Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007727.1

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Reverse (-)

34564 .. 36524

Gene Structure 1961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007727.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggatactggagaacttcaatgtctcgcgtatagtgtgactacgcacaccattctccgtcatagacaattattcctagagatgttgcctacatattcctatgtgactatgatgactgggccatcaagtttagttcaaggacatggaatggcccaatttcttttccccaatggcaccttgatcacaatcgtagaagctctctacactcctagggaaaatcaaatcctattgacctttaaagatattcgagccaacggattccatgcagaaatgcatactgagaacggaaaaaggaacgacagaaattgtcgtggcctgtccctactatgtctcatctcaatccccgttgaagtgatgagatcacacggaggtaggcatggccccaacgctatagattacggcactctggcatcacaggccatggcctcagctaggatgcatgggaggcctgtggagcctattcttgagaatatagagatctctgaaaattacactagtatacatgagacatgggatagaaactccaatatcattgatgatgtattcgctcaattcattgggcatgagattgttgggtccgatgatatcaaaccacgctcctttgatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

203

Amino Acids

22.85

Weight (kDa)

5.64

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	499
AccII	CGCG	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	432
AgsI	TTSAA	3 cut(s)	20, 137, 350
AhlI	ACTAGT	1 cut(s)	494
AluBI	AGCT	2 cut(s)	197, 431
AluI	AGCT	2 cut(s)	197, 431
Alw26I	GTCTC	3 cut(s)	29, 335, 500
AoxI	GGCC	7 cut(s)	119, 150, 313, 379, 417, 423, 446
AspA2I	CCTAGG	1 cut(s)	209
AspS9I	GGNCC	4 cut(s)	119, 151, 380, 576
AvaII	GGWCC	1 cut(s)	576
AvrII	CCTAGG	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	427
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	1 cut(s)	415
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	3 cut(s)	29, 335, 500
BcuI	ACTAGT	1 cut(s)	494
BfaI	CTAG	4 cut(s)	77, 210, 432, 495
BfmI	CTRYAG	1 cut(s)	390
BglII	AGATCT	1 cut(s)	477
BlnI	CCTAGG	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	576
BmgT120I	GGNCC	4 cut(s)	119, 151, 380, 576
BmiI	GGNNCC	4 cut(s)	175, 382, 456, 577
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	2 cut(s)	419, 426
BmuI	ACTGGG	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	427
BpuEI	CTTGAG	1 cut(s)	485
BsaBI	GATNNNNATC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	209, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
Bse1I	ACTGG	2 cut(s)	13, 121
Bse8I	GATNNNNATC	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	209, 420
BseGI	GGATG	1 cut(s)	441
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseMII	CTCAG	2 cut(s)	270, 441
BseNI	ACTGG	2 cut(s)	13, 121
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	7 cut(s)	121, 152, 315, 381, 419, 425, 448
BshNI	GGYRCC	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmAI	GTCTC	3 cut(s)	29, 335, 500
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	7 cut(s)	121, 152, 315, 381, 419, 425, 448
Bsp143I	GATC	3 cut(s)	180, 359, 477
Bsp19I	CCATGG	1 cut(s)	420
BspANI	GGCC	7 cut(s)	121, 152, 315, 381, 419, 425, 448
BspCNI	CTCAG	2 cut(s)	271, 440
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	4 cut(s)	175, 382, 456, 577
BspT107I	GGYRCC	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	13, 121
BssECI	CCNNGG	2 cut(s)	209, 420
BssMI	GATC	3 cut(s)	180, 359, 477
BssNAI	GTATAC	1 cut(s)	500
BssT1I	CCWWGG	2 cut(s)	209, 420
Bst1107I	GTATAC	1 cut(s)	500
BstDEI	CTNAG	2 cut(s)	279, 427
BstDSI	CCRYGG	1 cut(s)	420
BstENI	CCTNNNNNAGG	1 cut(s)	430
BstF5I	GGATG	1 cut(s)	441
BstFNI	CGCG	1 cut(s)	29
BstKTI	GATC	3 cut(s)	183, 362, 480
BstMAI	GTCTC	3 cut(s)	29, 335, 500
BstMBI	GATC	3 cut(s)	180, 359, 477
BstMWI	GCNNNNNNNGC	3 cut(s)	416, 445, 454
BstSFI	CTRYAG	1 cut(s)	390
BstUI	CGCG	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BstZ17I	GTATAC	1 cut(s)	500
BsuRI	GGCC	7 cut(s)	121, 152, 315, 381, 419, 425, 448
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	441
Cfr13I	GGNCC	4 cut(s)	119, 151, 380, 576
CviAII	CATG	8 cut(s)	143, 263, 377, 421, 440, 503, 510, 563
DdeI	CTNAG	2 cut(s)	279, 427
DpnI	GATC	3 cut(s)	182, 361, 479
DpnII	GATC	3 cut(s)	180, 359, 477
DraI	TTTAAA	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	209, 420
Eco147I	AGGCCT	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	576
EcoNI	CCTNNNNNAGG	1 cut(s)	430
EcoRV	GATATC	1 cut(s)	586
EcoT14I	CCWWGG	2 cut(s)	209, 420
EcoT22I	ATGCAT	2 cut(s)	276, 441
ErhI	CCWWGG	2 cut(s)	209, 420
FaeI	CATG	8 cut(s)	146, 266, 380, 424, 443, 506, 513, 566
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	8 cut(s)	142, 262, 376, 420, 439, 502, 509, 562
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	499
FokI	GGATG	1 cut(s)	448
FspBI	CTAG	4 cut(s)	77, 210, 432, 495
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	7 cut(s)	121, 152, 315, 381, 419, 425, 448
Hin1II	CATG	8 cut(s)	146, 266, 380, 424, 443, 506, 513, 566
HinfI	GANTC	1 cut(s)	258
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	2 cut(s)	484, 580
Hpy188III	TCNNGA	1 cut(s)	464
Hpy8I	GTNNAC	1 cut(s)	500
HpyCH4V	TGCA	3 cut(s)	266, 274, 439
HpyF10VI	GCNNNNNNNGC	3 cut(s)	416, 445, 454
HpyF3I	CTNAG	2 cut(s)	279, 427
Hsp92II	CATG	8 cut(s)	146, 266, 380, 424, 443, 506, 513, 566
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	180, 359, 477
LmnI	GCTCC	2 cut(s)	454, 602
LpnPI	CCDG	5 cut(s)	102, 329, 392, 401, 462
LweI	GCATC	2 cut(s)	419, 426
MaeI	CTAG	4 cut(s)	77, 210, 432, 495
MaeIII	GTNAC	2 cut(s)	37, 103
MalI	GATC	3 cut(s)	182, 361, 479
MboI	GATC	3 cut(s)	180, 359, 477
MflI	RGATCY	1 cut(s)	477
MluCI	AATT	5 cut(s)	68, 155, 304, 487, 551
MnlI	CCTC	3 cut(s)	362, 436, 438
Mph1103I	ATGCAT	2 cut(s)	276, 441
MseI	TTAA	1 cut(s)	237
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	416, 445, 454
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	3 cut(s)	180, 359, 477
NlaIII	CATG	8 cut(s)	146, 266, 380, 424, 443, 506, 513, 566
NlaIV	GGNNCC	4 cut(s)	175, 382, 456, 577
NmuCI	GTSAC	2 cut(s)	37, 103
NsiI	ATGCAT	2 cut(s)	276, 441
PceI	AGGCCT	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	258
PspN4I	GGNNCC	4 cut(s)	175, 382, 456, 577
PspPI	GGNCC	4 cut(s)	119, 151, 380, 576
PsuI	RGATCY	1 cut(s)	477
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	3 cut(s)	180, 359, 477
Sau96I	GGNCC	4 cut(s)	119, 151, 380, 576
SetI	ASST	5 cut(s)	179, 199, 236, 373, 433
SfaNI	GCATC	2 cut(s)	419, 426
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SpeI	ACTAGT	1 cut(s)	494
Sse9I	AATT	5 cut(s)	68, 155, 304, 487, 551
SseBI	AGGCCT	1 cut(s)	448
SspMI	CTAG	4 cut(s)	77, 210, 432, 495
StuI	AGGCCT	1 cut(s)	448
StyI	CCWWGG	2 cut(s)	209, 420
TaqI	TCGA	1 cut(s)	247
TasI	AATT	5 cut(s)	68, 155, 304, 487, 551
TfiI	GAWTC	1 cut(s)	258
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseFI	GTSAC	2 cut(s)	37, 103
Tsp45I	GTSAC	2 cut(s)	37, 103
TspDTI	ATGAA	1 cut(s)	544
TspGWI	ACGGA	4 cut(s)	47, 270, 300, 381
VpaK11BI	GGWCC	1 cut(s)	576
XagI	CCTNNNNNAGG	1 cut(s)	430
XmaJI	CCTAGG	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	499
XspI	CTAG	4 cut(s)	77, 210, 432, 495
Zsp2I	ATGCAT	2 cut(s)	276, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.