Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014117.1

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Reverse (-)

858 .. 2477

Gene Structure 1620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014117.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgctagtgaaccagtataggctggagtatgataacaaaagaatcacaactttcaacaagctgatcaacctactgcaagtggctgagaggcataatgaggttcttttgaacaacaatgcaatgcccgttcggacaaaaaaaattcctgaggctaattatggcaaagtcaaaagtggaaagaaccccaatgaaaagagggttggacgtgctgatccctacccacgtggcaagggacgtgggggtcgtggtatgggccgtggaggccctcccaatgtatggcgcatagatggtggtgctggccctagtggtcatggaaacaaggtgcaaagggcacccaagaacccttcagtcaaacctggtagagttggtaatgaaccatgctataggtgtggagtcatggggggcactgtcacagacgctctatatgcaccaagagccaatcgaaccttgttaagtttcaaagatattcgtgccaacggttatcatgtagaaacacactgtgagaatggaactgaatacctttatattgcctctaatgaatgtggaaggaaacgcattttagagaaacttatgagtcaatctagtggactgtacctcactacgattcggatcattgaatcatatgttgtcaccaacaatcaaatatgggacactgactcatacaggctttggcatgaccgcctagggcaccctggtcgtgacatggtgatccgtattttgaagaactcacacggaaatcccttctttcgagtgaaaaataaaatgggagaaaaatctgccacactaaaaggtgtcggtcatcgtattgctcaaatgcagctattacattctgaagtaccagaagcactacctccctcccattatgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

289

Amino Acids

32.43

Weight (kDa)

10.03

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	240
AccB1I	GGYRCC	2 cut(s)	331, 687
AccB7I	CCANNNNNTGG	1 cut(s)	276
AciI	CCGC	1 cut(s)	679
AclWI	GGATC	3 cut(s)	206, 617, 703
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	2 cut(s)	330, 852
AcvI	CACGTG	1 cut(s)	224
AdeI	CACNNNGTG	1 cut(s)	500
AfaI	GTAC	2 cut(s)	593, 837
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	5 cut(s)	55, 109, 460, 617, 721
AjiI	CACGTC	2 cut(s)	206, 236
AjnI	CCWGG	2 cut(s)	355, 691
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AluBI	AGCT	2 cut(s)	61, 820
AluI	AGCT	2 cut(s)	61, 820
AlwI	GGATC	3 cut(s)	206, 617, 703
AoxI	GGCC	3 cut(s)	253, 262, 298
ApeKI	GCWGC	1 cut(s)	817
ApoI	RAATTY	1 cut(s)	141
AspA2I	CCTAGG	1 cut(s)	682
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	3 cut(s)	253, 263, 299
AsuHPI	GGTGA	2 cut(s)	622, 718
AvrII	CCTAGG	1 cut(s)	682
AxyI	CCTNAGG	1 cut(s)	147
BaeGI	GKGCMC	3 cut(s)	334, 407, 690
BanI	GGYRCC	2 cut(s)	331, 687
BbrPI	CACGTG	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	829
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	1 cut(s)	240
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BciT130I	CCWGG	2 cut(s)	357, 693
BclI	TGATCA	1 cut(s)	63
BfaI	CTAG	5 cut(s)	5, 303, 582, 683, 868
BfmI	CTRYAG	1 cut(s)	382
BglI	GCCNNNNNGGC	1 cut(s)	261
BisI	GCNGC	1 cut(s)	818
BlnI	CCTAGG	1 cut(s)	682
BlsI	GCNGC	1 cut(s)	819
Bme1390I	CCNGG	2 cut(s)	357, 693
BmgBI	CACGTC	2 cut(s)	206, 236
BmgT120I	GGNCC	3 cut(s)	253, 263, 299
BmiI	GGNNCC	2 cut(s)	333, 689
BmrFI	CCNGG	2 cut(s)	357, 693
BpmI	CTGGAG	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	608
BsaJI	CCNNGG	3 cut(s)	256, 682, 691
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	13
Bse21I	CCTNAGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	608
BseBI	CCWGG	2 cut(s)	357, 693
BseDI	CCNNGG	3 cut(s)	256, 682, 691
BseJI	GATNNNNATC	1 cut(s)	608
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	2 cut(s)	75, 138
BseNI	ACTGG	1 cut(s)	13
BseSI	GKGCMC	3 cut(s)	334, 407, 690
BseXI	GCAGC	1 cut(s)	829
BshFI	GGCC	3 cut(s)	255, 264, 300
BshNI	GGYRCC	2 cut(s)	331, 687
BslFI	GGGAC	2 cut(s)	246, 662
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmFI	GGGAC	2 cut(s)	246, 662
BsnI	GGCC	3 cut(s)	255, 264, 300
Bsp1286I	GDGCHC	3 cut(s)	334, 407, 690
Bsp143I	GATC	4 cut(s)	63, 211, 609, 708
BspACI	CCGC	1 cut(s)	679
BspANI	GGCC	3 cut(s)	255, 264, 300
BspCNI	CTCAG	2 cut(s)	76, 139
BspLI	GGNNCC	2 cut(s)	333, 689
BspPI	GGATC	3 cut(s)	206, 617, 703
BspT107I	GGYRCC	2 cut(s)	331, 687
BsrDI	GCAATG	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	3 cut(s)	256, 682, 691
BssMI	GATC	4 cut(s)	63, 211, 609, 708
BssT1I	CCWWGG	1 cut(s)	682
Bst2UI	CCWGG	2 cut(s)	357, 693
Bst4CI	ACNGT	4 cut(s)	409, 479, 500, 591
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	2 cut(s)	84, 147
BstDSI	CCRYGG	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	4 cut(s)	66, 214, 612, 711
BstMBI	GATC	4 cut(s)	63, 211, 609, 708
BstMWI	GCNNNNNNNGC	3 cut(s)	261, 425, 434
BstNI	CCWGG	2 cut(s)	357, 693
BstSCI	CCNGG	2 cut(s)	355, 691
BstSFI	CTRYAG	1 cut(s)	382
BstSLI	GKGCMC	3 cut(s)	334, 407, 690
BstV1I	GCAGC	1 cut(s)	829
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	3 cut(s)	255, 264, 300
BtgI	CCRYGG	1 cut(s)	256
BtrI	CACGTC	2 cut(s)	206, 236
BtsIMutI	CAGTG	3 cut(s)	405, 496, 651
Cac8I	GCNNGC	1 cut(s)	298
CfoI	GCGC	1 cut(s)	282
Cfr13I	GGNCC	3 cut(s)	253, 263, 299
CseI	GACGC	1 cut(s)	425
CsiI	ACCWGGT	1 cut(s)	355
Csp6I	GTAC	2 cut(s)	592, 836
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviAII	CATG	6 cut(s)	311, 378, 397, 485, 674, 703
CviQI	GTAC	2 cut(s)	592, 836
DdeI	CTNAG	2 cut(s)	84, 147
DpnI	GATC	4 cut(s)	65, 213, 611, 710
DpnII	GATC	4 cut(s)	63, 211, 609, 708
DraIII	CACNNNGTG	1 cut(s)	500
DrdI	GACNNNNNNGTC	1 cut(s)	240
DseDI	GACNNNNNNGTC	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	682
Eco57I	CTGAAG	2 cut(s)	330, 852
Eco72I	CACGTG	1 cut(s)	224
Eco81I	CCTNAGG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	355, 691
EcoT14I	CCWWGG	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	682
FaeI	CATG	6 cut(s)	314, 381, 400, 488, 677, 706
FaqI	GGGAC	2 cut(s)	246, 662
FatI	CATG	6 cut(s)	310, 377, 396, 484, 673, 702
FauNDI	CATATG	1 cut(s)	622
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	818
Fsp4HI	GCNGC	1 cut(s)	818
FspBI	CTAG	5 cut(s)	5, 303, 582, 683, 868
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	1 cut(s)	818
GsuI	CTGGAG	1 cut(s)	44
HaeIII	GGCC	3 cut(s)	255, 264, 300
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	6 cut(s)	314, 381, 400, 488, 677, 706
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HinfI	GANTC	6 cut(s)	42, 393, 574, 604, 617, 656
HphI	GGTGA	2 cut(s)	622, 718
Hpy166II	GTNNAC	2 cut(s)	10, 587
Hpy188I	TCNGA	3 cut(s)	132, 609, 832
Hpy188III	TCNNGA	2 cut(s)	146, 698
Hpy8I	GTNNAC	2 cut(s)	10, 587
HpyAV	CCTTC	3 cut(s)	354, 540, 751
HpyCH4III	ACNGT	4 cut(s)	409, 479, 500, 591
HpyCH4IV	ACGT	3 cut(s)	205, 223, 235
HpyCH4V	TGCA	5 cut(s)	76, 119, 325, 428, 817
HpyF10VI	GCNNNNNNNGC	3 cut(s)	261, 425, 434
HpyF3I	CTNAG	2 cut(s)	84, 147
HpySE526I	ACGT	3 cut(s)	205, 223, 235
Hsp92II	CATG	6 cut(s)	314, 381, 400, 488, 677, 706
HspAI	GCGC	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	4 cut(s)	63, 211, 609, 708
Lsp1109I	GCAGC	1 cut(s)	829
MabI	ACCWGGT	1 cut(s)	355
MaeI	CTAG	5 cut(s)	5, 303, 582, 683, 868
MaeII	ACGT	3 cut(s)	205, 223, 235
MaeIII	GTNAC	3 cut(s)	409, 628, 698
MalI	GATC	4 cut(s)	65, 213, 611, 710
MboI	GATC	4 cut(s)	63, 211, 609, 708
MboII	GAAGA	1 cut(s)	733
MhlI	GDGCHC	3 cut(s)	334, 407, 690
MluCI	AATT	2 cut(s)	141, 154
MlyI	GAGTC	3 cut(s)	402, 583, 650
MmeI	TCCRAC	1 cut(s)	181
MseI	TTAA	1 cut(s)	452
MspR9I	CCNGG	2 cut(s)	357, 693
MvaI	CCWGG	2 cut(s)	357, 693
MwoI	GCNNNNNNNGC	3 cut(s)	261, 425, 434
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	4 cut(s)	63, 211, 609, 708
NlaIII	CATG	6 cut(s)	314, 381, 400, 488, 677, 706
NlaIV	GGNNCC	2 cut(s)	333, 689
NmuCI	GTSAC	3 cut(s)	409, 628, 698
PcsI	WCGNNNNNNNCGW	1 cut(s)	241
PfeI	GAWTC	3 cut(s)	42, 604, 617
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	819
PleI	GAGTC	3 cut(s)	401, 582, 650
PmaCI	CACGTG	1 cut(s)	224
PmlI	CACGTG	1 cut(s)	224
PpsI	GAGTC	3 cut(s)	401, 582, 650
Ppu21I	YACGTR	1 cut(s)	224
Psp6I	CCWGG	2 cut(s)	355, 691
PspCI	CACGTG	1 cut(s)	224
PspGI	CCWGG	2 cut(s)	355, 691
PspN4I	GGNNCC	2 cut(s)	333, 689
PspPI	GGNCC	3 cut(s)	253, 263, 299
RsaI	GTAC	2 cut(s)	593, 837
RsaNI	GTAC	2 cut(s)	592, 836
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	1 cut(s)	818
Sau3AI	GATC	4 cut(s)	63, 211, 609, 708
Sau96I	GGNCC	3 cut(s)	253, 263, 299
SchI	GAGTC	3 cut(s)	402, 583, 650
ScrFI	CCNGG	2 cut(s)	357, 693
SduI	GDGCHC	3 cut(s)	334, 407, 690
SexAI	ACCWGGT	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	382
SfiI	GGCCNNNNNGGCC	1 cut(s)	261
Sse9I	AATT	2 cut(s)	141, 154
SsiI	CCGC	1 cut(s)	679
SspMI	CTAG	5 cut(s)	5, 303, 582, 683, 868
StyD4I	CCNGG	2 cut(s)	355, 691
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	4 cut(s)	409, 479, 500, 591
TaiI	ACGT	3 cut(s)	208, 226, 238
TaqI	TCGA	2 cut(s)	442, 748
TaqII	GACCGA	1 cut(s)	785
TasI	AATT	2 cut(s)	141, 154
TfiI	GAWTC	3 cut(s)	42, 604, 617
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	3 cut(s)	412, 503, 658
TseFI	GTSAC	3 cut(s)	409, 628, 698
TseI	GCWGC	1 cut(s)	817
Tsp45I	GTSAC	3 cut(s)	409, 628, 698
TspDTI	ATGAA	3 cut(s)	204, 387, 552
TspGWI	ACGGA	2 cut(s)	701, 747
TspRI	CASTG	3 cut(s)	412, 503, 658
Van91I	CCANNNNNTGG	1 cut(s)	276
XapI	RAATTY	1 cut(s)	141
XmaJI	CCTAGG	1 cut(s)	682
XspI	CTAG	5 cut(s)	5, 303, 582, 683, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.