Rmu_ssc0000442.1_g000036

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000442.1
Physical Location & Seq
Reverse (-)
183080 .. 183394
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000442.1_g000036.1.cds

Sequence Viewer

Length: 315 bp
atgagatatgctctgtatgcaccaagagctaatcgaaccttgttaagtttcaaagctatttgcgccaacggttatccagtagaaacacactgtgagaatggaactgaataccttgatattaactctaatgaatatggaaggaaacgcattttagagaaacttatgagtcaatctagtggactgtaccgcactacgattaggatcattgaatcctatgctatcaccaacaatgaaatgtgggacactgactcatacagtctttggcatgaccgcctagggcaccccgatcgtgacatgatgatccgtattttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

12.24

Weight (kDa)

6.82

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 279
AciI CCGC 2 cut(s) 187, 271
AclWI GGATC 2 cut(s) 209, 295
AdeI CACNNNGTG 1 cut(s) 92
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 2 cut(s) 52, 209
AluBI AGCT 2 cut(s) 29, 56
AluI AGCT 2 cut(s) 29, 56
AlwI GGATC 2 cut(s) 209, 295
AspA2I CCTAGG 1 cut(s) 274
AspLEI GCGC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 214
AvrII CCTAGG 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 282
BanI GGYRCC 1 cut(s) 279
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BfaI CTAG 2 cut(s) 174, 275
BlnI CCTAGG 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 281
BplI GAGNNNNNCTC 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 77
Bse8I GATNNNNATC 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 274
BseJI GATNNNNATC 1 cut(s) 200
BseNI ACTGG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 282
Bsh1285I CGRYCG 1 cut(s) 289
BshNI GGYRCC 1 cut(s) 279
BsiEI CGRYCG 1 cut(s) 289
BslFI GGGAC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 3 cut(s) 201, 286, 300
BspACI CCGC 2 cut(s) 187, 271
BspLI GGNNCC 1 cut(s) 281
BspPI GGATC 2 cut(s) 209, 295
BspT107I GGYRCC 1 cut(s) 279
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 3 cut(s) 201, 286, 300
BssT1I CCWWGG 1 cut(s) 274
Bst4CI ACNGT 4 cut(s) 71, 92, 183, 257
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 3 cut(s) 204, 289, 303
BstMBI GATC 3 cut(s) 201, 286, 300
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 3 cut(s) 17, 26, 62
BstSLI GKGCMC 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 88, 243
CfoI GCGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 184
CviAII CATG 2 cut(s) 266, 295
CviJI RGCY 2 cut(s) 29, 56
CviKI_1 RGCY 2 cut(s) 29, 56
CviQI GTAC 1 cut(s) 184
DpnI GATC 3 cut(s) 203, 288, 302
DpnII GATC 3 cut(s) 201, 286, 300
DraIII CACNNNGTG 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 2 cut(s) 269, 298
FaiI YATR 9 cut(s) 9, 18, 135, 164, 216, 253, 267, 296, 313
FaqI GGGAC 1 cut(s) 254
FatI CATG 2 cut(s) 265, 294
FspBI CTAG 2 cut(s) 174, 275
GlaI GCGC 1 cut(s) 64
HhaI GCGC 1 cut(s) 65
Hin1II CATG 2 cut(s) 269, 298
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 3 cut(s) 166, 209, 248
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 179
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 4 cut(s) 71, 92, 183, 257
HpyCH4V TGCA 1 cut(s) 20
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 26, 62
Hsp92II CATG 2 cut(s) 269, 298
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 3 cut(s) 201, 286, 300
LpnPI CCDG 1 cut(s) 90
MaeI CTAG 2 cut(s) 174, 275
MaeIII GTNAC 1 cut(s) 290
MalI GATC 3 cut(s) 203, 288, 302
MboI GATC 3 cut(s) 201, 286, 300
MhlI GDGCHC 1 cut(s) 282
MlyI GAGTC 2 cut(s) 175, 242
MseI TTAA 2 cut(s) 44, 120
MwoI GCNNNNNNNGC 3 cut(s) 17, 26, 62
NdeII GATC 3 cut(s) 201, 286, 300
NlaIII CATG 2 cut(s) 269, 298
NlaIV GGNNCC 1 cut(s) 281
NmuCI GTSAC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 209
Ple19I CGATCG 1 cut(s) 289
PleI GAGTC 2 cut(s) 174, 242
PpsI GAGTC 2 cut(s) 174, 242
PspN4I GGNNCC 1 cut(s) 281
PvuI CGATCG 1 cut(s) 289
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 2 cut(s) 44, 120
Sau3AI GATC 3 cut(s) 201, 286, 300
SchI GAGTC 2 cut(s) 175, 242
SduI GDGCHC 1 cut(s) 282
SetI ASST 4 cut(s) 31, 41, 58, 114
SsiI CCGC 2 cut(s) 187, 271
SspMI CTAG 2 cut(s) 174, 275
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 4 cut(s) 71, 92, 183, 257
TaqI TCGA 1 cut(s) 34
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 2 cut(s) 44, 120
Tru9I TTAA 2 cut(s) 44, 120
TscAI CASTG 2 cut(s) 95, 250
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 144, 246
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 2 cut(s) 95, 250
XmaJI CCTAGG 1 cut(s) 274
XspI CTAG 2 cut(s) 174, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.