Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000982.1

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Forward (+)

227277 .. 227952

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000982.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgaagcaagatgccgccataaaaggcgccaaccatgggcataacgccatggttgttcctccttcatctggtgctgcagccgtcttggggtgccatagagacgcccaagtcctatgtgacaacgccataaatggcgctacccatggtcaagacgccatggatgccactttccatggttccaacgccatgatgggtgatgtagtcacacattttgcttctaagagcgctacggatgctttggcccaaccaaaatcctcattggttgcttctatggcctctcgctcattttacagagcctgttccttagggaaattaggactgagaccatcctatgcaaaagatatgacaatactcattctgttcttacaaagaatccgtagggatttcgtggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

131

Amino Acids

13.85

Weight (kDa)

8.93

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AccB1I	GGYRCC	2 cut(s)	26, 90
AciI	CCGC	1 cut(s)	15
AcyI	GRCGYC	3 cut(s)	27, 102, 153
AfeI	AGCGCT	1 cut(s)	226
AfiI	CCNNNNNNNGG	3 cut(s)	36, 68, 87
Alw26I	GTCTC	2 cut(s)	93, 316
AlwNI	CAGNNNCTG	1 cut(s)	297
Aor51HI	AGCGCT	1 cut(s)	226
AoxI	GGCC	2 cut(s)	240, 273
ApeKI	GCWGC	2 cut(s)	74, 77
AspLEI	GCGC	3 cut(s)	29, 137, 227
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	206
AxyI	CCTNAGG	1 cut(s)	304
BanI	GGYRCC	2 cut(s)	26, 90
BbvI	GCAGC	2 cut(s)	61, 89
BccI	CCATC	2 cut(s)	184, 334
BceAI	ACGGC	1 cut(s)	65
BcoDI	GTCTC	2 cut(s)	93, 316
BfmI	CTRYAG	1 cut(s)	75
BfoI	RGCGCY	3 cut(s)	30, 138, 228
BisI	GCNGC	3 cut(s)	15, 75, 78
BlsI	GCNGC	3 cut(s)	16, 76, 79
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	3 cut(s)	28, 92, 178
BmsI	GCATC	2 cut(s)	151, 223
BsaHI	GRCGYC	3 cut(s)	27, 102, 153
BsaI	GGTCTC	1 cut(s)	316
BsaJI	CCNNGG	5 cut(s)	34, 48, 142, 156, 172
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 68, 87
Bse21I	CCTNAGG	1 cut(s)	304
BseDI	CCNNGG	5 cut(s)	34, 48, 142, 156, 172
BseGI	GGATG	3 cut(s)	166, 238, 326
BseLI	CCNNNNNNNGG	3 cut(s)	36, 68, 87
BseMII	CTCAG	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	61, 89
BshFI	GGCC	2 cut(s)	242, 275
BshNI	GGYRCC	2 cut(s)	26, 90
BslI	CCNNNNNNNGG	3 cut(s)	36, 68, 87
BsmAI	GTCTC	2 cut(s)	93, 316
BsmBI	CGTCTC	1 cut(s)	93
BsnI	GGCC	2 cut(s)	242, 275
Bso31I	GGTCTC	1 cut(s)	316
Bsp19I	CCATGG	5 cut(s)	34, 48, 142, 156, 172
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	2 cut(s)	242, 275
BspCNI	CTCAG	1 cut(s)	312
BspLI	GGNNCC	3 cut(s)	28, 92, 178
BspMAI	CTGCAG	1 cut(s)	79
BspT107I	GGYRCC	2 cut(s)	26, 90
BspTNI	GGTCTC	1 cut(s)	316
BssECI	CCNNGG	5 cut(s)	34, 48, 142, 156, 172
BssNI	GRCGYC	3 cut(s)	27, 102, 153
BssT1I	CCWWGG	5 cut(s)	34, 48, 142, 156, 172
BstACI	GRCGYC	3 cut(s)	27, 102, 153
BstDEI	CTNAG	3 cut(s)	219, 304, 320
BstDSI	CCRYGG	5 cut(s)	34, 48, 142, 156, 172
BstF5I	GGATG	3 cut(s)	166, 238, 326
BstH2I	RGCGCY	3 cut(s)	30, 138, 228
BstHHI	GCGC	3 cut(s)	29, 137, 227
BstMAI	GTCTC	2 cut(s)	93, 316
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 233, 272
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	61, 89
Bsu36I	CCTNAGG	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	242, 275
BtgI	CCRYGG	5 cut(s)	34, 48, 142, 156, 172
BtsCI	GGATG	3 cut(s)	166, 238, 326
CaiI	CAGNNNCTG	1 cut(s)	297
CfoI	GCGC	3 cut(s)	29, 137, 227
Cfr13I	GGNCC	1 cut(s)	241
CseI	GACGC	2 cut(s)	110, 161
CviAII	CATG	6 cut(s)	35, 49, 143, 157, 173, 187
CviJI	RGCY	4 cut(s)	80, 242, 275, 296
CviKI_1	RGCY	4 cut(s)	80, 242, 275, 296
DdeI	CTNAG	3 cut(s)	219, 304, 320
DinI	GGCGCC	1 cut(s)	28
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eco130I	CCWWGG	5 cut(s)	34, 48, 142, 156, 172
Eco31I	GGTCTC	1 cut(s)	316
Eco47III	AGCGCT	1 cut(s)	226
Eco81I	CCTNAGG	1 cut(s)	304
EcoT14I	CCWWGG	5 cut(s)	34, 48, 142, 156, 172
EgeI	GGCGCC	1 cut(s)	28
EheI	GGCGCC	1 cut(s)	28
ErhI	CCWWGG	5 cut(s)	34, 48, 142, 156, 172
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	6 cut(s)	38, 52, 146, 160, 176, 190
FatI	CATG	6 cut(s)	34, 48, 142, 156, 172, 186
Fnu4HI	GCNGC	3 cut(s)	15, 75, 78
FokI	GGATG	3 cut(s)	173, 245, 313
Fsp4HI	GCNGC	3 cut(s)	15, 75, 78
GlaI	GCGC	3 cut(s)	28, 136, 226
GluI	GCNGC	3 cut(s)	15, 75, 78
HaeII	RGCGCY	3 cut(s)	30, 138, 228
HaeIII	GGCC	2 cut(s)	242, 275
HgaI	GACGC	2 cut(s)	110, 161
HhaI	GCGC	3 cut(s)	29, 137, 227
Hin1I	GRCGYC	3 cut(s)	27, 102, 153
Hin1II	CATG	6 cut(s)	38, 52, 146, 160, 176, 190
Hin6I	GCGC	3 cut(s)	27, 135, 225
HinP1I	GCGC	3 cut(s)	27, 135, 225
HinfI	GANTC	1 cut(s)	372
HphI	GGTGA	1 cut(s)	206
Hpy188III	TCNNGA	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	72
HpyCH4V	TGCA	2 cut(s)	77, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 233, 272
HpyF3I	CTNAG	3 cut(s)	219, 304, 320
Hsp92I	GRCGYC	3 cut(s)	27, 102, 153
Hsp92II	CATG	6 cut(s)	38, 52, 146, 160, 176, 190
HspAI	GCGC	3 cut(s)	27, 135, 225
KasI	GGCGCC	1 cut(s)	26
LpnPI	CCDG	2 cut(s)	54, 310
Lsp1109I	GCAGC	2 cut(s)	61, 89
LweI	GCATC	2 cut(s)	151, 223
MaeIII	GTNAC	2 cut(s)	116, 202
MluCI	AATT	1 cut(s)	311
Mly113I	GGCGCC	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	3 cut(s)	69, 265, 286
MwoI	GCNNNNNNNGC	3 cut(s)	161, 233, 272
NarI	GGCGCC	1 cut(s)	27
NcoI	CCATGG	5 cut(s)	34, 48, 142, 156, 172
NlaIII	CATG	6 cut(s)	38, 52, 146, 160, 176, 190
NlaIV	GGNNCC	3 cut(s)	28, 92, 178
NmuCI	GTSAC	2 cut(s)	116, 202
PfeI	GAWTC	1 cut(s)	372
PkrI	GCNGC	3 cut(s)	16, 76, 79
PluTI	GGCGCC	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	28, 92, 178
PspPI	GGNCC	1 cut(s)	241
PstI	CTGCAG	1 cut(s)	79
PstNI	CAGNNNCTG	1 cut(s)	297
SatI	GCNGC	3 cut(s)	15, 75, 78
Sau96I	GGNCC	1 cut(s)	241
SfaNI	GCATC	2 cut(s)	151, 223
SfcI	CTRYAG	1 cut(s)	75
SfoI	GGCGCC	1 cut(s)	28
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	1 cut(s)	15
SspDI	GGCGCC	1 cut(s)	26
StyI	CCWWGG	5 cut(s)	34, 48, 142, 156, 172
TasI	AATT	1 cut(s)	311
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	372
TseFI	GTSAC	2 cut(s)	116, 202
TseI	GCWGC	2 cut(s)	74, 77
Tsp45I	GTSAC	2 cut(s)	116, 202
TspDTI	ATGAA	2 cut(s)	17, 54
TspGWI	ACGGA	2 cut(s)	245, 365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.