Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Reverse (-)

31091782 .. 31092456

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g39332.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGATTGGATCTTCCCCTGTGATCCTCGGGCGTGGAACCGCTCGCTTTTTTTTGCCTCATGGCACTATGATCCACGTCACGGACGCTCTTTATGCCCCAAAAGGGCACCGAACCCTGTTGAGCTTTAAGGACATTCGCGCTAATGGCTTTCACTTGGAAACTCATTGTGAAGATGGAACTGAGTTCTTGTGTATCACTTCTCACGAATACGGACGCAAACGTATATTGGAGAAACTCATGAGTCAATCTAGTGGTCTTTACCTTACTACGATTCGGATTATTGAATCCCATGTAGTCGCCAAACAGGATCTTTGGGACTCTGACTCATACAAGCTTTGGCATGATCGACTTGGTCATCCTGGAAGGGACATGATGATCCGAATTCTGCGTAATTCTCATGGACATCCCTTCTTCAAATCAAAACGAAAATATCTGGGAAATGATATCATTTTGAATCATGGTGGTGACGCCTCAACTGGTCACCATGGCCCAAAGGGGACTTTGACGACTCCCGGGCTCGGCACCAACTTCATGGCTGCCGCTTGGCCGCCCCCTCAAGCAATTGAGGCGCGTTGTTCTTCCCTTGATGTGTCGTTGACTCTTTCAAACGCTCATCGTTCATTTTTGCAAAGCTTGCTCTTTAGCGAAAGTAGTATCGAGACCGTCTTACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

225

Amino Acids

25.0

Weight (kDa)

9.22

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
gag_pre-integrs	PF13976	85 - 141	6.9e-08	GAG-pre-integrase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	105, 521
AccBSI	CCGCTC	1 cut(s)	41
AccII	CGCG	2 cut(s)	138, 571
AciI	CCGC	3 cut(s)	39, 540, 548
AclWI	GGATC	5 cut(s)	16, 16, 64, 315, 370
AcoI	YGGCCR	1 cut(s)	545
AcsI	RAATTY	1 cut(s)	381
AcyI	GRCGYC	1 cut(s)	468
AfiI	CCNNNNNNNGG	3 cut(s)	79, 102, 518
AgsI	TTSAA	4 cut(s)	284, 415, 454, 606
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	3 cut(s)	123, 334, 633
AluI	AGCT	3 cut(s)	123, 334, 633
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	5 cut(s)	16, 16, 64, 315, 370
Ama87I	CYCGRG	2 cut(s)	26, 512
AoxI	GGCC	2 cut(s)	487, 545
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	1 cut(s)	381
AspLEI	GCGC	2 cut(s)	140, 571
AspS9I	GGNCC	1 cut(s)	488
AsuC2I	CCSGG	2 cut(s)	513, 514
AsuHPI	GGTGA	2 cut(s)	473, 476
AvaI	CYCGRG	2 cut(s)	26, 512
BaeGI	GKGCMC	1 cut(s)	108
BanI	GGYRCC	2 cut(s)	105, 521
BanII	GRGCYC	1 cut(s)	519
BbvI	GCAGC	1 cut(s)	523
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	360
BcnI	CCSGG	2 cut(s)	513, 514
BcoDI	GTCTC	1 cut(s)	653
BfaI	CTAG	1 cut(s)	249
BisI	GCNGC	3 cut(s)	537, 540, 548
BlsI	GCNGC	3 cut(s)	538, 541, 549
Bme1390I	CCNGG	3 cut(s)	360, 513, 514
BmeT110I	CYCGRG	2 cut(s)	26, 512
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	3 cut(s)	37, 107, 523
BmrFI	CCNGG	3 cut(s)	360, 513, 514
BpuEI	CTTGAG	1 cut(s)	540
BpuMI	CCSGG	2 cut(s)	513, 514
BsaHI	GRCGYC	1 cut(s)	468
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	3 cut(s)	25, 484, 512
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 102, 518
Bse1I	ACTGG	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	3 cut(s)	25, 484, 512
BseGI	GGATG	2 cut(s)	355, 403
BseLI	CCNNNNNNNGG	3 cut(s)	79, 102, 518
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	481
BseSI	GKGCMC	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	523
Bsh1236I	CGCG	2 cut(s)	138, 571
BshFI	GGCC	2 cut(s)	489, 547
BshNI	GGYRCC	2 cut(s)	105, 521
BsiHKCI	CYCGRG	2 cut(s)	26, 512
BsiSI	CCGG	1 cut(s)	513
BslFI	GGGAC	3 cut(s)	329, 380, 511
BslI	CCNNNNNNNGG	3 cut(s)	79, 102, 518
BsmAI	GTCTC	1 cut(s)	653
BsmFI	GGGAC	3 cut(s)	329, 380, 511
BsnI	GGCC	2 cut(s)	489, 547
Bso31I	GGTCTC	1 cut(s)	653
BsoBI	CYCGRG	2 cut(s)	26, 512
Bsp1286I	GDGCHC	2 cut(s)	108, 519
Bsp143I	GATC	6 cut(s)	8, 21, 69, 307, 343, 375
Bsp19I	CCATGG	1 cut(s)	484
BspACI	CCGC	3 cut(s)	39, 540, 548
BspANI	GGCC	2 cut(s)	489, 547
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	2 cut(s)	138, 571
BspHI	TCATGA	1 cut(s)	237
BspLI	GGNNCC	3 cut(s)	37, 107, 523
BspPI	GGATC	5 cut(s)	16, 16, 64, 315, 370
BspT107I	GGYRCC	2 cut(s)	105, 521
BspTNI	GGTCTC	1 cut(s)	653
BsrBI	CCGCTC	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	3 cut(s)	25, 484, 512
BssMI	GATC	6 cut(s)	8, 21, 69, 307, 343, 375
BssNI	GRCGYC	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	484
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	664
BstACI	GRCGYC	1 cut(s)	468
BstAPI	GCANNNNNTGC	1 cut(s)	634
BstC8I	GCNNGC	2 cut(s)	43, 635
BstDEI	CTNAG	1 cut(s)	180
BstDSI	CCRYGG	1 cut(s)	484
BstEII	GGTNACC	1 cut(s)	479
BstF5I	GGATG	2 cut(s)	355, 403
BstFNI	CGCG	2 cut(s)	138, 571
BstHHI	GCGC	2 cut(s)	140, 571
BstKTI	GATC	6 cut(s)	11, 24, 72, 310, 346, 378
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	6 cut(s)	8, 21, 69, 307, 343, 375
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 144, 566, 634
BstNI	CCWGG	1 cut(s)	360
BstPI	GGTNACC	1 cut(s)	479
BstSCI	CCNGG	3 cut(s)	358, 511, 512
BstSLI	GKGCMC	1 cut(s)	108
BstUI	CGCG	2 cut(s)	138, 571
BstV1I	GCAGC	1 cut(s)	523
BstX2I	RGATCY	2 cut(s)	8, 307
BstXI	CCANNNNNNTGG	1 cut(s)	532
BstYI	RGATCY	2 cut(s)	8, 307
BsuRI	GGCC	2 cut(s)	489, 547
BtgI	CCRYGG	1 cut(s)	484
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	355, 403
Cac8I	GCNNGC	2 cut(s)	43, 635
CciI	TCATGA	1 cut(s)	237
CfoI	GCGC	2 cut(s)	140, 571
Cfr13I	GGNCC	1 cut(s)	488
Cfr9I	CCCGGG	1 cut(s)	512
CseI	GACGC	3 cut(s)	92, 222, 476
CviAII	CATG	9 cut(s)	59, 238, 290, 341, 370, 398, 458, 485, 532
CviJI	RGCY	8 cut(s)	123, 147, 334, 489, 517, 536, 547, 633
CviKI_1	RGCY	8 cut(s)	123, 147, 334, 489, 517, 536, 547, 633
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	6 cut(s)	10, 23, 71, 309, 345, 377
DpnII	GATC	6 cut(s)	8, 21, 69, 307, 343, 375
EaeI	YGGCCR	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	519
Eco31I	GGTCTC	1 cut(s)	653
Eco32I	GATATC	1 cut(s)	445
Eco88I	CYCGRG	2 cut(s)	26, 512
Eco91I	GGTNACC	1 cut(s)	479
EcoO65I	GGTNACC	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	358
EcoRV	GATATC	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	9 cut(s)	62, 241, 293, 344, 373, 401, 461, 488, 535
FaqI	GGGAC	3 cut(s)	329, 380, 511
FatI	CATG	9 cut(s)	58, 237, 289, 340, 369, 397, 457, 484, 531
Fnu4HI	GCNGC	3 cut(s)	537, 540, 548
FokI	GGATG	2 cut(s)	342, 390
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	3 cut(s)	537, 540, 548
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	2 cut(s)	139, 570
GluI	GCNGC	3 cut(s)	537, 540, 548
HaeIII	GGCC	2 cut(s)	489, 547
HapII	CCGG	1 cut(s)	513
HgaI	GACGC	3 cut(s)	92, 222, 476
HhaI	GCGC	2 cut(s)	140, 571
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	9 cut(s)	62, 241, 293, 344, 373, 401, 461, 488, 535
Hin6I	GCGC	2 cut(s)	138, 569
HinP1I	GCGC	2 cut(s)	138, 569
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HindIII	AAGCTT	2 cut(s)	332, 631
HinfI	GANTC	8 cut(s)	241, 271, 284, 317, 323, 454, 508, 598
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	2 cut(s)	473, 476
Hpy166II	GTNNAC	1 cut(s)	597
Hpy188I	TCNGA	3 cut(s)	276, 322, 380
Hpy188III	TCNNGA	3 cut(s)	203, 238, 658
Hpy8I	GTNNAC	1 cut(s)	597
HpyAV	CCTTC	2 cut(s)	357, 418
HpyCH4III	ACNGT	1 cut(s)	664
HpyCH4IV	ACGT	2 cut(s)	75, 220
HpyCH4V	TGCA	1 cut(s)	628
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 144, 566, 634
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	2 cut(s)	75, 220
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	9 cut(s)	62, 241, 293, 344, 373, 401, 461, 488, 535
HspAI	GCGC	2 cut(s)	138, 569
Kzo9I	GATC	6 cut(s)	8, 21, 69, 307, 343, 375
LpnPI	CCDG	8 cut(s)	30, 128, 290, 345, 372, 419, 462, 526
Lsp1109I	GCAGC	1 cut(s)	523
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	2 cut(s)	75, 220
MaeIII	GTNAC	3 cut(s)	76, 464, 479
MalI	GATC	6 cut(s)	10, 23, 71, 309, 345, 377
MbiI	CCGCTC	1 cut(s)	41
MboI	GATC	6 cut(s)	8, 21, 69, 307, 343, 375
MboII	GAAGA	4 cut(s)	3, 182, 403, 570
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	2 cut(s)	8, 307
MhlI	GDGCHC	2 cut(s)	108, 519
MluCI	AATT	3 cut(s)	381, 391, 561
MlyI	GAGTC	5 cut(s)	250, 311, 317, 502, 592
MnlI	CCTC	5 cut(s)	35, 66, 481, 559, 564
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	462
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	3 cut(s)	360, 513, 514
MunI	CAATTG	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	2 cut(s)	138, 571
MwoI	GCNNNNNNNGC	4 cut(s)	92, 144, 566, 634
NciI	CCSGG	2 cut(s)	513, 514
NcoI	CCATGG	1 cut(s)	484
NdeII	GATC	6 cut(s)	8, 21, 69, 307, 343, 375
NlaIII	CATG	9 cut(s)	62, 241, 293, 344, 373, 401, 461, 488, 535
NlaIV	GGNNCC	3 cut(s)	37, 107, 523
NmeAIII	GCCGAG	1 cut(s)	498
NmuCI	GTSAC	3 cut(s)	76, 464, 479
PagI	TCATGA	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	271, 284, 454
PflFI	GACNNNGTC	1 cut(s)	351
PfoI	TCCNGGA	1 cut(s)	358
PkrI	GCNGC	3 cut(s)	538, 541, 549
PleI	GAGTC	5 cut(s)	249, 311, 317, 502, 592
PpsI	GAGTC	5 cut(s)	249, 311, 317, 502, 592
Psp6I	CCWGG	1 cut(s)	358
PspEI	GGTNACC	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	3 cut(s)	37, 107, 523
PspPI	GGNCC	1 cut(s)	488
PsuI	RGATCY	2 cut(s)	8, 307
PsyI	GACNNNGTC	1 cut(s)	351
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	3 cut(s)	537, 540, 548
Sau3AI	GATC	6 cut(s)	8, 21, 69, 307, 343, 375
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	5 cut(s)	250, 311, 317, 502, 592
ScrFI	CCNGG	3 cut(s)	360, 513, 514
SduI	GDGCHC	2 cut(s)	108, 519
SetI	ASST	6 cut(s)	78, 125, 223, 264, 336, 635
SmaI	CCCGGG	1 cut(s)	514
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	555
SmoI	CTYRAG	1 cut(s)	555
Sse9I	AATT	3 cut(s)	381, 391, 561
SsiI	CCGC	3 cut(s)	39, 540, 548
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	3 cut(s)	358, 511, 512
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	1 cut(s)	664
TaiI	ACGT	2 cut(s)	78, 223
TaqI	TCGA	2 cut(s)	346, 657
TasI	AATT	3 cut(s)	381, 391, 561
TauI	GCSGC	2 cut(s)	542, 550
TfiI	GAWTC	3 cut(s)	271, 284, 454
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseFI	GTSAC	3 cut(s)	76, 464, 479
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	3 cut(s)	76, 464, 479
TspDTI	ATGAA	2 cut(s)	520, 609
TspGWI	ACGGA	2 cut(s)	95, 225
TspMI	CCCGGG	1 cut(s)	512
Tth111I	GACNNNGTC	1 cut(s)	351
XapI	RAATTY	1 cut(s)	381
XmaI	CCCGGG	1 cut(s)	512
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.