Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000141.1

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Reverse (-)

70150 .. 70821

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000141.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ctgcctactgctgtcatactccaccagaagctaaaacctgaccccagatcaccggagcagaaaaatcgccaccagaatcagccgcctgatgtgtctacaccaatgaaccgccgcctgcatcctcaaccctgctcaaaagcccagaagcaggcccagtcaacgcaaccctctgacgtcagcgcccagtcagcattcagtcagtggcctacgtcagtgtcagagtaccacgtcaagacctccggtcaacgaccagtcaatgccggtcaacctttttccggcgacttccggcgaccaatttttcgatcaagatttccggcaatttttcaaggaatggatgaacttcaatatcttgaggatagtgctactacgcataccattctactacataggcaattattcttggagatgttgcctacagattcatttgtgactacgatggctgggccatcaggtttagttcaaggacatggaatggtccaattcctattgccaaatggcaccttgattaaagtcattgaagctctctatgcttctaaggcaaatagaaccttattaagctttaaagatataagagccaacggattccatgcggaaacgcatagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

201

Amino Acids

22.47

Weight (kDa)

9.72

Isoelectric Point (pI)

51.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	497
AccI	GTMKAC	1 cut(s)	95
AciI	CCGC	4 cut(s)	83, 109, 112, 590
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	148, 275
AgsI	TTSAA	4 cut(s)	326, 344, 461, 518
AhdI	GACNNNNNGTC	1 cut(s)	240
AjiI	CACGTC	1 cut(s)	229
AluBI	AGCT	3 cut(s)	31, 521, 558
AluI	AGCT	3 cut(s)	31, 521, 558
AoxI	GGCC	3 cut(s)	150, 203, 443
ArsI	GACNNNNNNTTYG	2 cut(s)	282, 314
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	3 cut(s)	151, 443, 475
AsuHPI	GGTGA	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	475
BanI	GGYRCC	1 cut(s)	497
BccI	CCATC	2 cut(s)	430, 454
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BfmI	CTRYAG	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	183
BisI	GCNGC	2 cut(s)	83, 112
BlsI	GCNGC	2 cut(s)	84, 113
Bme18I	GGWCC	1 cut(s)	475
BmeRI	GACNNNNNGTC	1 cut(s)	240
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	3 cut(s)	151, 443, 475
BmiI	GGNNCC	1 cut(s)	499
BmrI	ACTGGG	2 cut(s)	148, 178
BmsI	GCATC	1 cut(s)	127
BmuI	ACTGGG	2 cut(s)	148, 178
BpuEI	CTTGAG	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	174
BsaWI	WCCGGW	2 cut(s)	52, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 275
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	3 cut(s)	154, 184, 251
BseGI	GGATG	2 cut(s)	118, 340
BseLI	CCNNNNNNNGG	2 cut(s)	148, 275
BseNI	ACTGG	3 cut(s)	154, 184, 251
BseYI	CCCAGC	1 cut(s)	440
BshFI	GGCC	3 cut(s)	152, 205, 445
BshNI	GGYRCC	1 cut(s)	497
BsiSI	CCGG	6 cut(s)	53, 240, 261, 276, 286, 314
BslI	CCNNNNNNNGG	2 cut(s)	148, 275
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	3 cut(s)	152, 205, 445
Bsp143I	GATC	2 cut(s)	47, 302
BspACI	CCGC	4 cut(s)	83, 109, 112, 590
BspANI	GGCC	3 cut(s)	152, 205, 445
BspLI	GGNNCC	1 cut(s)	499
BspT107I	GGYRCC	1 cut(s)	497
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	3 cut(s)	154, 184, 251
BssAI	RCCGGY	1 cut(s)	260
BssMI	GATC	2 cut(s)	47, 302
BssNI	GRCGYC	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	116, 150
BstDEI	CTNAG	1 cut(s)	534
BstF5I	GGATG	2 cut(s)	118, 340
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	2 cut(s)	50, 305
BstMBI	GATC	2 cut(s)	47, 302
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 527, 536
BstSFI	CTRYAG	1 cut(s)	414
BsuRI	GGCC	3 cut(s)	152, 205, 445
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	118, 340
BtsIMutI	CAGTG	2 cut(s)	206, 219
Cac8I	GCNNGC	2 cut(s)	116, 150
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	3 cut(s)	151, 443, 475
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	2 cut(s)	467, 587
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	534
DpnI	GATC	2 cut(s)	49, 304
DpnII	GATC	2 cut(s)	47, 302
DraI	TTTAAA	1 cut(s)	562
DriI	GACNNNNNGTC	1 cut(s)	240
Eam1105I	GACNNNNNGTC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	475
FaeI	CATG	2 cut(s)	470, 590
FaiI	YATR	8 cut(s)	17, 372, 387, 468, 528, 569, 588, 600
FatI	CATG	2 cut(s)	466, 586
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	2 cut(s)	83, 112
FokI	GGATG	2 cut(s)	105, 347
Fsp4HI	GCNGC	2 cut(s)	83, 112
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	2 cut(s)	83, 112
GsaI	CCCAGC	1 cut(s)	444
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	3 cut(s)	152, 205, 445
HapII	CCGG	6 cut(s)	53, 240, 261, 276, 286, 314
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	470, 590
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	3 cut(s)	159, 245, 266
HindII	GTYRAC	3 cut(s)	159, 245, 266
HindIII	AAGCTT	1 cut(s)	556
HinfI	GANTC	3 cut(s)	76, 419, 582
HpaII	CCGG	6 cut(s)	53, 240, 261, 276, 286, 314
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	4 cut(s)	96, 159, 245, 266
Hpy188I	TCNGA	2 cut(s)	172, 220
Hpy188III	TCNNGA	3 cut(s)	232, 306, 350
Hpy8I	GTNNAC	4 cut(s)	96, 159, 245, 266
HpyCH4IV	ACGT	3 cut(s)	174, 209, 228
HpyCH4V	TGCA	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 527, 536
HpyF3I	CTNAG	1 cut(s)	534
HpySE526I	ACGT	3 cut(s)	174, 209, 228
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	470, 590
HspAI	GCGC	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	47, 302
LmnI	GCTCC	1 cut(s)	55
LweI	GCATC	1 cut(s)	127
MaeII	ACGT	3 cut(s)	174, 209, 228
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	2 cut(s)	49, 304
MboI	GATC	2 cut(s)	47, 302
MluCI	AATT	4 cut(s)	294, 318, 392, 479
MnlI	CCTC	4 cut(s)	132, 178, 247, 346
MseI	TTAA	3 cut(s)	507, 554, 561
MspI	CCGG	6 cut(s)	53, 240, 261, 276, 286, 314
Mva1269I	GAATGC	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	188, 527, 536
NdeII	GATC	2 cut(s)	47, 302
NlaIII	CATG	2 cut(s)	470, 590
NlaIV	GGNNCC	1 cut(s)	499
NmuCI	GTSAC	1 cut(s)	427
PctI	GAATGC	1 cut(s)	191
PfeI	GAWTC	3 cut(s)	76, 419, 582
PkrI	GCNGC	2 cut(s)	84, 113
PspFI	CCCAGC	1 cut(s)	440
PspN4I	GGNNCC	1 cut(s)	499
PspPI	GGNCC	3 cut(s)	151, 443, 475
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	507, 554, 561
SatI	GCNGC	2 cut(s)	83, 112
Sau3AI	GATC	2 cut(s)	47, 302
Sau96I	GGNCC	3 cut(s)	151, 443, 475
SfaNI	GCATC	1 cut(s)	127
SfcI	CTRYAG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	4 cut(s)	294, 318, 392, 479
SsiI	CCGC	4 cut(s)	83, 109, 112, 590
TaiI	ACGT	3 cut(s)	177, 212, 231
TaqI	TCGA	1 cut(s)	301
TasI	AATT	4 cut(s)	294, 318, 392, 479
TauI	GCSGC	2 cut(s)	85, 114
TfiI	GAWTC	3 cut(s)	76, 419, 582
Tru1I	TTAA	3 cut(s)	507, 554, 561
Tru9I	TTAA	3 cut(s)	507, 554, 561
TscAI	CASTG	2 cut(s)	206, 219
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	3 cut(s)	119, 351, 411
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	2 cut(s)	206, 219
VpaK11BI	GGWCC	1 cut(s)	475
XmiI	GTMKAC	1 cut(s)	95
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.