Rh5BG166300

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000942
Physical Location & Seq
Forward (+)
17490038 .. 17493385
3348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG166300.1

Sequence Viewer

Length: 327 bp
ATGGAGGAGGAGTTTGTGACGAACCAGGAGCGGCTGAAGCCTCAGGAGGAGAAGGCTGAGGAGGACAGATCTGAGGTCGACGATCTACGTGCCTCGCCCATGAGCGTCGGCAATCTCGAGGAGCTGATCGACGAGAACCACGCGATTGTTTCGTCGTCGGTAGGGCCCGAGTACTATGTGGGGGTCCTCTCCTTTGTCGATAAGGAGCAGTTGGAGCCTGGGTGTGCCATTTTGATGCACAATAAGAAAGATGGGAAAGCTATTGTTGGGGAGGCCACCATTGAGGCAAACACGGTGTATGGTGCGTTGCGGGGGTTAGAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007276 GO:0007292 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010074 GO:0010078 GO:0010101 GO:0010102 GO:0010243 GO:0010311 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019941 GO:0019953 GO:0022414 GO:0022607 GO:0022622 GO:0022624 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034622 GO:0034976 GO:0035266 GO:0035966 GO:0036402 GO:0036503 GO:0040007 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043254 GO:0043632 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045087 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0046686 GO:0048232 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048532 GO:0048589 GO:0048609 GO:0048646 GO:0048731 GO:0048827 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051704 GO:0051716 GO:0051788 GO:0060255 GO:0060260 GO:0060261 GO:0060968 GO:0061136 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090351 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05165 ko05169 ko05203 map03050 map05165 map05169 map05203
Pfam Domains
Protein Families
AAA

Protein Analysis

108

Amino Acids

11.99

Weight (kDa)

4.43

Isoelectric Point (pI)

54.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 36 - 82 4.6e-11 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 31
AccI GTMKAC 1 cut(s) 78
AccII CGCG 1 cut(s) 143
AciI CCGC 2 cut(s) 31, 310
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 1 cut(s) 173
AjnI CCWGG 2 cut(s) 24, 217
AluBI AGCT 2 cut(s) 124, 260
AluI AGCT 2 cut(s) 124, 260
Ama87I CYCGRG 2 cut(s) 116, 167
AoxI GGCC 2 cut(s) 164, 273
ApaI GGGCCC 1 cut(s) 168
AspS9I GGNCC 3 cut(s) 164, 165, 184
AvaI CYCGRG 2 cut(s) 116, 167
AvaII GGWCC 1 cut(s) 184
AxyI CCTNAGG 1 cut(s) 42
BaeGI GKGCMC 1 cut(s) 168
BanII GRGCYC 1 cut(s) 168
BbvCI CCTCAGC 1 cut(s) 57
BccI CCATC 1 cut(s) 245
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 2 cut(s) 26, 219
BglII AGATCT 1 cut(s) 68
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
BmcAI AGTACT 1 cut(s) 173
Bme1390I CCNGG 2 cut(s) 26, 219
Bme18I GGWCC 1 cut(s) 184
BmeT110I CYCGRG 2 cut(s) 116, 167
BmgT120I GGNCC 3 cut(s) 164, 165, 184
BmiI GGNNCC 3 cut(s) 166, 185, 216
BmrFI CCNGG 2 cut(s) 26, 219
BmsI GCATC 1 cut(s) 225
Bpu10I CCTNAGC 1 cut(s) 57
BsaAI YACGTR 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 218
BsaXI ACNNNNNCTCC 3 cut(s) 26, 206, 236
Bse21I CCTNAGG 1 cut(s) 42
BseBI CCWGG 2 cut(s) 26, 219
BseDI CCNNGG 1 cut(s) 218
BseMII CTCAG 3 cut(s) 48, 56, 63
BseRI GAGGAG 5 cut(s) 20, 23, 62, 74, 134
BseSI GKGCMC 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 2 cut(s) 166, 275
BsiHKCI CYCGRG 2 cut(s) 116, 167
BsnI GGCC 2 cut(s) 166, 275
BsoBI CYCGRG 2 cut(s) 116, 167
Bsp120I GGGCCC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 3 cut(s) 68, 82, 126
BspACI CCGC 2 cut(s) 31, 310
BspANI GGCC 2 cut(s) 166, 275
BspCNI CTCAG 3 cut(s) 49, 55, 64
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 3 cut(s) 166, 185, 216
BsrBI CCGCTC 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 3 cut(s) 68, 82, 126
Bst2UI CCWGG 2 cut(s) 26, 219
Bst4CI ACNGT 1 cut(s) 295
BstBAI YACGTR 1 cut(s) 89
BstDEI CTNAG 3 cut(s) 42, 57, 72
BstFNI CGCG 1 cut(s) 143
BstKTI GATC 3 cut(s) 71, 85, 129
BstMBI GATC 3 cut(s) 68, 82, 126
BstMWI GCNNNNNNNGC 2 cut(s) 37, 214
BstNI CCWGG 2 cut(s) 26, 219
BstSCI CCNGG 2 cut(s) 24, 217
BstSLI GKGCMC 1 cut(s) 168
BstUI CGCG 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
Bsu36I CCTNAGG 1 cut(s) 42
BsuRI GGCC 2 cut(s) 166, 275
Cfr13I GGNCC 3 cut(s) 164, 165, 184
CseI GACGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 172
CviAII CATG 1 cut(s) 100
CviJI RGCY 8 cut(s) 34, 40, 56, 124, 166, 217, 260, 275
CviKI_1 RGCY 8 cut(s) 34, 40, 56, 124, 166, 217, 260, 275
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 3 cut(s) 42, 57, 72
DpnI GATC 3 cut(s) 70, 84, 128
DpnII GATC 3 cut(s) 68, 82, 126
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 56
Eco81I CCTNAGG 1 cut(s) 42
Eco88I CYCGRG 2 cut(s) 116, 167
EcoO109I RGGNCCY 2 cut(s) 164, 184
EcoRII CCWGG 2 cut(s) 24, 217
EcoT38I GRGCYC 1 cut(s) 168
FaeI CATG 1 cut(s) 103
FaiI YATR 3 cut(s) 101, 177, 300
FatI CATG 1 cut(s) 99
FauI CCCGC 1 cut(s) 303
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 32
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 32
HaeIII GGCC 2 cut(s) 166, 275
HgaI GACGC 1 cut(s) 94
Hin1II CATG 1 cut(s) 103
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 2 cut(s) 44, 116
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 5 cut(s) 83, 110, 134, 157, 160
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 214
HpyF3I CTNAG 3 cut(s) 42, 57, 72
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 3 cut(s) 68, 82, 126
LmnI GCTCC 4 cut(s) 28, 121, 205, 214
LpnPI CCDG 5 cut(s) 11, 29, 38, 204, 231
LweI GCATC 1 cut(s) 225
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 16
MalI GATC 3 cut(s) 70, 84, 128
MbiI CCGCTC 1 cut(s) 31
MboI GATC 3 cut(s) 68, 82, 126
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 192
MslI CAYNNNNRTG 1 cut(s) 233
MspR9I CCNGG 2 cut(s) 26, 219
MvaI CCWGG 2 cut(s) 26, 219
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 37, 214
NdeII GATC 3 cut(s) 68, 82, 126
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 3 cut(s) 166, 185, 216
NmuCI GTSAC 1 cut(s) 16
PaeR7I CTCGAG 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PkrI GCNGC 1 cut(s) 33
Ppu21I YACGTR 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 24, 217
PspGI CCWGG 2 cut(s) 24, 217
PspN4I GGNNCC 3 cut(s) 166, 185, 216
PspOMI GGGCCC 1 cut(s) 164
PspPI GGNCC 3 cut(s) 164, 165, 184
PspPPI RGGWCCY 1 cut(s) 184
PsuI RGATCY 1 cut(s) 68
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 233
SalI GTCGAC 1 cut(s) 77
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 3 cut(s) 68, 82, 126
Sau96I GGNCC 3 cut(s) 164, 165, 184
ScaI AGTACT 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 26, 219
SduI GDGCHC 1 cut(s) 168
SetI ASST 4 cut(s) 78, 91, 126, 262
SfaNI GCATC 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 116
SinI GGWCC 1 cut(s) 184
SlaI CTCGAG 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SsiI CCGC 2 cut(s) 31, 310
StyD4I CCNGG 2 cut(s) 24, 217
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 1 cut(s) 91
TaqI TCGA 4 cut(s) 78, 117, 129, 198
TatI WGTACW 1 cut(s) 171
TauI GCSGC 1 cut(s) 34
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 184
XhoI CTCGAG 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.