Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004928.1

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Reverse (-)

75179 .. 75748

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004928.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgattggattatcacaagtaataaaagggcgaggaactgccaaatttttgctgcctaatgacacaacatttaaagtcacagatgctctatatgcaccaagagctaatcgaaccttgttaagtttcaaagatattcgtgccaacggttatcatgtagaaacacactgtgagaatggaactgaatacctttatattacctctaatgaatgtggaaggaaacacattttagagaaacttatgagtcaatctagtggactgtacctcactacgattcgaatcattgaatcatatgttgtcaccaataatgaaacatgggacactgactcatacaggctttggcatgaccgcctagggcaccctggtcgtgacatgatgatccgtattttgaagaactcacacggacatcctttatttcgagtgaaaaataaaatgggagaaaaatccgccacactgaaaggtgtcggtcctcgtattgttcaaatgcagccattaccttctgaagtaccagaagcactacctccctcccattatgcctcattgactattccaaaggcacataacttgttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

189

Amino Acids

21.43

Weight (kDa)

9.46

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	354
AciI	CCGC	2 cut(s)	346, 444
AclWI	GGATC	1 cut(s)	370
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	519
AdeI	CACNNNGTG	1 cut(s)	167
AfaI	GTAC	2 cut(s)	260, 504
AgsI	TTSAA	4 cut(s)	127, 284, 388, 479
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
AlwI	GGATC	1 cut(s)	370
ApeKI	GCWGC	2 cut(s)	52, 484
ApoI	RAATTY	1 cut(s)	44
AspA2I	CCTAGG	1 cut(s)	349
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	1 cut(s)	289
AsuII	TTCGAA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	464
AvrII	CCTAGG	1 cut(s)	349
BaeGI	GKGCMC	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	39, 496
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	1 cut(s)	360
BfaI	CTAG	2 cut(s)	249, 350
BisI	GCNGC	2 cut(s)	53, 485
BlnI	CCTAGG	1 cut(s)	349
BlsI	GCNGC	2 cut(s)	54, 486
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	1 cut(s)	73
Bpu14I	TTCGAA	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	275
BsaJI	CCNNGG	2 cut(s)	349, 358
Bse8I	GATNNNNATC	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	349, 358
BseGI	GGATG	1 cut(s)	403
BseJI	GATNNNNATC	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	357
BseXI	GCAGC	2 cut(s)	39, 496
BshNI	GGYRCC	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	375
BspACI	CCGC	2 cut(s)	346, 444
BspLI	GGNNCC	1 cut(s)	356
BspPI	GGATC	1 cut(s)	370
BspT104I	TTCGAA	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	354
BssECI	CCNNGG	2 cut(s)	349, 358
BssMI	GATC	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	3 cut(s)	146, 167, 258
BstBI	TTCGAA	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	1 cut(s)	378
BstMBI	GATC	1 cut(s)	375
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 101
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	39, 496
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	3 cut(s)	163, 318, 449
Cfr13I	GGNCC	1 cut(s)	464
Csp6I	GTAC	2 cut(s)	259, 503
CviAII	CATG	4 cut(s)	152, 312, 341, 370
CviJI	RGCY	3 cut(s)	104, 334, 487
CviKI_1	RGCY	3 cut(s)	104, 334, 487
CviQI	GTAC	2 cut(s)	259, 503
DpnI	GATC	1 cut(s)	377
DpnII	GATC	1 cut(s)	375
DraI	TTTAAA	1 cut(s)	73
DraIII	CACNNNGTG	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	4 cut(s)	155, 315, 344, 373
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	4 cut(s)	151, 311, 340, 369
FauNDI	CATATG	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	53, 485
FokI	GGATG	1 cut(s)	390
Fsp4HI	GCNGC	2 cut(s)	53, 485
FspBI	CTAG	2 cut(s)	249, 350
GluI	GCNGC	2 cut(s)	53, 485
Hin1II	CATG	4 cut(s)	155, 315, 344, 373
HinfI	GANTC	5 cut(s)	241, 271, 276, 284, 323
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	207, 504
HpyCH4III	ACNGT	3 cut(s)	146, 167, 258
HpyCH4V	TGCA	2 cut(s)	95, 484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 101
Hsp92II	CATG	4 cut(s)	155, 315, 344, 373
Kzo9I	GATC	1 cut(s)	375
LpnPI	CCDG	4 cut(s)	316, 345, 372, 519
Lsp1109I	GCAGC	2 cut(s)	39, 496
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	2 cut(s)	249, 350
MaeIII	GTNAC	3 cut(s)	76, 295, 365
MalI	GATC	1 cut(s)	377
MboI	GATC	1 cut(s)	375
MboII	GAAGA	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	1 cut(s)	44
MlyI	GAGTC	2 cut(s)	250, 317
MnlI	CCTC	7 cut(s)	26, 208, 272, 477, 528, 532, 544
MseI	TTAA	2 cut(s)	72, 119
MspR9I	CCNGG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	92, 101
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	1 cut(s)	375
NlaIII	CATG	4 cut(s)	155, 315, 344, 373
NlaIV	GGNNCC	1 cut(s)	356
NmuCI	GTSAC	3 cut(s)	76, 295, 365
NspV	TTCGAA	1 cut(s)	274
PfeI	GAWTC	3 cut(s)	271, 276, 284
PkrI	GCNGC	2 cut(s)	54, 486
PleI	GAGTC	2 cut(s)	249, 317
PpsI	GAGTC	2 cut(s)	249, 317
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	356
PspPI	GGNCC	1 cut(s)	464
RsaI	GTAC	2 cut(s)	260, 504
RsaNI	GTAC	2 cut(s)	259, 503
SaqAI	TTAA	2 cut(s)	72, 119
SatI	GCNGC	2 cut(s)	53, 485
Sau3AI	GATC	1 cut(s)	375
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	2 cut(s)	250, 317
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	8 cut(s)	106, 116, 189, 200, 264, 460, 496, 520
SfaNI	GCATC	1 cut(s)	73
SfuI	TTCGAA	1 cut(s)	274
SinI	GGWCC	1 cut(s)	464
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	2 cut(s)	346, 444
SspMI	CTAG	2 cut(s)	249, 350
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	3 cut(s)	146, 167, 258
TaqI	TCGA	3 cut(s)	109, 274, 415
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	271, 276, 284
Tru1I	TTAA	2 cut(s)	72, 119
Tru9I	TTAA	2 cut(s)	72, 119
TscAI	CASTG	3 cut(s)	170, 325, 456
TseFI	GTSAC	3 cut(s)	76, 295, 365
TseI	GCWGC	2 cut(s)	52, 484
Tsp45I	GTSAC	3 cut(s)	76, 295, 365
TspDTI	ATGAA	2 cut(s)	219, 321
TspGWI	ACGGA	2 cut(s)	368, 414
TspRI	CASTG	3 cut(s)	170, 325, 456
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	1 cut(s)	44
XmaJI	CCTAGG	1 cut(s)	349
XspI	CTAG	2 cut(s)	249, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.