Rw0G013420

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00602
OG0000942
Physical Location & Seq
Reverse (-)
3628 .. 5565
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013420.1

Sequence Viewer

Length: 753 bp
ATGGGTCAGGGAACTCCGGGCGGTTTGAACCGGCAAGGCCTACCGGGCAACCGAAAGCCCAACGGCAACGACAAGAAGGAGAAGAAGTTCGAGCCGGCGGCTCCGCCGGCCCGAGTGGGCCTCAAGCAGCGGAAACAGAAGGGTCCAGAAGCGGCGGCGAGGCTTCCGACGGTGACGCCGCTGACCAAGTGCAAGCTCCGGCTACTGAAGCTGGAGCGGATTAAGGATTACCTGCTTATGGAGGAGAAGTTTGTGACGAACCAGGAGCGGCTGAAGCCTGAGGAGGAGAAGGCCAAGGAGGACAGATCTAAGGTCGACGATCTACGTGCCTCGCCCATGAGCGTCGGCAATCTCGAGGAGCTGATCGACGAGAACCACGCGATTGTTTCGTCGTCGGTGGAGCCCGAGTACTATGTGGGGGTCCTCTCCTTTGTCGATAAGGACCAGTTGGAGCCTGGGTGCGCCATTTTGATGCACAATAAGAAAGATGGGAAAGCTATTGTTGGGGAGGCCACCATTGAGGACAGGTCCAAGGTCATAATTATGGATGCTGATGGTACTCGTTCCAAAGCAATTGCAAGATCCTTGAGAAAGCTGGGGCTTAAGATGCCTTACTTGCTTCAAGGTGGCTTTCGATCTTGGGTGAAAGATGGTCTTCGAATTAAAGAACTCAAACCTGAGACAACACTTACCATACTCAATGAGGTAGTTATCCCTTTGGGTGCTGCTTGTTCTTCTAATTTCATGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007276 GO:0007292 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010074 GO:0010078 GO:0010101 GO:0010102 GO:0010243 GO:0010311 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019941 GO:0019953 GO:0022414 GO:0022607 GO:0022622 GO:0022624 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034622 GO:0034976 GO:0035266 GO:0035966 GO:0036402 GO:0036503 GO:0040007 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043254 GO:0043632 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045087 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0046686 GO:0048232 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048532 GO:0048589 GO:0048609 GO:0048646 GO:0048731 GO:0048827 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051704 GO:0051716 GO:0051788 GO:0060255 GO:0060260 GO:0060261 GO:0060968 GO:0061136 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090351 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05165 ko05169 ko05203 map03050 map05165 map05169 map05203
Pfam Domains
Protein Families
AAA

Protein Analysis

250

Amino Acids

27.7

Weight (kDa)

9.35

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 115 - 161 2.6e-09 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 240
AccBSI CCGCTC 2 cut(s) 217, 268
AccI GTMKAC 1 cut(s) 315
AccII CGCG 1 cut(s) 380
AciI CCGC 9 cut(s) 21, 98, 104, 130, 152, 155, 179, 217, 268
AclWI GGATC 1 cut(s) 576
AcuI CTGAAG 2 cut(s) 227, 293
AcyI GRCGYC 1 cut(s) 176
AfaI GTAC 2 cut(s) 410, 559
AfiI CCNNNNNNNGG 1 cut(s) 238
AflII CTTAAG 1 cut(s) 602
AgsI TTSAA 2 cut(s) 28, 623
AjnI CCWGG 2 cut(s) 261, 454
AloI GAACNNNNNNTCC 2 cut(s) 71, 103
AluBI AGCT 5 cut(s) 196, 211, 361, 497, 595
AluI AGCT 5 cut(s) 196, 211, 361, 497, 595
Alw26I GTCTC 1 cut(s) 674
AlwI GGATC 1 cut(s) 576
Ama87I CYCGRG 3 cut(s) 111, 353, 404
AoxI GGCC 5 cut(s) 37, 108, 118, 291, 510
ApeKI GCWGC 2 cut(s) 127, 725
Asp700I GAANNNNTTC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 464
AspS9I GGNCC 6 cut(s) 109, 118, 143, 421, 442, 528
AsuC2I CCSGG 2 cut(s) 18, 45
AsuHPI GGTGA 2 cut(s) 184, 655
AsuII TTCGAA 1 cut(s) 658
AvaI CYCGRG 3 cut(s) 111, 353, 404
AvaII GGWCC 4 cut(s) 143, 421, 442, 528
AxyI CCTNAGG 1 cut(s) 279
BanII GRGCYC 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 647
BbvI GCAGC 2 cut(s) 139, 712
BccI CCATC 3 cut(s) 482, 548, 644
BceAI ACGGC 1 cut(s) 79
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 2 cut(s) 263, 456
BcnI CCSGG 2 cut(s) 18, 45
BcoDI GTCTC 1 cut(s) 674
BfrI CTTAAG 1 cut(s) 602
BfuAI ACCTGC 1 cut(s) 240
BglI GCCNNNNNGGC 1 cut(s) 45
BglII AGATCT 1 cut(s) 305
BisI GCNGC 7 cut(s) 99, 128, 153, 156, 179, 269, 726
BlsI GCNGC 7 cut(s) 100, 129, 154, 157, 180, 270, 727
BmcAI AGTACT 1 cut(s) 410
Bme1390I CCNGG 4 cut(s) 18, 45, 263, 456
Bme18I GGWCC 4 cut(s) 143, 421, 442, 528
BmeT110I CYCGRG 3 cut(s) 111, 353, 404
BmgT120I GGNCC 6 cut(s) 109, 118, 143, 421, 442, 528
BmiI GGNNCC 5 cut(s) 102, 144, 402, 422, 453
BmrFI CCNGG 4 cut(s) 18, 45, 263, 456
BmsI GCATC 3 cut(s) 462, 538, 597
BpiI GAAGAC 1 cut(s) 647
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpmI CTGGAG 1 cut(s) 233
Bpu14I TTCGAA 1 cut(s) 658
BpuEI CTTGAG 2 cut(s) 107, 607
BpuMI CCSGG 2 cut(s) 18, 45
BsaAI YACGTR 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 176
BsaJI CCNNGG 3 cut(s) 294, 455, 531
BsaXI ACNNNNNCTCC 8 cut(s) 71, 101, 233, 263, 392, 422, 443, 473
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse118I RCCGGY 3 cut(s) 30, 94, 106
Bse1I ACTGG 1 cut(s) 445
Bse21I CCTNAGG 1 cut(s) 279
BseBI CCWGG 2 cut(s) 263, 456
BseDI CCNNGG 3 cut(s) 294, 455, 531
BseGI GGATG 1 cut(s) 553
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 2 cut(s) 270, 669
BseNI ACTGG 1 cut(s) 445
BseRI GAGGAG 4 cut(s) 257, 296, 299, 371
BseXI GCAGC 2 cut(s) 139, 712
BseYI CCCAGC 1 cut(s) 595
Bsh1236I CGCG 1 cut(s) 380
BshFI GGCC 5 cut(s) 39, 110, 120, 293, 512
BsiHKCI CYCGRG 3 cut(s) 111, 353, 404
BsiSI CCGG 6 cut(s) 17, 31, 44, 95, 107, 199
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 674
BsnI GGCC 5 cut(s) 39, 110, 120, 293, 512
BsoBI CYCGRG 3 cut(s) 111, 353, 404
Bsp119I TTCGAA 1 cut(s) 658
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 5 cut(s) 305, 319, 363, 581, 635
BspACI CCGC 9 cut(s) 21, 98, 104, 130, 152, 155, 179, 217, 268
BspANI GGCC 5 cut(s) 39, 110, 120, 293, 512
BspCNI CTCAG 2 cut(s) 271, 670
BspFNI CGCG 1 cut(s) 380
BspLI GGNNCC 5 cut(s) 102, 144, 402, 422, 453
BspMI ACCTGC 1 cut(s) 240
BspPI GGATC 1 cut(s) 576
BspT104I TTCGAA 1 cut(s) 658
BspTI CTTAAG 1 cut(s) 602
BsrBI CCGCTC 2 cut(s) 217, 268
BsrFI RCCGGY 3 cut(s) 30, 94, 106
BsrI ACTGG 1 cut(s) 445
BssAI RCCGGY 3 cut(s) 30, 94, 106
BssECI CCNNGG 3 cut(s) 294, 455, 531
BssMI GATC 5 cut(s) 305, 319, 363, 581, 635
BssNI GRCGYC 1 cut(s) 176
BssT1I CCWWGG 2 cut(s) 294, 531
Bst2UI CCWGG 2 cut(s) 263, 456
Bst4CI ACNGT 1 cut(s) 172
BstACI GRCGYC 1 cut(s) 176
BstAFI CTTAAG 1 cut(s) 602
BstBAI YACGTR 1 cut(s) 326
BstBI TTCGAA 1 cut(s) 658
BstC8I GCNNGC 3 cut(s) 96, 108, 194
BstDEI CTNAG 4 cut(s) 279, 309, 678, 750
BstF5I GGATG 1 cut(s) 553
BstFNI CGCG 1 cut(s) 380
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 5 cut(s) 308, 322, 366, 584, 638
BstMAI GTCTC 1 cut(s) 674
BstMBI GATC 5 cut(s) 305, 319, 363, 581, 635
BstMWI GCNNNNNNNGC 6 cut(s) 45, 107, 208, 274, 607, 616
BstNI CCWGG 2 cut(s) 263, 456
BstSCI CCNGG 4 cut(s) 16, 43, 261, 454
BstUI CGCG 1 cut(s) 380
BstV1I GCAGC 2 cut(s) 139, 712
BstV2I GAAGAC 1 cut(s) 647
BstX2I RGATCY 2 cut(s) 305, 581
BstYI RGATCY 2 cut(s) 305, 581
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 5 cut(s) 39, 110, 120, 293, 512
BtsCI GGATG 1 cut(s) 553
BveI ACCTGC 1 cut(s) 240
Cac8I GCNNGC 3 cut(s) 96, 108, 194
CfoI GCGC 1 cut(s) 464
Cfr10I RCCGGY 3 cut(s) 30, 94, 106
Cfr13I GGNCC 6 cut(s) 109, 118, 143, 421, 442, 528
CseI GACGC 2 cut(s) 184, 331
Csp6I GTAC 2 cut(s) 409, 558
CviAII CATG 2 cut(s) 337, 745
CviQI GTAC 2 cut(s) 409, 558
DdeI CTNAG 4 cut(s) 279, 309, 678, 750
DpnI GATC 5 cut(s) 307, 321, 365, 583, 637
DpnII GATC 5 cut(s) 305, 319, 363, 581, 635
EciI GGCGGA 1 cut(s) 93
Eco130I CCWWGG 2 cut(s) 294, 531
Eco147I AGGCCT 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 405
Eco47I GGWCC 4 cut(s) 143, 421, 442, 528
Eco57I CTGAAG 2 cut(s) 227, 293
Eco81I CCTNAGG 1 cut(s) 279
Eco88I CYCGRG 3 cut(s) 111, 353, 404
EcoO109I RGGNCCY 1 cut(s) 421
EcoRII CCWGG 2 cut(s) 261, 454
EcoT14I CCWWGG 2 cut(s) 294, 531
EcoT38I GRGCYC 1 cut(s) 405
ErhI CCWWGG 2 cut(s) 294, 531
FaeI CATG 2 cut(s) 340, 748
FaiI YATR 7 cut(s) 239, 338, 414, 539, 545, 695, 746
FalI AAGNNNNNCTT 2 cut(s) 639, 671
FatI CATG 2 cut(s) 336, 744
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 7 cut(s) 99, 128, 153, 156, 179, 269, 726
FokI GGATG 1 cut(s) 560
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 7 cut(s) 99, 128, 153, 156, 179, 269, 726
GlaI GCGC 1 cut(s) 463
GluI GCNGC 7 cut(s) 99, 128, 153, 156, 179, 269, 726
GsaI CCCAGC 1 cut(s) 599
GsuI CTGGAG 1 cut(s) 233
HaeIII GGCC 5 cut(s) 39, 110, 120, 293, 512
HapII CCGG 6 cut(s) 17, 31, 44, 95, 107, 199
HgaI GACGC 2 cut(s) 184, 331
HhaI GCGC 1 cut(s) 464
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 2 cut(s) 340, 748
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HpaII CCGG 6 cut(s) 17, 31, 44, 95, 107, 199
HphI GGTGA 2 cut(s) 184, 655
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 2 cut(s) 146, 353
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 6 cut(s) 172, 320, 347, 371, 394, 397
HpyAV CCTTC 3 cut(s) 70, 133, 283
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 3 cut(s) 192, 475, 578
HpyF10VI GCNNNNNNNGC 6 cut(s) 45, 107, 208, 274, 607, 616
HpyF3I CTNAG 4 cut(s) 279, 309, 678, 750
HpySE526I ACGT 1 cut(s) 325
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 2 cut(s) 340, 748
HspAI GCGC 1 cut(s) 462
KroI GCCGGC 2 cut(s) 94, 106
KroNI GCCGGC 2 cut(s) 96, 108
Kzo9I GATC 5 cut(s) 305, 319, 363, 581, 635
LmnI GCTCC 7 cut(s) 106, 201, 214, 265, 358, 400, 451
Lsp1109I GCAGC 2 cut(s) 139, 712
LweI GCATC 3 cut(s) 462, 538, 597
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 2 cut(s) 172, 253
MalI GATC 5 cut(s) 307, 321, 365, 583, 637
MbiI CCGCTC 2 cut(s) 217, 268
MboI GATC 5 cut(s) 305, 319, 363, 581, 635
MboII GAAGA 3 cut(s) 94, 647, 726
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 2 cut(s) 305, 581
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 4 cut(s) 540, 573, 660, 739
MmeI TCCRAC 2 cut(s) 191, 429
MroNI GCCGGC 2 cut(s) 94, 106
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 3 cut(s) 222, 603, 663
MslI CAYNNNNRTG 2 cut(s) 470, 542
MspA1I CMGCKG 2 cut(s) 130, 181
MspCI CTTAAG 1 cut(s) 602
MspI CCGG 6 cut(s) 17, 31, 44, 95, 107, 199
MspR9I CCNGG 4 cut(s) 18, 45, 263, 456
MunI CAATTG 1 cut(s) 573
MvaI CCWGG 2 cut(s) 263, 456
MvnI CGCG 1 cut(s) 380
MwoI GCNNNNNNNGC 6 cut(s) 45, 107, 208, 274, 607, 616
NaeI GCCGGC 2 cut(s) 96, 108
NciI CCSGG 2 cut(s) 18, 45
NdeII GATC 5 cut(s) 305, 319, 363, 581, 635
NgoMIV GCCGGC 2 cut(s) 94, 106
NlaIII CATG 2 cut(s) 340, 748
NlaIV GGNNCC 5 cut(s) 102, 144, 402, 422, 453
NmuCI GTSAC 2 cut(s) 172, 253
NspV TTCGAA 1 cut(s) 658
PaeR7I CTCGAG 1 cut(s) 353
PceI AGGCCT 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PdiI GCCGGC 2 cut(s) 96, 108
PdmI GAANNNNTTC 1 cut(s) 86
PkrI GCNGC 7 cut(s) 100, 129, 154, 157, 180, 270, 727
Ppu21I YACGTR 1 cut(s) 326
PpuMI RGGWCCY 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 421
Psp6I CCWGG 2 cut(s) 261, 454
PspFI CCCAGC 1 cut(s) 595
PspGI CCWGG 2 cut(s) 261, 454
PspN4I GGNNCC 5 cut(s) 102, 144, 402, 422, 453
PspPI GGNCC 6 cut(s) 109, 118, 143, 421, 442, 528
PspPPI RGGWCCY 1 cut(s) 421
PsuI RGATCY 2 cut(s) 305, 581
RsaI GTAC 2 cut(s) 410, 559
RsaNI GTAC 2 cut(s) 409, 558
RseI CAYNNNNRTG 2 cut(s) 470, 542
SalI GTCGAC 1 cut(s) 314
SaqAI TTAA 3 cut(s) 222, 603, 663
SatI GCNGC 7 cut(s) 99, 128, 153, 156, 179, 269, 726
Sau3AI GATC 5 cut(s) 305, 319, 363, 581, 635
Sau96I GGNCC 6 cut(s) 109, 118, 143, 421, 442, 528
ScaI AGTACT 1 cut(s) 410
ScrFI CCNGG 4 cut(s) 18, 45, 263, 456
SduI GDGCHC 1 cut(s) 405
SfaNI GCATC 3 cut(s) 462, 538, 597
Sfr274I CTCGAG 1 cut(s) 353
SfuI TTCGAA 1 cut(s) 658
SinI GGWCC 4 cut(s) 143, 421, 442, 528
SlaI CTCGAG 1 cut(s) 353
SmiMI CAYNNNNRTG 2 cut(s) 470, 542
SmlI CTYRAG 4 cut(s) 122, 353, 586, 602
SmoI CTYRAG 4 cut(s) 122, 353, 586, 602
Sse9I AATT 4 cut(s) 540, 573, 660, 739
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 9 cut(s) 21, 98, 104, 130, 152, 155, 179, 217, 268
StuI AGGCCT 1 cut(s) 39
StyD4I CCNGG 4 cut(s) 16, 43, 261, 454
StyI CCWWGG 2 cut(s) 294, 531
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 1 cut(s) 328
TaqI TCGA 7 cut(s) 90, 315, 354, 366, 435, 634, 658
TasI AATT 4 cut(s) 540, 573, 660, 739
TatI WGTACW 1 cut(s) 408
TauI GCSGC 5 cut(s) 101, 155, 158, 181, 271
Tru1I TTAA 3 cut(s) 222, 603, 663
Tru9I TTAA 3 cut(s) 222, 603, 663
TseFI GTSAC 2 cut(s) 172, 253
TseI GCWGC 2 cut(s) 127, 725
Tsp45I GTSAC 2 cut(s) 172, 253
TspDTI ATGAA 1 cut(s) 733
Vha464I CTTAAG 1 cut(s) 602
VpaK11BI GGWCC 4 cut(s) 143, 421, 442, 528
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XhoI CTCGAG 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 86
ZrmI AGTACT 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.