Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003044.1

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Reverse (-)

78693 .. 83265

Gene Structure 4573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003044.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

atggctgatccaactcaacctgaatttgacattttggactcagaaggacttgagtaccatcattggatttctgatgtagaaaccacctttgtggcaaaagactacgctgccaccatcaccgaccccaaagacgatttaaagacactcaaagaactgttggatgagctcaagggactttttgggaacattcatgacactttgctcccagaactgttcgttcattggaatgaaatccgcttgcttgactacaaaagggtcaatgacttcaacaaggacatgttgcgcctaaaagtacgtctcaattactatggaatggaacttacagaagatgatatgatccagaagactctttccacttttcctacttcagcacttatactagtgaaccagtataggctggtgaagcgtcatttagggggggtgcaagagttgactttttattcgttgggattctctgaaaacttccttcacgaaagtcgtagagcgcatcgatacgagttcgtggacatgtggaactcgtcaatcggagttccggcaattctcgtcggtgatggcacgcagaaaggcagcgcagtttggtgttttcagaccttacaggaaaacgtagctccggcaacggcacggcttcaagtttccttctttggcttcgtgagggccttcgggatctatctatggttgcagatggtgaccttgatgtttgattttatcaccagatggggtttgaaatcatatgtcacagatggtgacaggtcgcagacggtcagggtaatcgtggctgaagctgaggtagcttgttggcagccgctgtgtagtggaaagaaccccaatgcaaaaggggttggacgtgttgatccttgcccacgtggaaacaatttaccatgtggaaagggacatgggggtcgtgatatggaccgtggaggccttcctaatgtatggcgcatagatagtggtgctggccctagtggtcatggaaacaaggtggaaaaggaacctaagaaccattcagtcaaaaaggaaagagttgacaaggaaccatgctatagtttcaaagatattcgtgccaacggttatcatgtagaaacccactatgagaatgaaatcgaatacctttatattacctctaatgaatgtggaaggaaacgcaatttagagaaattaatgagtcaatctagtggactgtacctcactactattcggatcattgaatcttatgctgtcactaataatgaaatgtgggacactgactcatataggctttggcatgatcgcctagggcaccctggtcgtgacatgatgaatcgtattttaaagaactcacacggacatcccttcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

445

Amino Acids

51.11

Weight (kDa)

6.26

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	897
AccB1I	GGYRCC	1 cut(s)	1275
AciI	CCGC	2 cut(s)	235, 803
AclWI	GGATC	5 cut(s)	2, 331, 671, 845, 1205
AcsI	RAATTY	1 cut(s)	23
AcuI	CTGAAG	2 cut(s)	351, 798
AcvI	CACGTG	1 cut(s)	863
AfaI	GTAC	3 cut(s)	56, 294, 1181
AflIII	ACRYGT	3 cut(s)	276, 507, 844
AgsI	TTSAA	5 cut(s)	268, 629, 724, 1048, 1205
AhlI	ACTAGT	1 cut(s)	379
AjiI	CACGTC	1 cut(s)	845
AjnI	CCWGG	1 cut(s)	1279
AleI	CACNNNNGTG	1 cut(s)	89
AluBI	AGCT	4 cut(s)	166, 608, 782, 791
AluI	AGCT	4 cut(s)	166, 608, 782, 791
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	5 cut(s)	2, 331, 671, 845, 1205
AlwNI	CAGNNNCTG	1 cut(s)	805
AoxI	GGCC	3 cut(s)	654, 919, 955
ApeKI	GCWGC	3 cut(s)	107, 567, 799
ApoI	RAATTY	1 cut(s)	23
ArsI	GACNNNNNNTTYG	2 cut(s)	424, 456
AseI	ATTAAT	1 cut(s)	1157
AspA2I	CCTAGG	1 cut(s)	1270
AspLEI	GCGC	4 cut(s)	285, 487, 572, 939
AspS9I	GGNCC	3 cut(s)	654, 910, 956
AsuHPI	GGTGA	6 cut(s)	109, 412, 560, 697, 700, 755
AvaII	GGWCC	1 cut(s)	910
AvrII	CCTAGG	1 cut(s)	1270
BaeGI	GKGCMC	1 cut(s)	1278
BaeI	ACNNNNGTAYC	2 cut(s)	38, 71
BanI	GGYRCC	1 cut(s)	1275
BanII	GRGCYC	1 cut(s)	168
BbrPI	CACGTG	1 cut(s)	863
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	168
BbvCI	CCTCAGC	1 cut(s)	783
BbvI	GCAGC	3 cut(s)	94, 579, 811
BccI	CCATC	6 cut(s)	66, 122, 545, 676, 708, 734
BceAI	ACGGC	2 cut(s)	633, 638
BcgI	CGANNNNNNTGC	2 cut(s)	1265, 1299
BciT130I	CCWGG	1 cut(s)	1281
BcoDI	GTCTC	1 cut(s)	302
BcuI	ACTAGT	1 cut(s)	379
BfaI	CTAG	4 cut(s)	380, 960, 1170, 1271
BfmI	CTRYAG	1 cut(s)	1039
BisI	GCNGC	4 cut(s)	108, 568, 800, 803
BlnI	CCTAGG	1 cut(s)	1270
BlsI	GCNGC	4 cut(s)	109, 569, 801, 804
Bme1390I	CCNGG	1 cut(s)	1281
Bme18I	GGWCC	1 cut(s)	910
BmgBI	CACGTC	1 cut(s)	845
BmgT120I	GGNCC	3 cut(s)	654, 910, 956
BmiI	GGNNCC	3 cut(s)	990, 1032, 1277
BmrFI	CCNGG	1 cut(s)	1281
BmsI	GCATC	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	350
Bpu10I	CCTNAGC	1 cut(s)	783
BpuEI	CTTGAG	2 cut(s)	71, 152
Bsa29I	ATCGAT	1 cut(s)	490
BsaAI	YACGTR	1 cut(s)	863
BsaJI	CCNNGG	3 cut(s)	913, 1270, 1279
Bse1I	ACTGG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	1281
BseCI	ATCGAT	1 cut(s)	490
BseDI	CCNNGG	3 cut(s)	913, 1270, 1279
BseGI	GGATG	2 cut(s)	166, 1324
BseMII	CTCAG	2 cut(s)	54, 774
BseNI	ACTGG	1 cut(s)	388
BseSI	GKGCMC	1 cut(s)	1278
BseXI	GCAGC	3 cut(s)	94, 579, 811
BshFI	GGCC	3 cut(s)	656, 921, 957
BshNI	GGYRCC	1 cut(s)	1275
BshVI	ATCGAT	1 cut(s)	490
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	533, 611
BslFI	GGGAC	3 cut(s)	186, 903, 1250
BsmAI	GTCTC	1 cut(s)	302
BsmBI	CGTCTC	1 cut(s)	302
BsmFI	GGGAC	3 cut(s)	186, 903, 1250
BsnI	GGCC	3 cut(s)	656, 921, 957
Bsp1286I	GDGCHC	2 cut(s)	168, 1278
Bsp143I	GATC	6 cut(s)	7, 336, 663, 850, 1197, 1264
BspACI	CCGC	2 cut(s)	235, 803
BspANI	GGCC	3 cut(s)	656, 921, 957
BspCNI	CTCAG	2 cut(s)	53, 775
BspDI	ATCGAT	1 cut(s)	490
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	3 cut(s)	990, 1032, 1277
BspPI	GGATC	5 cut(s)	2, 331, 671, 845, 1205
BspT107I	GGYRCC	1 cut(s)	1275
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	3 cut(s)	913, 1270, 1279
BssMI	GATC	6 cut(s)	7, 336, 663, 850, 1197, 1264
BssT1I	CCWWGG	1 cut(s)	1270
Bst2UI	CCWGG	1 cut(s)	1281
Bst4CI	ACNGT	6 cut(s)	156, 213, 760, 914, 1067, 1179
BstBAI	YACGTR	1 cut(s)	863
BstC8I	GCNNGC	3 cut(s)	239, 557, 955
BstDEI	CTNAG	3 cut(s)	40, 783, 993
BstDSI	CCRYGG	1 cut(s)	913
BstEII	GGTNACC	1 cut(s)	685
BstF5I	GGATG	2 cut(s)	166, 1324
BstHHI	GCGC	4 cut(s)	285, 487, 572, 939
BstKTI	GATC	6 cut(s)	10, 339, 666, 853, 1200, 1267
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	6 cut(s)	7, 336, 663, 850, 1197, 1264
BstMWI	GCNNNNNNNGC	2 cut(s)	403, 788
BstNI	CCWGG	1 cut(s)	1281
BstNSI	RCATGY	2 cut(s)	280, 511
BstPI	GGTNACC	1 cut(s)	685
BstSCI	CCNGG	1 cut(s)	1279
BstSFI	CTRYAG	1 cut(s)	1039
BstSLI	GKGCMC	1 cut(s)	1278
BstV1I	GCAGC	3 cut(s)	94, 579, 811
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	1 cut(s)	663
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	663
Bsu15I	ATCGAT	1 cut(s)	490
BsuRI	GGCC	3 cut(s)	656, 921, 957
BsuTUI	ATCGAT	1 cut(s)	490
BtgI	CCRYGG	1 cut(s)	913
BtrI	CACGTC	1 cut(s)	845
BtsCI	GGATG	2 cut(s)	166, 1324
BtsIMutI	CAGTG	1 cut(s)	1239
Cac8I	GCNNGC	3 cut(s)	239, 557, 955
CaiI	CAGNNNCTG	1 cut(s)	805
CciI	TCATGA	1 cut(s)	190
CfoI	GCGC	4 cut(s)	285, 487, 572, 939
Cfr13I	GGNCC	3 cut(s)	654, 910, 956
ClaI	ATCGAT	1 cut(s)	490
CseI	GACGC	1 cut(s)	395
Csp6I	GTAC	3 cut(s)	55, 293, 1180
CviQI	GTAC	3 cut(s)	55, 293, 1180
DdeI	CTNAG	3 cut(s)	40, 783, 993
DpnI	GATC	6 cut(s)	9, 338, 665, 852, 1199, 1266
DpnII	GATC	6 cut(s)	7, 336, 663, 850, 1197, 1264
DraI	TTTAAA	2 cut(s)	138, 1308
DrdI	GACNNNNNNGTC	1 cut(s)	897
DseDI	GACNNNNNNGTC	1 cut(s)	897
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	1270
Eco147I	AGGCCT	1 cut(s)	921
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	910
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	2 cut(s)	351, 798
Eco72I	CACGTG	1 cut(s)	863
Eco91I	GGTNACC	1 cut(s)	685
EcoICRI	GAGCTC	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	654
EcoO65I	GGTNACC	1 cut(s)	685
EcoRII	CCWGG	1 cut(s)	1279
EcoT14I	CCWWGG	1 cut(s)	1270
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	1270
Esp3I	CGTCTC	1 cut(s)	302
FaqI	GGGAC	3 cut(s)	186, 903, 1250
FauNDI	CATATG	1 cut(s)	730
Fnu4HI	GCNGC	4 cut(s)	108, 568, 800, 803
FokI	GGATG	2 cut(s)	173, 1311
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	4 cut(s)	108, 568, 800, 803
FspBI	CTAG	4 cut(s)	380, 960, 1170, 1271
GlaI	GCGC	4 cut(s)	284, 486, 571, 938
GluI	GCNGC	4 cut(s)	108, 568, 800, 803
HaeIII	GGCC	3 cut(s)	656, 921, 957
HapII	CCGG	2 cut(s)	533, 611
HgaI	GACGC	1 cut(s)	395
HhaI	GCGC	4 cut(s)	285, 487, 572, 939
Hin6I	GCGC	4 cut(s)	283, 485, 570, 937
HinP1I	GCGC	4 cut(s)	283, 485, 570, 937
HincII	GTYRAC	2 cut(s)	432, 1024
HindII	GTYRAC	2 cut(s)	432, 1024
HinfI	GANTC	7 cut(s)	38, 346, 450, 1162, 1205, 1244, 1297
HpaII	CCGG	2 cut(s)	533, 611
HphI	GGTGA	6 cut(s)	109, 412, 560, 697, 700, 755
Hpy166II	GTNNAC	5 cut(s)	385, 432, 505, 1024, 1175
Hpy188I	TCNGA	6 cut(s)	43, 73, 457, 527, 588, 1197
Hpy188III	TCNNGA	7 cut(s)	191, 340, 470, 649, 661, 902, 1286
Hpy8I	GTNNAC	5 cut(s)	385, 432, 505, 1024, 1175
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	6 cut(s)	38, 476, 646, 667, 932, 1128
HpyCH4III	ACNGT	6 cut(s)	156, 213, 760, 914, 1067, 1179
HpyCH4IV	ACGT	4 cut(s)	295, 603, 844, 862
HpyCH4V	TGCA	3 cut(s)	424, 679, 830
HpyF10VI	GCNNNNNNNGC	2 cut(s)	403, 788
HpyF3I	CTNAG	3 cut(s)	40, 783, 993
HpySE526I	ACGT	4 cut(s)	295, 603, 844, 862
HspAI	GCGC	4 cut(s)	283, 485, 570, 937
Kzo9I	GATC	6 cut(s)	7, 336, 663, 850, 1197, 1264
LmnI	GCTCC	2 cut(s)	207, 613
Lsp1109I	GCAGC	3 cut(s)	94, 579, 811
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	4 cut(s)	380, 960, 1170, 1271
MaeII	ACGT	4 cut(s)	295, 603, 844, 862
MaeIII	GTNAC	5 cut(s)	685, 733, 743, 1216, 1286
MalI	GATC	6 cut(s)	9, 338, 665, 852, 1199, 1266
MboI	GATC	6 cut(s)	7, 336, 663, 850, 1197, 1264
MboII	GAAGA	2 cut(s)	338, 355
MflI	RGATCY	1 cut(s)	663
MhlI	GDGCHC	2 cut(s)	168, 1278
MluCI	AATT	6 cut(s)	23, 301, 537, 871, 1144, 1154
MlyI	GAGTC	4 cut(s)	32, 340, 1171, 1238
MmeI	TCCRAC	3 cut(s)	35, 138, 820
MnlI	CCTC	5 cut(s)	645, 778, 911, 1129, 1193
MseI	TTAA	3 cut(s)	137, 1157, 1307
MslI	CAYNNNNRTG	2 cut(s)	89, 225
MspA1I	CMGCKG	1 cut(s)	805
MspI	CCGG	2 cut(s)	533, 611
MspR9I	CCNGG	1 cut(s)	1281
MvaI	CCWGG	1 cut(s)	1281
MwoI	GCNNNNNNNGC	2 cut(s)	403, 788
NdeI	CATATG	1 cut(s)	730
NdeII	GATC	6 cut(s)	7, 336, 663, 850, 1197, 1264
NlaIV	GGNNCC	3 cut(s)	990, 1032, 1277
NmuCI	GTSAC	5 cut(s)	685, 733, 743, 1216, 1286
NspI	RCATGY	2 cut(s)	280, 511
OliI	CACNNNNGTG	1 cut(s)	89
PagI	TCATGA	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	921
PciI	ACATGT	2 cut(s)	276, 507
PfeI	GAWTC	3 cut(s)	450, 1205, 1297
PkrI	GCNGC	4 cut(s)	109, 569, 801, 804
PleI	GAGTC	4 cut(s)	32, 340, 1170, 1238
PmaCI	CACGTG	1 cut(s)	863
PmlI	CACGTG	1 cut(s)	863
PpsI	GAGTC	4 cut(s)	32, 340, 1170, 1238
Ppu21I	YACGTR	1 cut(s)	863
PscI	ACATGT	2 cut(s)	276, 507
PshBI	ATTAAT	1 cut(s)	1157
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	1279
PspCI	CACGTG	1 cut(s)	863
PspEI	GGTNACC	1 cut(s)	685
PspGI	CCWGG	1 cut(s)	1279
PspN4I	GGNNCC	3 cut(s)	990, 1032, 1277
PspPI	GGNCC	3 cut(s)	654, 910, 956
PstNI	CAGNNNCTG	1 cut(s)	805
PsuI	RGATCY	1 cut(s)	663
RsaI	GTAC	3 cut(s)	56, 294, 1181
RsaNI	GTAC	3 cut(s)	55, 293, 1180
RseI	CAYNNNNRTG	2 cut(s)	89, 225
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	137, 1157, 1307
SatI	GCNGC	4 cut(s)	108, 568, 800, 803
Sau3AI	GATC	6 cut(s)	7, 336, 663, 850, 1197, 1264
Sau96I	GGNCC	3 cut(s)	654, 910, 956
SchI	GAGTC	4 cut(s)	32, 340, 1171, 1238
ScrFI	CCNGG	1 cut(s)	1281
SduI	GDGCHC	2 cut(s)	168, 1278
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	1039
SinI	GGWCC	1 cut(s)	910
SmiMI	CAYNNNNRTG	2 cut(s)	89, 225
SmlI	CTYRAG	2 cut(s)	50, 167
SmoI	CTYRAG	2 cut(s)	50, 167
SpeI	ACTAGT	1 cut(s)	379
Sse9I	AATT	6 cut(s)	23, 301, 537, 871, 1144, 1154
SseBI	AGGCCT	1 cut(s)	921
SsiI	CCGC	2 cut(s)	235, 803
SspMI	CTAG	4 cut(s)	380, 960, 1170, 1271
SstI	GAGCTC	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	921
StyD4I	CCNGG	1 cut(s)	1279
StyI	CCWWGG	1 cut(s)	1270
TaaI	ACNGT	6 cut(s)	156, 213, 760, 914, 1067, 1179
TaiI	ACGT	4 cut(s)	298, 606, 847, 865
TaqI	TCGA	2 cut(s)	490, 1101
TasI	AATT	6 cut(s)	23, 301, 537, 871, 1144, 1154
TauI	GCSGC	1 cut(s)	805
TfiI	GAWTC	3 cut(s)	450, 1205, 1297
Tru1I	TTAA	3 cut(s)	137, 1157, 1307
Tru9I	TTAA	3 cut(s)	137, 1157, 1307
TscAI	CASTG	1 cut(s)	1246
TseFI	GTSAC	5 cut(s)	685, 733, 743, 1216, 1286
TseI	GCWGC	3 cut(s)	107, 567, 799
Tsp45I	GTSAC	5 cut(s)	685, 733, 743, 1216, 1286
TspDTI	ATGAA	7 cut(s)	179, 209, 243, 1110, 1140, 1242, 1310
TspGWI	ACGGA	1 cut(s)	1335
TspRI	CASTG	1 cut(s)	1246
VpaK11BI	GGWCC	1 cut(s)	910
VspI	ATTAAT	1 cut(s)	1157
XapI	RAATTY	1 cut(s)	23
XceI	RCATGY	2 cut(s)	280, 511
XmaJI	CCTAGG	1 cut(s)	1270
XspI	CTAG	4 cut(s)	380, 960, 1170, 1271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.