Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003758.1

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Forward (+)

17853 .. 18521

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003758.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgattggatcatcacaagtaataaatgggcaaagaactgccaaatttttgctgcctaatggcacaacatttcaagtcacagacgctctatatgcactaagagctaatcgaaccttattaagtttcaaagctatttgtgccaacggttatcatgtaaaaacacaccgtgagaatggaactgaataccctgatattgcatctaatgactgtggaaggaaacgcatcttagagaaacttatgagtcaatctactggactgtacctcactactatttggatcagtgaatcctatactgtcaccaacaatgaaatgtgggacactgactcatacaggctttggcatgaccgcctagggcaccccggtcgtgacatgatgatccgtattttaaagaactcatatgaaagtttcaaagctatttgtgcaaacagttatccagtagaaacacactgtgagaatggaactgaataccttgatattaactctaatgaatgtggaaggaaacacattttacagaaacttatgaatcaatctagtggactgtacctcactacgattcggatcattgaatcctatgctatcaccaacaatgaaatgtggaacactgactcatacaggctttggcatgaccacctagggcaccccggtcgtgacatgataatccttatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

222

Amino Acids

25.58

Weight (kDa)

7.11

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	354, 636
AciI	CCGC	1 cut(s)	346
AclWI	GGATC	4 cut(s)	16, 284, 370, 566
AcsI	RAATTY	1 cut(s)	44
AdeI	CACNNNGTG	2 cut(s)	167, 449
AfaI	GTAC	2 cut(s)	260, 542
AgsI	TTSAA	4 cut(s)	74, 127, 409, 566
AluBI	AGCT	3 cut(s)	104, 131, 413
AluI	AGCT	3 cut(s)	104, 131, 413
AlwI	GGATC	4 cut(s)	16, 284, 370, 566
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	44
AspA2I	CCTAGG	2 cut(s)	349, 631
AsuC2I	CCSGG	2 cut(s)	360, 642
AsuHPI	GGTGA	2 cut(s)	289, 571
AvrII	CCTAGG	2 cut(s)	349, 631
BaeGI	GKGCMC	2 cut(s)	357, 639
BanI	GGYRCC	2 cut(s)	354, 636
BbvI	GCAGC	1 cut(s)	39
BcgI	CGANNNNNNTGC	4 cut(s)	344, 378, 626, 660
BcnI	CCSGG	2 cut(s)	360, 642
BfaI	CTAG	3 cut(s)	350, 531, 632
BisI	GCNGC	1 cut(s)	53
BlnI	CCTAGG	2 cut(s)	349, 631
BlsI	GCNGC	1 cut(s)	54
Bme1390I	CCNGG	2 cut(s)	360, 642
BmiI	GGNNCC	2 cut(s)	356, 638
BmrFI	CCNGG	2 cut(s)	360, 642
BmsI	GCATC	2 cut(s)	206, 231
BpuMI	CCSGG	2 cut(s)	360, 642
BsaBI	GATNNNNATC	1 cut(s)	557
BsaJI	CCNNGG	4 cut(s)	349, 358, 631, 640
Bse1I	ACTGG	2 cut(s)	256, 434
Bse8I	GATNNNNATC	1 cut(s)	557
BseDI	CCNNGG	4 cut(s)	349, 358, 631, 640
BseJI	GATNNNNATC	1 cut(s)	557
BseNI	ACTGG	2 cut(s)	256, 434
BseSI	GKGCMC	2 cut(s)	357, 639
BseXI	GCAGC	1 cut(s)	39
Bsh1285I	CGRYCG	2 cut(s)	364, 646
BshNI	GGYRCC	2 cut(s)	354, 636
BsiEI	CGRYCG	2 cut(s)	364, 646
BsiSI	CCGG	2 cut(s)	360, 642
BslFI	GGGAC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	329
Bsp1286I	GDGCHC	2 cut(s)	357, 639
Bsp143I	GATC	4 cut(s)	8, 276, 375, 558
BspACI	CCGC	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	356, 638
BspPI	GGATC	4 cut(s)	16, 284, 370, 566
BspT107I	GGYRCC	2 cut(s)	354, 636
BsrI	ACTGG	2 cut(s)	256, 434
BssECI	CCNNGG	4 cut(s)	349, 358, 631, 640
BssMI	GATC	4 cut(s)	8, 276, 375, 558
BssT1I	CCWWGG	2 cut(s)	349, 631
Bst4CI	ACNGT	8 cut(s)	146, 167, 209, 258, 295, 428, 449, 540
BstDEI	CTNAG	2 cut(s)	98, 226
BstKTI	GATC	4 cut(s)	11, 279, 378, 561
BstMBI	GATC	4 cut(s)	8, 276, 375, 558
BstMCI	CGRYCG	2 cut(s)	364, 646
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 101, 137, 419
BstSCI	CCNGG	2 cut(s)	358, 640
BstSLI	GKGCMC	2 cut(s)	357, 639
BstV1I	GCAGC	1 cut(s)	39
BtsIMutI	CAGTG	4 cut(s)	286, 318, 445, 600
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	259, 541
CviAII	CATG	5 cut(s)	152, 341, 370, 623, 652
CviJI	RGCY	5 cut(s)	104, 131, 334, 413, 616
CviKI_1	RGCY	5 cut(s)	104, 131, 334, 413, 616
CviQI	GTAC	2 cut(s)	259, 541
DdeI	CTNAG	2 cut(s)	98, 226
DpnI	GATC	4 cut(s)	10, 278, 377, 560
DpnII	GATC	4 cut(s)	8, 276, 375, 558
DraI	TTTAAA	1 cut(s)	387
DraIII	CACNNNGTG	2 cut(s)	167, 449
Eco130I	CCWWGG	2 cut(s)	349, 631
EcoT14I	CCWWGG	2 cut(s)	349, 631
ErhI	CCWWGG	2 cut(s)	349, 631
FaeI	CATG	5 cut(s)	155, 344, 373, 626, 655
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	5 cut(s)	151, 340, 369, 622, 651
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	3 cut(s)	350, 531, 632
GluI	GCNGC	1 cut(s)	53
HapII	CCGG	2 cut(s)	360, 642
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	5 cut(s)	155, 344, 373, 626, 655
HinfI	GANTC	7 cut(s)	241, 284, 323, 523, 553, 566, 605
HpaII	CCGG	2 cut(s)	360, 642
HphI	GGTGA	2 cut(s)	289, 571
Hpy166II	GTNNAC	1 cut(s)	536
Hpy188I	TCNGA	1 cut(s)	558
Hpy188III	TCNNGA	2 cut(s)	365, 647
Hpy8I	GTNNAC	1 cut(s)	536
HpyAV	CCTTC	2 cut(s)	207, 489
HpyCH4III	ACNGT	8 cut(s)	146, 167, 209, 258, 295, 428, 449, 540
HpyCH4V	TGCA	3 cut(s)	95, 197, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 101, 137, 419
HpyF3I	CTNAG	2 cut(s)	98, 226
Hsp92II	CATG	5 cut(s)	155, 344, 373, 626, 655
Kzo9I	GATC	4 cut(s)	8, 276, 375, 558
LpnPI	CCDG	7 cut(s)	201, 237, 316, 373, 447, 598, 655
Lsp1109I	GCAGC	1 cut(s)	39
LweI	GCATC	2 cut(s)	206, 231
MaeI	CTAG	3 cut(s)	350, 531, 632
MaeIII	GTNAC	4 cut(s)	76, 295, 365, 647
MalI	GATC	4 cut(s)	10, 278, 377, 560
MboI	GATC	4 cut(s)	8, 276, 375, 558
MhlI	GDGCHC	2 cut(s)	357, 639
MluCI	AATT	1 cut(s)	44
MlyI	GAGTC	3 cut(s)	250, 317, 599
MnlI	CCTC	2 cut(s)	272, 554
MseI	TTAA	4 cut(s)	119, 386, 477, 667
MspI	CCGG	2 cut(s)	360, 642
MspR9I	CCNGG	2 cut(s)	360, 642
MwoI	GCNNNNNNNGC	4 cut(s)	92, 101, 137, 419
NciI	CCSGG	2 cut(s)	360, 642
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	4 cut(s)	8, 276, 375, 558
NlaIII	CATG	5 cut(s)	155, 344, 373, 626, 655
NlaIV	GGNNCC	2 cut(s)	356, 638
NmuCI	GTSAC	4 cut(s)	76, 295, 365, 647
PfeI	GAWTC	4 cut(s)	284, 523, 553, 566
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	3 cut(s)	249, 317, 599
PpsI	GAGTC	3 cut(s)	249, 317, 599
PspN4I	GGNNCC	2 cut(s)	356, 638
RsaI	GTAC	2 cut(s)	260, 542
RsaNI	GTAC	2 cut(s)	259, 541
SaqAI	TTAA	4 cut(s)	119, 386, 477, 667
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	4 cut(s)	8, 276, 375, 558
SchI	GAGTC	3 cut(s)	250, 317, 599
ScrFI	CCNGG	2 cut(s)	360, 642
SduI	GDGCHC	2 cut(s)	357, 639
SetI	ASST	8 cut(s)	106, 116, 133, 264, 415, 471, 546, 633
SfaNI	GCATC	2 cut(s)	206, 231
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	1 cut(s)	346
SspMI	CTAG	3 cut(s)	350, 531, 632
StyD4I	CCNGG	2 cut(s)	358, 640
StyI	CCWWGG	2 cut(s)	349, 631
TaaI	ACNGT	8 cut(s)	146, 167, 209, 258, 295, 428, 449, 540
TaqI	TCGA	1 cut(s)	109
TasI	AATT	1 cut(s)	44
TfiI	GAWTC	4 cut(s)	284, 523, 553, 566
Tru1I	TTAA	4 cut(s)	119, 386, 477, 667
Tru9I	TTAA	4 cut(s)	119, 386, 477, 667
TscAI	CASTG	4 cut(s)	286, 325, 452, 607
TseFI	GTSAC	4 cut(s)	76, 295, 365, 647
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	4 cut(s)	76, 295, 365, 647
TspDTI	ATGAA	5 cut(s)	321, 414, 501, 536, 603
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	4 cut(s)	286, 325, 452, 607
XapI	RAATTY	1 cut(s)	44
XmaJI	CCTAGG	2 cut(s)	349, 631
XspI	CTAG	3 cut(s)	350, 531, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.