Rmu_co7992122.1_g000001

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7992122.1
Physical Location & Seq
Forward (+)
1 .. 516
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7992122.1_g000001.1.cds

Sequence Viewer

Length: 388 bp
ggcgaggcttccgacggtgacgccgctgaccaagtgcaagctccggctactgaagctggagcggattaaggattacctgcttatggaggagaagtttgtgacgaaccaggagcggctgaagcctgaggaggagaaggccaaggaggacagatctaaggtcgacgatctacgtgcctcgcccatgagcgtcggcaatctcgaggagctgatcgacgagaaccacgcgattgtttcgtcgtcggtggagcccgagtactatgtgggggtcctctcctttgtcgataaggaccagttggagcctgggtgcgccattttgatgcacaataagtcggcgagcgaagatgtgagttgggtttttggtggaattgagattggtttatggaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007276 GO:0007292 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010074 GO:0010078 GO:0010101 GO:0010102 GO:0010243 GO:0010311 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019941 GO:0019953 GO:0022414 GO:0022607 GO:0022622 GO:0022624 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034622 GO:0034976 GO:0035266 GO:0035966 GO:0036402 GO:0036503 GO:0040007 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043254 GO:0043632 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045087 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0046686 GO:0048232 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048532 GO:0048589 GO:0048609 GO:0048646 GO:0048731 GO:0048827 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051704 GO:0051716 GO:0051788 GO:0060255 GO:0060260 GO:0060261 GO:0060968 GO:0061136 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090351 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000112 GO:2000142 GO:2000144 GO:2001141
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

14.58

Weight (kDa)

5.02

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 85
AccBSI CCGCTC 2 cut(s) 62, 113
AccI GTMKAC 1 cut(s) 160
AccII CGCG 1 cut(s) 225
AciI CCGC 3 cut(s) 24, 62, 113
AcuI CTGAAG 2 cut(s) 72, 138
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 83
AjnI CCWGG 2 cut(s) 106, 299
AluBI AGCT 3 cut(s) 41, 56, 206
AluI AGCT 3 cut(s) 41, 56, 206
Ama87I CYCGRG 2 cut(s) 198, 249
AoxI GGCC 1 cut(s) 136
AspLEI GCGC 1 cut(s) 309
AspS9I GGNCC 2 cut(s) 266, 287
AsuHPI GGTGA 1 cut(s) 29
AvaI CYCGRG 2 cut(s) 198, 249
AvaII GGWCC 2 cut(s) 266, 287
AxyI CCTNAGG 1 cut(s) 124
BanII GRGCYC 1 cut(s) 250
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BciT130I CCWGG 2 cut(s) 108, 301
BfuAI ACCTGC 1 cut(s) 85
BglII AGATCT 1 cut(s) 150
BisI GCNGC 2 cut(s) 24, 114
BlsI GCNGC 2 cut(s) 25, 115
BmcAI AGTACT 1 cut(s) 255
Bme1390I CCNGG 2 cut(s) 108, 301
Bme18I GGWCC 2 cut(s) 266, 287
BmeT110I CYCGRG 2 cut(s) 198, 249
BmgT120I GGNCC 2 cut(s) 266, 287
BmiI GGNNCC 3 cut(s) 247, 267, 298
BmrFI CCNGG 2 cut(s) 108, 301
BmsI GCATC 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 139, 300
BsaXI ACNNNNNCTCC 6 cut(s) 78, 108, 237, 267, 288, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 290
Bse21I CCTNAGG 1 cut(s) 124
BseBI CCWGG 2 cut(s) 108, 301
BseDI CCNNGG 2 cut(s) 139, 300
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 290
BseRI GAGGAG 4 cut(s) 102, 141, 144, 216
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 1 cut(s) 138
BsiHKCI CYCGRG 2 cut(s) 198, 249
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 83
BsnI GGCC 1 cut(s) 138
BsoBI CYCGRG 2 cut(s) 198, 249
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 3 cut(s) 150, 164, 208
BspACI CCGC 3 cut(s) 24, 62, 113
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 116
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 3 cut(s) 247, 267, 298
BspMI ACCTGC 1 cut(s) 85
BsrBI CCGCTC 2 cut(s) 62, 113
BsrI ACTGG 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 139, 300
BssMI GATC 3 cut(s) 150, 164, 208
BssNI GRCGYC 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 139
Bst2UI CCWGG 2 cut(s) 108, 301
Bst4CI ACNGT 1 cut(s) 17
BstACI GRCGYC 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 171
BstC8I GCNNGC 2 cut(s) 39, 335
BstDEI CTNAG 2 cut(s) 124, 154
BstFNI CGCG 1 cut(s) 225
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 3 cut(s) 153, 167, 211
BstMBI GATC 3 cut(s) 150, 164, 208
BstMWI GCNNNNNNNGC 2 cut(s) 53, 119
BstNI CCWGG 2 cut(s) 108, 301
BstSCI CCNGG 2 cut(s) 106, 299
BstUI CGCG 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
Bsu36I CCTNAGG 1 cut(s) 124
BsuRI GGCC 1 cut(s) 138
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 2 cut(s) 39, 335
CfoI GCGC 1 cut(s) 309
Cfr13I GGNCC 2 cut(s) 266, 287
CseI GACGC 2 cut(s) 29, 176
Csp6I GTAC 1 cut(s) 254
CviAII CATG 1 cut(s) 182
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 2 cut(s) 124, 154
DpnI GATC 3 cut(s) 152, 166, 210
DpnII GATC 3 cut(s) 150, 164, 208
Eco130I CCWWGG 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 250
Eco47I GGWCC 2 cut(s) 266, 287
Eco57I CTGAAG 2 cut(s) 72, 138
Eco81I CCTNAGG 1 cut(s) 124
Eco88I CYCGRG 2 cut(s) 198, 249
EcoO109I RGGNCCY 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 106, 299
EcoT14I CCWWGG 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 1 cut(s) 185
FaiI YATR 4 cut(s) 84, 183, 259, 380
FatI CATG 1 cut(s) 181
FblI GTMKAC 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 24, 114
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 2 cut(s) 24, 114
GlaI GCGC 1 cut(s) 308
GluI GCNGC 2 cut(s) 24, 114
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 44
HgaI GACGC 2 cut(s) 29, 176
HhaI GCGC 1 cut(s) 309
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 1 cut(s) 185
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HincII GTYRAC 1 cut(s) 161
HindII GTYRAC 1 cut(s) 161
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 1 cut(s) 198
Hpy8I GTNNAC 1 cut(s) 161
Hpy99I CGWCG 6 cut(s) 17, 165, 192, 216, 239, 242
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 2 cut(s) 37, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 119
HpyF3I CTNAG 2 cut(s) 124, 154
HpySE526I ACGT 1 cut(s) 170
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 1 cut(s) 185
HspAI GCGC 1 cut(s) 307
Kzo9I GATC 3 cut(s) 150, 164, 208
LmnI GCTCC 6 cut(s) 46, 59, 110, 203, 245, 296
LpnPI CCDG 9 cut(s) 42, 57, 90, 93, 120, 136, 286, 303, 313
LweI GCATC 1 cut(s) 307
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 2 cut(s) 17, 98
MalI GATC 3 cut(s) 152, 166, 210
MbiI CCGCTC 2 cut(s) 62, 113
MboI GATC 3 cut(s) 150, 164, 208
MboII GAAGA 1 cut(s) 351
MflI RGATCY 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 1 cut(s) 364
MmeI TCCRAC 2 cut(s) 36, 274
MnlI CCTC 7 cut(s) 80, 119, 122, 137, 185, 194, 279
MseI TTAA 1 cut(s) 67
MslI CAYNNNNRTG 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 108, 301
MvaI CCWGG 2 cut(s) 108, 301
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 53, 119
NdeII GATC 3 cut(s) 150, 164, 208
NlaIII CATG 1 cut(s) 185
NlaIV GGNNCC 3 cut(s) 247, 267, 298
NmuCI GTSAC 2 cut(s) 17, 98
PaeR7I CTCGAG 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PkrI GCNGC 2 cut(s) 25, 115
Ppu21I YACGTR 1 cut(s) 171
PpuMI RGGWCCY 1 cut(s) 266
Psp5II RGGWCCY 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 106, 299
PspGI CCWGG 2 cut(s) 106, 299
PspN4I GGNNCC 3 cut(s) 247, 267, 298
PspPI GGNCC 2 cut(s) 266, 287
PspPPI RGGWCCY 1 cut(s) 266
PsuI RGATCY 1 cut(s) 150
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 315
SalI GTCGAC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 67
SatI GCNGC 2 cut(s) 24, 114
Sau3AI GATC 3 cut(s) 150, 164, 208
Sau96I GGNCC 2 cut(s) 266, 287
ScaI AGTACT 1 cut(s) 255
ScrFI CCNGG 2 cut(s) 108, 301
SduI GDGCHC 1 cut(s) 250
SetI ASST 6 cut(s) 43, 58, 79, 160, 173, 208
SfaNI GCATC 1 cut(s) 307
Sfr274I CTCGAG 1 cut(s) 198
SinI GGWCC 2 cut(s) 266, 287
SlaI CTCGAG 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
Sse9I AATT 1 cut(s) 364
SsiI CCGC 3 cut(s) 24, 62, 113
StyD4I CCNGG 2 cut(s) 106, 299
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 1 cut(s) 173
TaqI TCGA 4 cut(s) 160, 199, 211, 280
TasI AATT 1 cut(s) 364
TatI WGTACW 1 cut(s) 253
TauI GCSGC 2 cut(s) 26, 116
Tru1I TTAA 1 cut(s) 67
Tru9I TTAA 1 cut(s) 67
TseFI GTSAC 2 cut(s) 17, 98
Tsp45I GTSAC 2 cut(s) 17, 98
VpaK11BI GGWCC 2 cut(s) 266, 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 297
XhoI CTCGAG 1 cut(s) 198
XmiI GTMKAC 1 cut(s) 160
ZrmI AGTACT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.