Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004112.1

Orthogroup ID

OG0000942

Physical Location & Seq

Genomic Coordinates Reverse (-)

10346 .. 12164

Gene Structure 1819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004112.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgctgctcacttccactgtcaagcaccgcctccctccactccattggcatagccgacccagattgctcgcctccaacgtcaagcaccgtttccctccacttaatcttggtgtggatgagagctatactctgtttgtattgaagaaagatgggaaagttattgttggggaggccacgattgaggtcagtggcaaacacggtgtatggtgcattgcgggggttagaggtgaaactatagttcatggagttcaaaacttgtgggtttcacagccccctccaaatattgaatatgcagatatagtgattggtggttcgtttattattgaaggcgcttctcttcttgttgccatacaagctgtcaagaaaggtgctgctgctgagggcatgaaattaagagactatatatggcgtggtcatgatcctacctttgttgcagtcatgactgaggatggcgctgttgtagctggtcttgctattgctgcagcatcattggttgctgtaaatgtcacaagaaatggaatttacgatcctataggttcatttgtagttggcaaggatcctggaatggtggctatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

192

Amino Acids

20.52

Weight (kDa)

8.71

Isoelectric Point (pI)

25.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51610
fragaria_vesca	FvH4_6g16400 FvH4_6g37160
malus_domestica	MD09G1160600.v1.1 MD17G1146400.v1.1
prunus_persica	Prupe.3G019200_v2.0.a1 Prupe.3G019200_v2.0.a1 Prupe.3G019200_v2.0.a1
pyrus_communis	pycom08g05510 pycom09g07920 pycom10g14680 pycom17g13910
rosa_chinensis	RchiOBHm_Chr1g0341791 RchiOBHm_Chr2g0132611 RchiOBHm_Chr2g0145001 RchiOBHm_Chr2g0149771 RchiOBHm_Chr4g0396741 RchiOBHm_Chr5g0067921 RchiOBHm_Chr5g0070701 RchiOBHm_Chr6g0261841 RchiOBHm_Chr6g0284271 RchiOBHm_Chr7g0197681
rosa_laevigata	RLG00000009824
rosa_multiflora	Rmu_co7992122.1_g000001 Rmu_sc0000090.1_g000012 Rmu_sc0000452.1_g000030 Rmu_sc0000780.1_g000002 Rmu_sc0003767.1_g000027 Rmu_sc0004112.1_g000002 Rmu_sc0018143.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097740 Rroxscaffold_2G00117160 Rroxscaffold_2G00121820 Rroxscaffold_2G00126180 Rroxscaffold_6G00389050 Rroxscaffold_6G00399500
rosa_rugosa	Rorug02G0415900 Rorug07G0127900
rosa_samantha	Rh1AG355400 Rh1BG259200 Rh1CG064300 Rh1DG289200 Rh2AG360400 Rh2AG475600 Rh2AG551100 Rh2AG551200 Rh2BG365200 Rh2BG487000 Rh2CG327000 Rh2CG461100 Rh2DG496100 Rh5BG166300 Rh5DG280300 Rh6DG270000 Rh6DG270100 Rh7AG438900 Rh7CG425500
rosa_wichuraiana	Rw0G013420 Rw1G003830 Rw1G031360 Rw2G019280 Rw2G038760 Rw5G047430 Rw6G006480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	28, 215
AclWI	GGATC	4 cut(s)	413, 521, 551, 564
AcsI	RAATTY	1 cut(s)	519
AgsI	TTSAA	4 cut(s)	142, 251, 287, 326
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	3 cut(s)	123, 356, 464
AluI	AGCT	3 cut(s)	123, 356, 464
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	4 cut(s)	413, 521, 551, 564
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	5 cut(s)	4, 371, 374, 479, 482
ApoI	RAATTY	1 cut(s)	519
AspLEI	GCGC	2 cut(s)	332, 455
AsuHPI	GGTGA	1 cut(s)	239
BamHI	GGATCC	1 cut(s)	556
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	4 cut(s)	358, 361, 466, 494
BccI	CCATC	2 cut(s)	143, 443
BciT130I	CCWGG	1 cut(s)	561
BcoDI	GTCTC	1 cut(s)	390
BfmI	CTRYAG	3 cut(s)	234, 480, 531
BfoI	RGCGCY	2 cut(s)	333, 456
BisI	GCNGC	5 cut(s)	5, 372, 375, 480, 483
BlsI	GCNGC	5 cut(s)	6, 373, 376, 481, 484
Bme1390I	CCNGG	1 cut(s)	561
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	1 cut(s)	561
BmsI	GCATC	1 cut(s)	494
BplI	GAGNNNNNCTC	2 cut(s)	112, 144
Bpu10I	CCTNAGC	1 cut(s)	378
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	561
BseGI	GGATG	2 cut(s)	121, 454
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	369, 435
BseXI	GCAGC	4 cut(s)	358, 361, 466, 494
BshFI	GGCC	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	418, 526, 556
BspACI	CCGC	2 cut(s)	28, 215
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	2 cut(s)	370, 436
BspHI	TCATGA	2 cut(s)	415, 438
BspLI	GGNNCC	1 cut(s)	558
BspMAI	CTGCAG	1 cut(s)	484
BspPI	GGATC	4 cut(s)	413, 521, 551, 564
BsrDI	GCAATG	1 cut(s)	210
BssMI	GATC	3 cut(s)	418, 526, 556
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	3 cut(s)	19, 89, 200
Bst6I	CTCTTC	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	378, 444
BstF5I	GGATG	2 cut(s)	121, 454
BstH2I	RGCGCY	2 cut(s)	333, 456
BstHHI	GCGC	2 cut(s)	332, 455
BstKTI	GATC	3 cut(s)	421, 529, 559
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	3 cut(s)	418, 526, 556
BstMWI	GCNNNNNNNGC	4 cut(s)	353, 461, 470, 479
BstNI	CCWGG	1 cut(s)	561
BstSCI	CCNGG	1 cut(s)	559
BstSFI	CTRYAG	3 cut(s)	234, 480, 531
BstV1I	GCAGC	4 cut(s)	358, 361, 466, 494
BstX2I	RGATCY	1 cut(s)	556
BstXI	CCANNNNNNTGG	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	556
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	121, 454
BtsIMutI	CAGTG	2 cut(s)	15, 193
Cac8I	GCNNGC	1 cut(s)	69
CciI	TCATGA	2 cut(s)	415, 438
CfoI	GCGC	2 cut(s)	332, 455
CspCI	CAANNNNNGTGG	2 cut(s)	239, 274
CviAII	CATG	4 cut(s)	242, 385, 416, 439
CviJI	RGCY	7 cut(s)	54, 123, 173, 271, 356, 464, 572
CviKI_1	RGCY	7 cut(s)	54, 123, 173, 271, 356, 464, 572
DdeI	CTNAG	2 cut(s)	378, 444
DpnI	GATC	3 cut(s)	420, 528, 558
DpnII	GATC	3 cut(s)	418, 526, 556
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	559
FaeI	CATG	4 cut(s)	245, 388, 419, 442
FatI	CATG	4 cut(s)	241, 384, 415, 438
FauI	CCCGC	1 cut(s)	208
Fnu4HI	GCNGC	5 cut(s)	5, 372, 375, 480, 483
FokI	GGATG	2 cut(s)	128, 461
Fsp4HI	GCNGC	5 cut(s)	5, 372, 375, 480, 483
GlaI	GCGC	2 cut(s)	331, 454
GluI	GCNGC	5 cut(s)	5, 372, 375, 480, 483
HaeII	RGCGCY	2 cut(s)	333, 456
HaeIII	GGCC	1 cut(s)	173
HhaI	GCGC	2 cut(s)	332, 455
Hin1II	CATG	4 cut(s)	245, 388, 419, 442
Hin6I	GCGC	2 cut(s)	330, 453
HinP1I	GCGC	2 cut(s)	330, 453
HphI	GGTGA	1 cut(s)	239
Hpy188I	TCNGA	1 cut(s)	578
Hpy188III	TCNNGA	3 cut(s)	361, 416, 439
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	3 cut(s)	19, 89, 200
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	4 cut(s)	210, 293, 434, 482
HpyF10VI	GCNNNNNNNGC	4 cut(s)	353, 461, 470, 479
HpyF3I	CTNAG	2 cut(s)	378, 444
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	4 cut(s)	245, 388, 419, 442
HspAI	GCGC	2 cut(s)	330, 453
Kzo9I	GATC	3 cut(s)	418, 526, 556
LpnPI	CCDG	4 cut(s)	73, 450, 546, 573
Lsp1109I	GCAGC	4 cut(s)	358, 361, 466, 494
LweI	GCATC	1 cut(s)	494
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	3 cut(s)	420, 528, 558
MboI	GATC	3 cut(s)	418, 526, 556
MboII	GAAGA	2 cut(s)	154, 329
MflI	RGATCY	1 cut(s)	556
MluCI	AATT	2 cut(s)	389, 519
MmeI	TCCRAC	1 cut(s)	99
MseI	TTAA	2 cut(s)	102, 392
MspR9I	CCNGG	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	4 cut(s)	353, 461, 470, 479
NdeII	GATC	3 cut(s)	418, 526, 556
NlaIII	CATG	4 cut(s)	245, 388, 419, 442
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	505
PagI	TCATGA	2 cut(s)	415, 438
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	5 cut(s)	6, 373, 376, 481, 484
Psp6I	CCWGG	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	1 cut(s)	558
PstI	CTGCAG	1 cut(s)	484
PsuI	RGATCY	1 cut(s)	556
SaqAI	TTAA	2 cut(s)	102, 392
SatI	GCNGC	5 cut(s)	5, 372, 375, 480, 483
Sau3AI	GATC	3 cut(s)	418, 526, 556
ScrFI	CCNGG	1 cut(s)	561
SetI	ASST	9 cut(s)	81, 125, 186, 229, 358, 370, 428, 466, 538
SfaNI	GCATC	1 cut(s)	494
SfcI	CTRYAG	3 cut(s)	234, 480, 531
Sse9I	AATT	2 cut(s)	389, 519
SsiI	CCGC	2 cut(s)	28, 215
SspI	AATATT	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	559
TaaI	ACNGT	3 cut(s)	19, 89, 200
TaiI	ACGT	1 cut(s)	81
TasI	AATT	2 cut(s)	389, 519
Tru1I	TTAA	2 cut(s)	102, 392
Tru9I	TTAA	2 cut(s)	102, 392
TscAI	CASTG	2 cut(s)	22, 193
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	5 cut(s)	4, 371, 374, 479, 482
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	3 cut(s)	230, 401, 528
TspRI	CASTG	2 cut(s)	22, 193
XapI	RAATTY	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.