16, 104, 245
HpyAV	CCTTC	2 cut(s)	243, 686
HpyCH4III	ACNGT	4 cut(s)	210, 332, 394, 960
HpyCH4IV	ACGT	1 cut(s)	8
HpyF3I	CTNAG	4 cut(s)	168, 190, 744, 810
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	5 cut(s)	419, 611, 754, 785, 808
HspAI	GCGC	3 cut(s)	125, 696, 819
Kzo9I	GATC	3 cut(s)	103, 784, 892
LguI	GCTCTTC	1 cut(s)	188
LmnI	GCTCC	2 cut(s)	116, 140
Lsp1109I	GCAGC	9 cut(s)	38, 41, 181, 187, 671, 724, 727, 808, 832
LweI	GCATC	3 cut(s)	274, 499, 860
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	2 cut(s)	343, 871
MalI	GATC	3 cut(s)	105, 786, 894
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	3 cut(s)	103, 784, 892
MboII	GAAGA	3 cut(s)	175, 268, 695
MfeI	CAATTG	1 cut(s)	906
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	5 cut(s)	271, 314, 755, 885, 906
MlyI	GAGTC	1 cut(s)	218
MseI	TTAA	3 cut(s)	249, 297, 758
MslI	CAYNNNNRTG	2 cut(s)	358, 961
MspA1I	CMGCKG	3 cut(s)	51, 178, 194
MunI	CAATTG	1 cut(s)	906
Mva1269I	GAATGC	1 cut(s)	439
MvnI	CGCG	1 cut(s)	125
NdeII	GATC	3 cut(s)	103, 784, 892
NlaIII	CATG	5 cut(s)	419, 611, 754, 785, 808
NmuCI	GTSAC	2 cut(s)	343, 871
PagI	TCATGA	2 cut(s)	781, 804
PciSI	GCTCTTC	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PctI	GAATGC	1 cut(s)	439
Ple19I	CGATCG	1 cut(s)	106
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	88
PvuI	CGATCG	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	194
RseI	CAYNNNNRTG	2 cut(s)	358, 961
SapI	GCTCTTC	1 cut(s)	188
SaqAI	TTAA	3 cut(s)	249, 297, 758
Sau3AI	GATC	3 cut(s)	103, 784, 892
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	505
SfaNI	GCATC	3 cut(s)	274, 499, 860
SfcI	CTRYAG	3 cut(s)	600, 825, 897
SmiMI	CAYNNNNRTG	2 cut(s)	358, 961
SmlI	CTYRAG	2 cut(s)	383, 493
SmoI	CTYRAG	2 cut(s)	383, 493
Sse9I	AATT	5 cut(s)	271, 314, 755, 885, 906
SsiI	CCGC	6 cut(s)	37, 46, 49, 109, 178, 848
SspI	AATATT	1 cut(s)	649
SspMI	CTAG	1 cut(s)	371
StyI	CCWWGG	2 cut(s)	534, 999
TaaI	ACNGT	4 cut(s)	210, 332, 394, 960
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	2 cut(s)	222, 268
TasI	AATT	5 cut(s)	271, 314, 755, 885, 906
TauI	GCSGC	4 cut(s)	51, 111, 181, 851
Tru1I	TTAA	3 cut(s)	249, 297, 758
Tru9I	TTAA	3 cut(s)	249, 297, 758
TseFI	GTSAC	2 cut(s)	343, 871
TseI	GCWGC	9 cut(s)	51, 54, 175, 194, 659, 737, 740, 821, 845
Tsp45I	GTSAC	2 cut(s)	343, 871
TspDTI	ATGAA	2 cut(s)	596, 767
TspGWI	ACGGA	2 cut(s)	433, 540
VneI	GTGCAC	1 cut(s)	501
XapI	RAATTY	3 cut(s)	271, 314, 885
XmiI	GTMKAC	1 cut(s)	987
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.