Rh6DG270100

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000942
Physical Location & Seq
Reverse (-)
46280276 .. 46281507
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG270100.1

Sequence Viewer

Length: 498 bp
ATGGAGGAGAAGTTTGTGACGAACCAGGAGCGGCTGAAGCCTGAGGAGGAGAAGGCCAAGGAGGACAGATCTAAGGTCGACGATCTACGTGCCTCGCCCATGAGCGTCGGCAATCTGGAGGAGCTGATCGACGAGAACCACGCGATTGTTTCGTCGTCGGTGGAGCCCGAGTACTATGTGGGGGTCCTCTCCTTTGTCGATAAGGACCAGTTGGAGCCTGGGTGCGCCATTTTGATGCACAATAAGCTTAATCTTGCTATTGTTGGGGAGGCCACCATTGAGGACAGGTCCAAGGTCATAATTATGGATGCTGATGGTACTCGTTCCAAAGCAATTGCAAGATCCTTGAGAAAGCTGGGGCTTAAGATGCCTTACTTGCTTCAAGGTGGCTTTCGATCTTGGGTGAAAGATGGTCTTCGAATTAAAGAACTCAAACCTGAGACAACACTTACCATACTCAATGAGAGCAGTCGGTTGAAATTGAGAAGGATGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007276 GO:0007292 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010074 GO:0010078 GO:0010101 GO:0010102 GO:0010243 GO:0010311 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019941 GO:0019953 GO:0022414 GO:0022607 GO:0022622 GO:0022624 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034622 GO:0034976 GO:0035266 GO:0035966 GO:0036402 GO:0036503 GO:0040007 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043254 GO:0043632 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045087 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0046686 GO:0048232 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048532 GO:0048589 GO:0048609 GO:0048646 GO:0048731 GO:0048827 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051704 GO:0051716 GO:0051788 GO:0060255 GO:0060260 GO:0060261 GO:0060968 GO:0061136 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090351 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05165 ko05169 ko05203 map03050 map05165 map05169 map05203
Pfam Domains
Protein Families
AAA

Protein Analysis

165

Amino Acids

18.79

Weight (kDa)

6.2

Isoelectric Point (pI)

62.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 36 - 86 1.9e-10 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 31
AccI GTMKAC 1 cut(s) 78
AccII CGCG 1 cut(s) 143
AciI CCGC 1 cut(s) 31
AclWI GGATC 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 2 cut(s) 173, 319
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 2 cut(s) 383, 478
AjnI CCWGG 2 cut(s) 24, 217
AluBI AGCT 3 cut(s) 124, 247, 355
AluI AGCT 3 cut(s) 124, 247, 355
Alw26I GTCTC 1 cut(s) 434
AlwI GGATC 1 cut(s) 336
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 2 cut(s) 54, 270
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 3 cut(s) 184, 205, 288
AsuHPI GGTGA 1 cut(s) 415
AsuII TTCGAA 1 cut(s) 418
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 3 cut(s) 184, 205, 288
AxyI CCTNAGG 1 cut(s) 42
BanII GRGCYC 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 407
BccI CCATC 2 cut(s) 308, 404
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 2 cut(s) 26, 219
BcoDI GTCTC 1 cut(s) 434
BfrI CTTAAG 1 cut(s) 362
BglII AGATCT 1 cut(s) 68
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
BmcAI AGTACT 1 cut(s) 173
Bme1390I CCNGG 2 cut(s) 26, 219
Bme18I GGWCC 3 cut(s) 184, 205, 288
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 3 cut(s) 184, 205, 288
BmiI GGNNCC 3 cut(s) 165, 185, 216
BmrFI CCNGG 2 cut(s) 26, 219
BmsI GCATC 3 cut(s) 225, 298, 357
BpiI GAAGAC 1 cut(s) 407
BpmI CTGGAG 1 cut(s) 137
Bpu14I TTCGAA 1 cut(s) 418
BpuEI CTTGAG 1 cut(s) 367
BsaAI YACGTR 1 cut(s) 89
BsaJI CCNNGG 3 cut(s) 57, 218, 291
BsaXI ACNNNNNCTCC 5 cut(s) 26, 155, 185, 206, 236
Bse1I ACTGG 1 cut(s) 208
Bse21I CCTNAGG 1 cut(s) 42
BseBI CCWGG 2 cut(s) 26, 219
BseDI CCNNGG 3 cut(s) 57, 218, 291
BseGI GGATG 2 cut(s) 313, 495
BseMII CTCAG 2 cut(s) 33, 429
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 4 cut(s) 20, 59, 62, 134
BseYI CCCAGC 1 cut(s) 355
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 2 cut(s) 56, 272
BsiHKCI CYCGRG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 434
BsnI GGCC 2 cut(s) 56, 272
BsoBI CYCGRG 1 cut(s) 167
Bsp119I TTCGAA 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 5 cut(s) 68, 82, 126, 341, 395
BspACI CCGC 1 cut(s) 31
BspANI GGCC 2 cut(s) 56, 272
BspCNI CTCAG 2 cut(s) 34, 430
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 3 cut(s) 165, 185, 216
BspPI GGATC 1 cut(s) 336
BspT104I TTCGAA 1 cut(s) 418
BspTI CTTAAG 1 cut(s) 362
BsrBI CCGCTC 1 cut(s) 31
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 3 cut(s) 57, 218, 291
BssMI GATC 5 cut(s) 68, 82, 126, 341, 395
BssT1I CCWWGG 2 cut(s) 57, 291
Bst2UI CCWGG 2 cut(s) 26, 219
BstAFI CTTAAG 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 418
BstDEI CTNAG 3 cut(s) 42, 72, 438
BstF5I GGATG 2 cut(s) 313, 495
BstFNI CGCG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 5 cut(s) 71, 85, 129, 344, 398
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 5 cut(s) 68, 82, 126, 341, 395
BstMWI GCNNNNNNNGC 4 cut(s) 37, 244, 367, 376
BstNI CCWGG 2 cut(s) 26, 219
BstSCI CCNGG 2 cut(s) 24, 217
BstUI CGCG 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 407
BstX2I RGATCY 2 cut(s) 68, 341
BstYI RGATCY 2 cut(s) 68, 341
Bsu36I CCTNAGG 1 cut(s) 42
BsuRI GGCC 2 cut(s) 56, 272
BtsCI GGATG 2 cut(s) 313, 495
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 184, 205, 288
CseI GACGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 172, 318
CviAII CATG 1 cut(s) 100
CviQI GTAC 2 cut(s) 172, 318
DdeI CTNAG 3 cut(s) 42, 72, 438
DpnI GATC 5 cut(s) 70, 84, 128, 343, 397
DpnII GATC 5 cut(s) 68, 82, 126, 341, 395
Eco130I CCWWGG 2 cut(s) 57, 291
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 3 cut(s) 184, 205, 288
Eco57I CTGAAG 1 cut(s) 56
Eco81I CCTNAGG 1 cut(s) 42
Eco88I CYCGRG 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 184
EcoRII CCWGG 2 cut(s) 24, 217
EcoT14I CCWWGG 2 cut(s) 57, 291
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 2 cut(s) 57, 291
FaeI CATG 1 cut(s) 103
FaiI YATR 5 cut(s) 101, 177, 299, 305, 455
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 1 cut(s) 99
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 32
GlaI GCGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 32
GsaI CCCAGC 1 cut(s) 359
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 2 cut(s) 56, 272
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 227
Hin1II CATG 1 cut(s) 103
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HindIII AAGCTT 1 cut(s) 245
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 5 cut(s) 83, 110, 134, 157, 160
HpyAV CCTTC 2 cut(s) 46, 480
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 238, 338
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 244, 367, 376
HpyF3I CTNAG 3 cut(s) 42, 72, 438
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 1 cut(s) 103
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 5 cut(s) 68, 82, 126, 341, 395
LmnI GCTCC 4 cut(s) 28, 121, 163, 214
LweI GCATC 3 cut(s) 225, 298, 357
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 16
MalI GATC 5 cut(s) 70, 84, 128, 343, 397
MbiI CCGCTC 1 cut(s) 31
MboI GATC 5 cut(s) 68, 82, 126, 341, 395
MboII GAAGA 1 cut(s) 407
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 2 cut(s) 68, 341
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 4 cut(s) 300, 333, 420, 479
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 8 cut(s) 37, 40, 55, 103, 112, 197, 262, 274
MseI TTAA 3 cut(s) 249, 363, 423
MslI CAYNNNNRTG 2 cut(s) 233, 302
MspCI CTTAAG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 26, 219
MunI CAATTG 1 cut(s) 333
MvaI CCWGG 2 cut(s) 26, 219
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 4 cut(s) 37, 244, 367, 376
NdeII GATC 5 cut(s) 68, 82, 126, 341, 395
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 3 cut(s) 165, 185, 216
NmuCI GTSAC 1 cut(s) 16
NspV TTCGAA 1 cut(s) 418
PkrI GCNGC 1 cut(s) 33
Ppu21I YACGTR 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 24, 217
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 2 cut(s) 24, 217
PspN4I GGNNCC 3 cut(s) 165, 185, 216
PspPI GGNCC 3 cut(s) 184, 205, 288
PspPPI RGGWCCY 1 cut(s) 184
PsuI RGATCY 2 cut(s) 68, 341
RsaI GTAC 2 cut(s) 173, 319
RsaNI GTAC 2 cut(s) 172, 318
RseI CAYNNNNRTG 2 cut(s) 233, 302
SalI GTCGAC 1 cut(s) 77
SaqAI TTAA 3 cut(s) 249, 363, 423
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 5 cut(s) 68, 82, 126, 341, 395
Sau96I GGNCC 3 cut(s) 184, 205, 288
ScaI AGTACT 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 26, 219
SduI GDGCHC 1 cut(s) 168
SetI ASST 9 cut(s) 78, 91, 126, 249, 290, 297, 357, 388, 439
SfaNI GCATC 3 cut(s) 225, 298, 357
SfuI TTCGAA 1 cut(s) 418
SinI GGWCC 3 cut(s) 184, 205, 288
SmiMI CAYNNNNRTG 2 cut(s) 233, 302
SmlI CTYRAG 2 cut(s) 346, 362
SmoI CTYRAG 2 cut(s) 346, 362
Sse9I AATT 4 cut(s) 300, 333, 420, 479
SsiI CCGC 1 cut(s) 31
StyD4I CCNGG 2 cut(s) 24, 217
StyI CCWWGG 2 cut(s) 57, 291
TaiI ACGT 1 cut(s) 91
TaqI TCGA 5 cut(s) 78, 129, 198, 394, 418
TasI AATT 4 cut(s) 300, 333, 420, 479
TatI WGTACW 1 cut(s) 171
TauI GCSGC 1 cut(s) 34
Tru1I TTAA 3 cut(s) 249, 363, 423
Tru9I TTAA 3 cut(s) 249, 363, 423
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
Vha464I CTTAAG 1 cut(s) 362
VpaK11BI GGWCC 3 cut(s) 184, 205, 288
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.