Rw1G003830

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000942
Physical Location & Seq
Reverse (-)
7270741 .. 7272241
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G003830.1

Sequence Viewer

Length: 417 bp
ATGGAGGAGAAGTTTGTGACGAACCAGGAGCGGCTGAAGCCTGAGGAGGAGAAGGCCAAGGAGGACAGATCTAAGGTCGACGATCTACGTGCCTCGCCCATGAGCGTCGGCAATCTCGAGGAGCTGATCGACGAGAACCACGCGATTGTTTCGTCGTCGGTGGAGCCCGAGTACTATGTGGGGGTCCTCTCCTTTGTCGATAAGGACCAGTTGGAGCCTGGGTGCGCCATTTTGATGCACAATAAGGACAGGTCCAAGGTCATAATTATGGATGCTGATGGTACTCGTTCCAAAGCAATTGCAAGATCCTTGAGAAAGCTGGGGCTTAAGGCAAGTTTATGTTCTTTTCTGCAAGATAACAAATTGACTGGTCTTATGAAAATAGCTATGCCGTATTTTCAACCACATGCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007276 GO:0007292 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010074 GO:0010078 GO:0010101 GO:0010102 GO:0010243 GO:0010311 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019941 GO:0019953 GO:0022414 GO:0022607 GO:0022622 GO:0022624 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034622 GO:0034976 GO:0035266 GO:0035966 GO:0036402 GO:0036503 GO:0040007 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043254 GO:0043632 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0045087 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0046686 GO:0048232 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048532 GO:0048589 GO:0048609 GO:0048646 GO:0048731 GO:0048827 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051704 GO:0051716 GO:0051788 GO:0060255 GO:0060260 GO:0060261 GO:0060968 GO:0061136 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090351 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05165 ko05169 ko05203 map03050 map05165 map05169 map05203
Pfam Domains
Protein Families
AAA

Protein Analysis

138

Amino Acids

15.55

Weight (kDa)

5.66

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 36 - 82 6.1e-10 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 31
AccI GTMKAC 1 cut(s) 78
AccII CGCG 1 cut(s) 143
AciI CCGC 1 cut(s) 31
AclWI GGATC 1 cut(s) 300
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 2 cut(s) 173, 283
AflII CTTAAG 1 cut(s) 326
AgsI TTSAA 1 cut(s) 401
AjnI CCWGG 2 cut(s) 24, 217
AluBI AGCT 3 cut(s) 124, 319, 386
AluI AGCT 3 cut(s) 124, 319, 386
AlwI GGATC 1 cut(s) 300
Ama87I CYCGRG 2 cut(s) 116, 167
AoxI GGCC 1 cut(s) 54
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 3 cut(s) 184, 205, 252
AvaI CYCGRG 2 cut(s) 116, 167
AvaII GGWCC 3 cut(s) 184, 205, 252
AxyI CCTNAGG 1 cut(s) 42
BanII GRGCYC 1 cut(s) 168
BccI CCATC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 376
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 2 cut(s) 26, 219
BfrI CTTAAG 1 cut(s) 326
BglII AGATCT 1 cut(s) 68
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
BmcAI AGTACT 1 cut(s) 173
Bme1390I CCNGG 2 cut(s) 26, 219
Bme18I GGWCC 3 cut(s) 184, 205, 252
BmeT110I CYCGRG 2 cut(s) 116, 167
BmgT120I GGNCC 3 cut(s) 184, 205, 252
BmiI GGNNCC 3 cut(s) 165, 185, 216
BmrFI CCNGG 2 cut(s) 26, 219
BmsI GCATC 2 cut(s) 225, 262
BpuEI CTTGAG 1 cut(s) 331
BsaAI YACGTR 1 cut(s) 89
BsaJI CCNNGG 3 cut(s) 57, 218, 255
BsaXI ACNNNNNCTCC 5 cut(s) 26, 155, 185, 206, 236
Bse1I ACTGG 2 cut(s) 208, 373
Bse21I CCTNAGG 1 cut(s) 42
BseBI CCWGG 2 cut(s) 26, 219
BseDI CCNNGG 3 cut(s) 57, 218, 255
BseGI GGATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 2 cut(s) 208, 373
BseRI GAGGAG 4 cut(s) 20, 59, 62, 134
BseYI CCCAGC 1 cut(s) 319
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 56
BsiHKCI CYCGRG 2 cut(s) 116, 167
BsnI GGCC 1 cut(s) 56
BsoBI CYCGRG 2 cut(s) 116, 167
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 4 cut(s) 68, 82, 126, 305
BspACI CCGC 1 cut(s) 31
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 34
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 3 cut(s) 165, 185, 216
BspPI GGATC 1 cut(s) 300
BspTI CTTAAG 1 cut(s) 326
BsrBI CCGCTC 1 cut(s) 31
BsrI ACTGG 2 cut(s) 208, 373
BssECI CCNNGG 3 cut(s) 57, 218, 255
BssMI GATC 4 cut(s) 68, 82, 126, 305
BssT1I CCWWGG 2 cut(s) 57, 255
Bst2UI CCWGG 2 cut(s) 26, 219
BstAFI CTTAAG 1 cut(s) 326
BstBAI YACGTR 1 cut(s) 89
BstDEI CTNAG 3 cut(s) 42, 72, 411
BstF5I GGATG 1 cut(s) 277
BstFNI CGCG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 4 cut(s) 71, 85, 129, 308
BstMBI GATC 4 cut(s) 68, 82, 126, 305
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 2 cut(s) 26, 219
BstNSI RCATGY 1 cut(s) 410
BstSCI CCNGG 2 cut(s) 24, 217
BstUI CGCG 1 cut(s) 143
BstX2I RGATCY 2 cut(s) 68, 305
BstYI RGATCY 2 cut(s) 68, 305
Bsu36I CCTNAGG 1 cut(s) 42
BsuRI GGCC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 277
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 184, 205, 252
CseI GACGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 172, 282
CviAII CATG 2 cut(s) 100, 407
CviJI RGCY 9 cut(s) 34, 40, 56, 124, 166, 217, 319, 325, 386
CviKI_1 RGCY 9 cut(s) 34, 40, 56, 124, 166, 217, 319, 325, 386
CviQI GTAC 2 cut(s) 172, 282
DdeI CTNAG 3 cut(s) 42, 72, 411
DpnI GATC 4 cut(s) 70, 84, 128, 307
DpnII GATC 4 cut(s) 68, 82, 126, 305
Eco130I CCWWGG 2 cut(s) 57, 255
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 3 cut(s) 184, 205, 252
Eco57I CTGAAG 1 cut(s) 56
Eco81I CCTNAGG 1 cut(s) 42
Eco88I CYCGRG 2 cut(s) 116, 167
EcoO109I RGGNCCY 1 cut(s) 184
EcoRII CCWGG 2 cut(s) 24, 217
EcoT14I CCWWGG 2 cut(s) 57, 255
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 2 cut(s) 57, 255
FaeI CATG 2 cut(s) 103, 410
FaiI YATR 8 cut(s) 101, 177, 263, 269, 340, 377, 389, 408
FatI CATG 2 cut(s) 99, 406
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 32
GlaI GCGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 32
GsaI CCCAGC 1 cut(s) 323
HaeIII GGCC 1 cut(s) 56
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 227
Hin1II CATG 2 cut(s) 103, 410
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 5 cut(s) 83, 110, 134, 157, 160
HpyAV CCTTC 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 3 cut(s) 238, 302, 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 3 cut(s) 42, 72, 411
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 2 cut(s) 103, 410
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 4 cut(s) 68, 82, 126, 305
LmnI GCTCC 4 cut(s) 28, 121, 163, 214
LpnPI CCDG 9 cut(s) 11, 38, 54, 204, 221, 231, 235, 305, 354
LweI GCATC 2 cut(s) 225, 262
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 16
MalI GATC 4 cut(s) 70, 84, 128, 307
MbiI CCGCTC 1 cut(s) 31
MboI GATC 4 cut(s) 68, 82, 126, 305
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 2 cut(s) 68, 305
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 3 cut(s) 264, 297, 362
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 6 cut(s) 37, 40, 55, 103, 112, 197
MseI TTAA 1 cut(s) 327
MslI CAYNNNNRTG 2 cut(s) 233, 266
MspCI CTTAAG 1 cut(s) 326
MspR9I CCNGG 2 cut(s) 26, 219
MunI CAATTG 1 cut(s) 297
MvaI CCWGG 2 cut(s) 26, 219
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeII GATC 4 cut(s) 68, 82, 126, 305
NlaIII CATG 2 cut(s) 103, 410
NlaIV GGNNCC 3 cut(s) 165, 185, 216
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 1 cut(s) 410
PaeR7I CTCGAG 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PkrI GCNGC 1 cut(s) 33
Ppu21I YACGTR 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 24, 217
PspFI CCCAGC 1 cut(s) 319
PspGI CCWGG 2 cut(s) 24, 217
PspN4I GGNNCC 3 cut(s) 165, 185, 216
PspPI GGNCC 3 cut(s) 184, 205, 252
PspPPI RGGWCCY 1 cut(s) 184
PsuI RGATCY 2 cut(s) 68, 305
RsaI GTAC 2 cut(s) 173, 283
RsaNI GTAC 2 cut(s) 172, 282
RseI CAYNNNNRTG 2 cut(s) 233, 266
SalI GTCGAC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 4 cut(s) 68, 82, 126, 305
Sau96I GGNCC 3 cut(s) 184, 205, 252
ScaI AGTACT 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 26, 219
SduI GDGCHC 1 cut(s) 168
SetI ASST 7 cut(s) 78, 91, 126, 254, 261, 321, 388
SfaNI GCATC 2 cut(s) 225, 262
Sfr274I CTCGAG 1 cut(s) 116
SinI GGWCC 3 cut(s) 184, 205, 252
SlaI CTCGAG 1 cut(s) 116
SmiMI CAYNNNNRTG 2 cut(s) 233, 266
SmlI CTYRAG 3 cut(s) 116, 310, 326
SmoI CTYRAG 3 cut(s) 116, 310, 326
Sse9I AATT 3 cut(s) 264, 297, 362
SsiI CCGC 1 cut(s) 31
StyD4I CCNGG 2 cut(s) 24, 217
StyI CCWWGG 2 cut(s) 57, 255
TaiI ACGT 1 cut(s) 91
TaqI TCGA 4 cut(s) 78, 117, 129, 198
TasI AATT 3 cut(s) 264, 297, 362
TatI WGTACW 1 cut(s) 171
TauI GCSGC 1 cut(s) 34
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 392
Vha464I CTTAAG 1 cut(s) 326
VpaK11BI GGWCC 3 cut(s) 184, 205, 252
XceI RCATGY 1 cut(s) 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 215
XhoI CTCGAG 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.