Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Forward (+)

24535570 .. 24553686

Gene Structure 18117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAATAGACATATTCGTAGGGAAGTTTGTTGTCCGGTTAAAAGTGTTATTACGCACACCATACTCCCAGATCGGAGATATTTTTCAAACTTATTGTCTATTCATACCTCTGTGACAATCGTATCGTGGCAATCGAACCCGATAGAGGGTTATGGTAAAACCCACCGTATGTTGTCCAATGGTACCGAACCTACCATTAATGAGGCCTTATATTCTCCACGTTCCGGAAGAGCGTTATTGAGTATTAAGGATATTCGAACCAACGGTTATTACGCTGAAACCACCGAGAAAAATGAGTTTAATATCTTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.93

Weight (kDa)

9.34

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pol_BBD	PF22936	18 - 90	2.7e-06	Pol polyprotein, beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	182
AccIII	TCCGGA	1 cut(s)	224
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	3 cut(s)	145, 146, 224
AgsI	TTSAA	1 cut(s)	87
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AseI	ATTAAT	1 cut(s)	198
Asp718I	GGTACC	1 cut(s)	182
AsuII	TTCGAA	1 cut(s)	256
BaeI	ACNNNNGTAYC	2 cut(s)	105, 138
BanI	GGYRCC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	184
Bpu14I	TTCGAA	1 cut(s)	256
BsaWI	WCCGGW	2 cut(s)	34, 224
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 146, 224
BseAI	TCCGGA	1 cut(s)	224
BseLI	CCNNNNNNNGG	3 cut(s)	145, 146, 224
BshFI	GGCC	1 cut(s)	206
BshNI	GGYRCC	1 cut(s)	182
BsiSI	CCGG	2 cut(s)	35, 225
BslI	CCNNNNNNNGG	3 cut(s)	145, 146, 224
BsnI	GGCC	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	256
Bsp13I	TCCGGA	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	206
BspEI	TCCGGA	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	184
BspQI	GCTCTTC	1 cut(s)	223
BspT104I	TTCGAA	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	182
BssMI	GATC	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	167, 266
Bst6I	CTCTTC	1 cut(s)	223
BstBI	TTCGAA	1 cut(s)	256
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	183
CviJI	RGCY	1 cut(s)	206
CviKI_1	RGCY	1 cut(s)	206
CviQI	GTAC	1 cut(s)	183
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
Eco147I	AGGCCT	1 cut(s)	206
FaiI	YATR	7 cut(s)	12, 62, 105, 153, 170, 211, 313
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	2 cut(s)	35, 225
HpaII	CCGG	2 cut(s)	35, 225
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	1 cut(s)	225
HpyCH4III	ACNGT	2 cut(s)	167, 266
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	1 cut(s)	311
HpySE526I	ACGT	1 cut(s)	220
Kpn2I	TCCGGA	1 cut(s)	224
KpnI	GGTACC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	70
LguI	GCTCTTC	1 cut(s)	223
LpnPI	CCDG	3 cut(s)	48, 81, 238
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	1 cut(s)	240
MnlI	CCTC	3 cut(s)	118, 139, 196
MroI	TCCGGA	1 cut(s)	224
MseI	TTAA	4 cut(s)	39, 198, 246, 300
MspI	CCGG	2 cut(s)	35, 225
NdeII	GATC	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	112
NspV	TTCGAA	1 cut(s)	256
PceI	AGGCCT	1 cut(s)	206
PciSI	GCTCTTC	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PshBI	ATTAAT	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	184
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	223
SaqAI	TTAA	4 cut(s)	39, 198, 246, 300
Sau3AI	GATC	1 cut(s)	70
SetI	ASST	3 cut(s)	110, 193, 223
SfuI	TTCGAA	1 cut(s)	256
SgeI	CNNG	7 cut(s)	47, 80, 138, 151, 231, 237, 298
SseBI	AGGCCT	1 cut(s)	206
StuI	AGGCCT	1 cut(s)	206
TaaI	ACNGT	2 cut(s)	167, 266
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	2 cut(s)	134, 256
Tru1I	TTAA	4 cut(s)	39, 198, 246, 300
Tru9I	TTAA	4 cut(s)	39, 198, 246, 300
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	17, 92
VspI	ATTAAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.