Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Reverse (-)

59346585 .. 59350436

Gene Structure 3852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G031230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2160 bp

ATGTTTTTAAGGCGACATATTGATCCTAGCCTACGCTGGGAATACCTCCAGTTGAAGACACCCAAAGAATTGTGGGATGCCCTTAAGGGACGTTTTGGGAACATTCATGACACCTTGCTCCCAGAATTGACTGTTCAGTGGAATGAAATCCGAATGAATCGAGGAGAAATCGAGTGCTTAGTTGATAGTGGGACTACCCACACCATATTAAGGAATAGGCAATTATTTATTGAATTAATAGCCTATAATTCCTCTGTGACTACGATGATTGGATCATCACAAGTAATAAAAGGGCGAGGAACTGCCAAATTTTTGCTGCCTAATGGCACAACATTTAAAGTCACAGACGCTCTATATGCACCTAGAGCTAATCGAACCTTGTTAAGTTTCAAAGATATTCGTGCCAACGGTTATCATGTAGAAACACACTGTGAGAATGGAATTGAATACCTTTATATTACCTCTAATGAATGTGGAAGGAAACGCATTTTAGAGAAACTTATGAGTCAATCTAGTGGACTGTACCTCACTACGATTCGGATCATTGAATCATATGTTGTCACCAACAATGAAATGTGGGACACTGACTCATACAGGCTTTGGCATGACCGCCTAGGGCACCCTGAAAAATCCGCCACACTGAAAGGTGTCGGTCCTCGTATTACTCAAATACAGCCATTACATTCTGAAGTACCAGAAGCAGTACCTCCATCCCATTATGCCTCATTGACTATTTCAAAGGCACATCACTCGTTTTGCAAAGCCTGCTCTTTAGCAAAAACAGGATCGAGACCTTCCTATGCTAAAGATACAAAACAAAATATTCCATTCTTACAAAGGATACAAGGAGACATCTGTGGACCTATCCATCCAGAATGCGGACCATTCAAGTACTTTATGGTTCTGGTGGATGCCTCGACACGCTGGTCACATGTCGTTTTATTGTCCACAAGAAATGCTGCATTTGCAAAACTCCTAGCACAGATTATACGCTTAAGGGCTCACCACCCTGATCACCCTATCAAGTCTATAAGGCTTGATAATGCTGGAGAGTTTACATCAAAAGCATTTGATGATTATTGCATGTCTATTGGGATCGATGTAGAGCATCCTGTGCCCCATGTACATACACAAAATGGTCTCGCAGAAGCCACCATCAAAAGGCTACAGATGGTGGCTAGGGCATTGGTTATGCGCACCAACTTGCCTATATCTGCATGGGGTTATGCAATATTGCACGCAGCTTTACTCATTCGTTTCAGACCCACTGCTGGCCAACCATTTTCTGCGTACCAGTTGGTAACTGGATATGAGCCTGACATTTCACACTTACGCATATTTGGTTGCGCCGTATATGTGCCTATTGCGCCCCCACAGCGCACTAAAATGGGTCCTCAGAGACGATTAATGAAAAGAATAGTCGATCTTCAAAACGTAGCAGATTCGATGCCTGATGCGTTTTCTGATATCGCAAAAGTGACGAGATCACATATACTAGCTGCAAATGTGCCTGCAAGGTTAGAAGTCCCCAACAAGGGGCACGGTGCCGTAGATAGAGGCACTACAACCACACTTAGTGGAGGTATGGTTGAGGCCGTGGCTCCTCAAAGGAAGAGGGGGAGGCCACTAGGTTCGATTGACACTCACCCAAGGAAGAAGAGGGCGAGTAAGGCACAAACCGATCCATTAATCATCAATGTAGAGAATCCCTCTCATGAGATTGTCTCTGATTATAGCTATGTCCATGAATCAATACTGGAGGACGCTCCGATGTTTGAAATGATTCCAGAGAACAAAGAAATCTCAATGGATTATGAGAGTGCGTATGAGTTGATAGAAAGATCTTCCATACACATTGATGATGTATTTGCATACACTGTTGCTCAGGAAATCATAGAGCACGATGATATCGAACCACGCTCTGTTGCAGAATGTCAACAAAGAGCAGATTGGCCTAAATGGAAAGAAGCAATCCAGGCAGAATTAGATTCTCTGACAAAGAGACAGGTATTTGGTCCGGTAGTGCTAACCCCACCAAGTGTAAAGCCTGTAGGACATAAATGGGTCTTTGTTAGAAAGCGTAATGAGAAGAATGAAGTTGAAACGCTCACTTTACGGATTGAAACAATCTGGACGGATGTGGTATACCCGTCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

719

Amino Acids

81.34

Weight (kDa)

8.84

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pol_BBD	PF22936	60 - 138	5e-10	Pol polyprotein, beta-barrel domain
rve	PF00665	279 - 370	4.2e-10	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	925
Acc16I	TGCGCA	1 cut(s)	1196
AccB1I	GGYRCC	2 cut(s)	618, 1544
AccI	GTMKAC	1 cut(s)	2145
AciI	CCGC	3 cut(s)	610, 633, 879
AclWI	GGATC	6 cut(s)	17, 280, 548, 793, 1103, 1676
AcoI	YGGCCR	1 cut(s)	1273
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	708
AdeI	CACNNNGTG	3 cut(s)	431, 1577, 2039
AfaI	GTAC	6 cut(s)	524, 693, 705, 893, 1125, 1292
AfiI	CCNNNNNNNGG	8 cut(s)	37, 210, 878, 1161, 1271, 1534, 1535, 1536
AflII	CTTAAG	2 cut(s)	83, 994
AflIII	ACRYGT	1 cut(s)	931
AjnI	CCWGG	1 cut(s)	1974
AluBI	AGCT	4 cut(s)	368, 1244, 1499, 1737
AluI	AGCT	4 cut(s)	368, 1244, 1499, 1737
Alw21I	GWGCWC	1 cut(s)	1902
Alw26I	GTCTC	6 cut(s)	784, 843, 1145, 1393, 1729, 1996
AlwI	GGATC	6 cut(s)	17, 280, 548, 793, 1103, 1676
AoxI	GGCC	4 cut(s)	1273, 1593, 1622, 1952
ApeKI	GCWGC	4 cut(s)	316, 959, 1241, 1499
ApoI	RAATTY	1 cut(s)	308
AseI	ATTAAT	3 cut(s)	236, 1406, 1688
Asp700I	GAANNNNTTC	1 cut(s)	1782
AspA2I	CCTAGG	1 cut(s)	613
AspLEI	GCGC	4 cut(s)	1197, 1349, 1369, 1380
AspS9I	GGNCC	5 cut(s)	653, 860, 881, 1391, 2015
AsuHPI	GGTGA	4 cut(s)	553, 995, 1007, 1637
AvaII	GGWCC	5 cut(s)	653, 860, 881, 1391, 2015
AvrII	CCTAGG	1 cut(s)	613
BaeGI	GKGCMC	3 cut(s)	621, 1119, 1542
BalI	TGGCCA	1 cut(s)	1275
BanI	GGYRCC	2 cut(s)	618, 1544
BanII	GRGCYC	1 cut(s)	1003
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	1902
BbvI	GCAGC	4 cut(s)	303, 946, 1253, 1486
BccI	CCATC	4 cut(s)	718, 876, 1163, 1165
BceAI	ACGGC	3 cut(s)	1334, 1532, 1580
BcgI	CGANNNNNNTGC	2 cut(s)	732, 766
BciT130I	CCWGG	1 cut(s)	1976
BciVI	GTATCC	1 cut(s)	834
BclI	TGATCA	1 cut(s)	1012
BcoDI	GTCTC	6 cut(s)	784, 843, 1145, 1393, 1729, 1996
BfaI	CTAG	8 cut(s)	27, 363, 513, 614, 977, 1179, 1496, 1628
BfmI	CTRYAG	2 cut(s)	1166, 2049
BfrI	CTTAAG	2 cut(s)	83, 994
BfuI	GTATCC	1 cut(s)	834
BglII	AGATCT	1 cut(s)	1841
BisI	GCNGC	4 cut(s)	317, 960, 1242, 1500
BlnI	CCTAGG	1 cut(s)	613
BlsI	GCNGC	4 cut(s)	318, 961, 1243, 1501
BmcAI	AGTACT	1 cut(s)	893
Bme1390I	CCNGG	1 cut(s)	1976
Bme18I	GGWCC	5 cut(s)	653, 860, 881, 1391, 2015
BmgT120I	GGNCC	5 cut(s)	653, 860, 881, 1391, 2015
BmiI	GGNNCC	4 cut(s)	620, 1392, 1546, 1602
BmrFI	CCNGG	1 cut(s)	1976
BmsI	GCATC	5 cut(s)	67, 901, 1117, 1437, 1444
BpiI	GAAGAC	1 cut(s)	62
BplI	GAGNNNNNCTC	4 cut(s)	1694, 1726, 1709, 1741
BpmI	CTGGAG	3 cut(s)	32, 1068, 1778
Bpu10I	CCTNAGC	1 cut(s)	1884
Bsa29I	ATCGAT	1 cut(s)	1098
BsaBI	GATNNNNATC	1 cut(s)	539
BsaI	GGTCTC	2 cut(s)	784, 1145
BsaJI	CCNNGG	3 cut(s)	613, 1596, 1649
BsaWI	WCCGGW	1 cut(s)	2017
BsaXI	ACNNNNNCTCC	2 cut(s)	1572, 1602
Bsc4I	CCNNNNNNNGG	8 cut(s)	37, 210, 878, 1161, 1271, 1534, 1535, 1536
Bse1I	ACTGG	4 cut(s)	49, 1294, 1309, 1761
Bse8I	GATNNNNATC	1 cut(s)	539
BseBI	CCWGG	1 cut(s)	1976
BseCI	ATCGAT	1 cut(s)	1098
BseDI	CCNNGG	3 cut(s)	613, 1596, 1649
BseGI	GGATG	6 cut(s)	82, 710, 868, 916, 1108, 2143
BseJI	GATNNNNATC	1 cut(s)	539
BseLI	CCNNNNNNNGG	8 cut(s)	37, 210, 878, 1161, 1271, 1534, 1535, 1536
BseMII	CTCAG	2 cut(s)	1409, 1898
BseNI	ACTGG	4 cut(s)	49, 1294, 1309, 1761
BseRI	GAGGAG	2 cut(s)	177, 1593
BseSI	GKGCMC	3 cut(s)	621, 1119, 1542
BseXI	GCAGC	4 cut(s)	303, 946, 1253, 1486
BseYI	CCCAGC	1 cut(s)	36
BshFI	GGCC	4 cut(s)	1275, 1595, 1624, 1954
BshNI	GGYRCC	2 cut(s)	618, 1544
BshVI	ATCGAT	1 cut(s)	1098
BsiHKAI	GWGCWC	1 cut(s)	1902
BsiSI	CCGG	1 cut(s)	2018
BslFI	GGGAC	4 cut(s)	102, 205, 593, 1511
BslI	CCNNNNNNNGG	8 cut(s)	37, 210, 878, 1161, 1271, 1534, 1535, 1536
BsmAI	GTCTC	6 cut(s)	784, 843, 1145, 1393, 1729, 1996
BsmBI	CGTCTC	1 cut(s)	1393
BsmFI	GGGAC	4 cut(s)	102, 205, 593, 1511
BsmI	GAATGC	1 cut(s)	881
BsnI	GGCC	4 cut(s)	1275, 1595, 1624, 1954
Bso31I	GGTCTC	2 cut(s)	784, 1145
Bsp1286I	GDGCHC	5 cut(s)	621, 1003, 1119, 1542, 1902
Bsp1407I	TGTACA	1 cut(s)	1123
BspACI	CCGC	3 cut(s)	610, 633, 879
BspANI	GGCC	4 cut(s)	1275, 1595, 1624, 1954
BspCNI	CTCAG	2 cut(s)	1408, 1897
BspDI	ATCGAT	1 cut(s)	1098
BspHI	TCATGA	2 cut(s)	106, 1714
BspLI	GGNNCC	4 cut(s)	620, 1392, 1546, 1602
BspPI	GGATC	6 cut(s)	17, 280, 548, 793, 1103, 1676
BspT107I	GGYRCC	2 cut(s)	618, 1544
BspTI	CTTAAG	2 cut(s)	83, 994
BspTNI	GGTCTC	2 cut(s)	784, 1145
BsrGI	TGTACA	1 cut(s)	1123
BsrI	ACTGG	4 cut(s)	49, 1294, 1309, 1761
BssECI	CCNNGG	3 cut(s)	613, 1596, 1649
BssNAI	GTATAC	1 cut(s)	2146
BssT1I	CCWWGG	2 cut(s)	613, 1649
Bst1107I	GTATAC	1 cut(s)	2146
Bst2UI	CCWGG	1 cut(s)	1976
Bst4CI	ACNGT	6 cut(s)	133, 410, 431, 522, 1544, 1879
Bst6I	CTCTTC	2 cut(s)	1607, 1652
BstAFI	CTTAAG	2 cut(s)	83, 994
BstAPI	GCANNNNNTGC	2 cut(s)	765, 1114
BstAUI	TGTACA	1 cut(s)	1123
BstC8I	GCNNGC	4 cut(s)	766, 1239, 1273, 1512
BstDEI	CTNAG	5 cut(s)	178, 1395, 1574, 1884, 2154
BstDSI	CCRYGG	1 cut(s)	1596
BstF5I	GGATG	6 cut(s)	82, 710, 868, 916, 1108, 2143
BstHHI	GCGC	4 cut(s)	1197, 1349, 1369, 1380
BstMAI	GTCTC	6 cut(s)	784, 843, 1145, 1393, 1729, 1996
BstMWI	GCNNNNNNNGC	9 cut(s)	356, 365, 765, 965, 1114, 1366, 1375, 1670, 1976
BstNI	CCWGG	1 cut(s)	1976
BstNSI	RCATGY	2 cut(s)	935, 1087
BstSCI	CCNGG	1 cut(s)	1974
BstSFI	CTRYAG	2 cut(s)	1166, 2049
BstSLI	GKGCMC	3 cut(s)	621, 1119, 1542
BstV1I	GCAGC	4 cut(s)	303, 946, 1253, 1486
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	1841
BstYI	RGATCY	1 cut(s)	1841
BstZ17I	GTATAC	1 cut(s)	2146
Bsu15I	ATCGAT	1 cut(s)	1098
BsuI	GTATCC	1 cut(s)	834
BsuRI	GGCC	4 cut(s)	1275, 1595, 1624, 1954
BsuTUI	ATCGAT	1 cut(s)	1098
BtgI	CCRYGG	1 cut(s)	1596
BtsCI	GGATG	6 cut(s)	82, 710, 868, 916, 1108, 2143
BtsI	GCAGTG	1 cut(s)	1266
BtsIMutI	CAGTG	6 cut(s)	143, 427, 582, 638, 1266, 1875
Cac8I	GCNNGC	4 cut(s)	766, 1239, 1273, 1512
CciI	TCATGA	2 cut(s)	106, 1714
CfoI	GCGC	4 cut(s)	1197, 1349, 1369, 1380
Cfr13I	GGNCC	5 cut(s)	653, 860, 881, 1391, 2015
ClaI	ATCGAT	1 cut(s)	1098
CseI	GACGC	2 cut(s)	356, 1772
Csp6I	GTAC	6 cut(s)	523, 692, 704, 892, 1124, 1291
CviAII	CATG	9 cut(s)	107, 416, 605, 932, 1084, 1121, 1218, 1715, 1745
CviQI	GTAC	6 cut(s)	523, 692, 704, 892, 1124, 1291
DdeI	CTNAG	5 cut(s)	178, 1395, 1574, 1884, 2154
DraI	TTTAAA	1 cut(s)	337
DraIII	CACNNNGTG	3 cut(s)	431, 1577, 2039
DrdI	GACNNNNNNGTC	1 cut(s)	925
DseDI	GACNNNNNNGTC	1 cut(s)	925
EaeI	YGGCCR	1 cut(s)	1273
Eam1104I	CTCTTC	2 cut(s)	1607, 1652
EarI	CTCTTC	2 cut(s)	1607, 1652
EciI	GGCGGA	1 cut(s)	622
Eco130I	CCWWGG	2 cut(s)	613, 1649
Eco24I	GRGCYC	1 cut(s)	1003
Eco31I	GGTCTC	2 cut(s)	784, 1145
Eco32I	GATATC	2 cut(s)	1468, 1909
Eco47I	GGWCC	5 cut(s)	653, 860, 881, 1391, 2015
Eco57I	CTGAAG	1 cut(s)	708
EcoO109I	RGGNCCY	1 cut(s)	1391
EcoRII	CCWGG	1 cut(s)	1974
EcoRV	GATATC	2 cut(s)	1468, 1909
EcoT14I	CCWWGG	2 cut(s)	613, 1649
EcoT38I	GRGCYC	1 cut(s)	1003
ErhI	CCWWGG	2 cut(s)	613, 1649
Esp3I	CGTCTC	1 cut(s)	1393
FaeI	CATG	9 cut(s)	110, 419, 608, 935, 1087, 1124, 1221, 1718, 1748
FaqI	GGGAC	4 cut(s)	102, 205, 593, 1511
FatI	CATG	9 cut(s)	106, 415, 604, 931, 1083, 1120, 1217, 1714, 1744
FauNDI	CATATG	1 cut(s)	553
FbaI	TGATCA	1 cut(s)	1012
FblI	GTMKAC	1 cut(s)	2145
Fnu4HI	GCNGC	4 cut(s)	317, 960, 1242, 1500
FokI	GGATG	6 cut(s)	89, 697, 855, 923, 1095, 2150
FriOI	GRGCYC	1 cut(s)	1003
Fsp4HI	GCNGC	4 cut(s)	317, 960, 1242, 1500
FspAI	RTGCGCAY	1 cut(s)	1196
FspBI	CTAG	8 cut(s)	27, 363, 513, 614, 977, 1179, 1496, 1628
FspI	TGCGCA	1 cut(s)	1196
GlaI	GCGC	4 cut(s)	1196, 1348, 1368, 1379
GluI	GCNGC	4 cut(s)	317, 960, 1242, 1500
GsaI	CCCAGC	1 cut(s)	40
GsuI	CTGGAG	3 cut(s)	32, 1068, 1778
HaeIII	GGCC	4 cut(s)	1275, 1595, 1624, 1954
HapII	CCGG	1 cut(s)	2018
HgaI	GACGC	2 cut(s)	356, 1772
HhaI	GCGC	4 cut(s)	1197, 1349, 1369, 1380
Hin1II	CATG	9 cut(s)	110, 419, 608, 935, 1087, 1124, 1221, 1718, 1748
Hin6I	GCGC	4 cut(s)	1195, 1347, 1367, 1378
HinP1I	GCGC	4 cut(s)	1195, 1347, 1367, 1378
HincII	GTYRAC	1 cut(s)	1937
HindII	GTYRAC	1 cut(s)	1937
HpaII	CCGG	1 cut(s)	2018
HphI	GGTGA	4 cut(s)	553, 995, 1007, 1637
Hpy166II	GTNNAC	6 cut(s)	518, 860, 948, 1056, 1937, 2146
Hpy188I	TCNGA	9 cut(s)	152, 540, 688, 1262, 1398, 1465, 1729, 1770, 1995
Hpy188III	TCNNGA	7 cut(s)	107, 789, 872, 1715, 1787, 1886, 2131
Hpy8I	GTNNAC	6 cut(s)	518, 860, 948, 1056, 1937, 2146
HpyAV	CCTTC	2 cut(s)	471, 804
HpyCH4III	ACNGT	6 cut(s)	133, 410, 431, 522, 1544, 1879
HpyCH4IV	ACGT	2 cut(s)	91, 1434
HpyF10VI	GCNNNNNNNGC	9 cut(s)	356, 365, 765, 965, 1114, 1366, 1375, 1670, 1976
HpyF3I	CTNAG	5 cut(s)	178, 1395, 1574, 1884, 2154
HpySE526I	ACGT	2 cut(s)	91, 1434
Hsp92II	CATG	9 cut(s)	110, 419, 608, 935, 1087, 1124, 1221, 1718, 1748
HspAI	GCGC	4 cut(s)	1195, 1347, 1367, 1378
Ksp22I	TGATCA	1 cut(s)	1012
LmnI	GCTCC	3 cut(s)	123, 1606, 1771
Lsp1109I	GCAGC	4 cut(s)	303, 946, 1253, 1486
LweI	GCATC	5 cut(s)	67, 901, 1117, 1437, 1444
MaeI	CTAG	8 cut(s)	27, 363, 513, 614, 977, 1179, 1496, 1628
MaeII	ACGT	2 cut(s)	91, 1434
MaeIII	GTNAC	6 cut(s)	256, 340, 559, 927, 1300, 1477
MboII	GAAGA	7 cut(s)	67, 1418, 1624, 1666, 1669, 1836, 2101
MflI	RGATCY	1 cut(s)	1841
MhlI	GDGCHC	5 cut(s)	621, 1003, 1119, 1542, 1902
MlsI	TGGCCA	1 cut(s)	1275
MluCI	AATT	8 cut(s)	68, 125, 221, 233, 247, 308, 441, 1982
MluNI	TGGCCA	1 cut(s)	1275
MlyI	GAGTC	2 cut(s)	514, 581
Mox20I	TGGCCA	1 cut(s)	1275
MroXI	GAANNNNTTC	1 cut(s)	1782
MscI	TGGCCA	1 cut(s)	1275
MseI	TTAA	9 cut(s)	8, 84, 209, 236, 336, 383, 995, 1406, 1688
MslI	CAYNNNNRTG	2 cut(s)	1385, 1857
Msp20I	TGGCCA	1 cut(s)	1275
MspCI	CTTAAG	2 cut(s)	83, 994
MspI	CCGG	1 cut(s)	2018
MspR9I	CCNGG	1 cut(s)	1976
Mva1269I	GAATGC	1 cut(s)	881
MvaI	CCWGG	1 cut(s)	1976
MwoI	GCNNNNNNNGC	9 cut(s)	356, 365, 765, 965, 1114, 1366, 1375, 1670, 1976
NdeI	CATATG	1 cut(s)	553
NlaIII	CATG	9 cut(s)	110, 419, 608, 935, 1087, 1124, 1221, 1718, 1748
NlaIV	GGNNCC	4 cut(s)	620, 1392, 1546, 1602
NmuCI	GTSAC	5 cut(s)	256, 340, 559, 927, 1477
NsbI	TGCGCA	1 cut(s)	1196
NspI	RCATGY	2 cut(s)	935, 1087
PagI	TCATGA	2 cut(s)	106, 1714
PciI	ACATGT	1 cut(s)	931
PcsI	WCGNNNNNNNCGW	1 cut(s)	1908
PctI	GAATGC	1 cut(s)	881
PdmI	GAANNNNTTC	1 cut(s)	1782
PfeI	GAWTC	8 cut(s)	157, 535, 548, 1442, 1705, 1748, 1783, 1988
PkrI	GCNGC	4 cut(s)	318, 961, 1243, 1501
PleI	GAGTC	2 cut(s)	513, 581
PpsI	GAGTC	2 cut(s)	513, 581
PpuMI	RGGWCCY	1 cut(s)	1391
PscI	ACATGT	1 cut(s)	931
PshBI	ATTAAT	3 cut(s)	236, 1406, 1688
Psp5II	RGGWCCY	1 cut(s)	1391
Psp6I	CCWGG	1 cut(s)	1974
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	1974
PspN4I	GGNNCC	4 cut(s)	620, 1392, 1546, 1602
PspPI	GGNCC	5 cut(s)	653, 860, 881, 1391, 2015
PspPPI	RGGWCCY	1 cut(s)	1391
PsuI	RGATCY	1 cut(s)	1841
RsaI	GTAC	6 cut(s)	524, 693, 705, 893, 1125, 1292
RsaNI	GTAC	6 cut(s)	523, 692, 704, 892, 1124, 1291
RseI	CAYNNNNRTG	2 cut(s)	1385, 1857
SaqAI	TTAA	9 cut(s)	8, 84, 209, 236, 336, 383, 995, 1406, 1688
SatI	GCNGC	4 cut(s)	317, 960, 1242, 1500
Sau96I	GGNCC	5 cut(s)	653, 860, 881, 1391, 2015
ScaI	AGTACT	1 cut(s)	893
SchI	GAGTC	2 cut(s)	514, 581
ScrFI	CCNGG	1 cut(s)	1976
SduI	GDGCHC	5 cut(s)	621, 1003, 1119, 1542, 1902
SfaNI	GCATC	5 cut(s)	67, 901, 1117, 1437, 1444
SfcI	CTRYAG	2 cut(s)	1166, 2049
SinI	GGWCC	5 cut(s)	653, 860, 881, 1391, 2015
SmiMI	CAYNNNNRTG	2 cut(s)	1385, 1857
SmlI	CTYRAG	2 cut(s)	83, 994
SmoI	CTYRAG	2 cut(s)	83, 994
Sse9I	AATT	8 cut(s)	68, 125, 221, 233, 247, 308, 441, 1982
SsiI	CCGC	3 cut(s)	610, 633, 879
SspI	AATATT	2 cut(s)	823, 1233
SspMI	CTAG	8 cut(s)	27, 363, 513, 614, 977, 1179, 1496, 1628
StyD4I	CCNGG	1 cut(s)	1974
StyI	CCWWGG	2 cut(s)	613, 1649
TaaI	ACNGT	6 cut(s)	133, 410, 431, 522, 1544, 1879
TaiI	ACGT	2 cut(s)	94, 1437
TaqII	GACCGA	1 cut(s)	641
TasI	AATT	8 cut(s)	68, 125, 221, 233, 247, 308, 441, 1982
TatI	WGTACW	2 cut(s)	891, 1123
TfiI	GAWTC	8 cut(s)	157, 535, 548, 1442, 1705, 1748, 1783, 1988
Tru1I	TTAA	9 cut(s)	8, 84, 209, 236, 336, 383, 995, 1406, 1688
Tru9I	TTAA	9 cut(s)	8, 84, 209, 236, 336, 383, 995, 1406, 1688
TscAI	CASTG	6 cut(s)	143, 434, 589, 645, 1273, 1882
TseFI	GTSAC	5 cut(s)	256, 340, 559, 927, 1477
TseI	GCWGC	4 cut(s)	316, 959, 1241, 1499
Tsp45I	GTSAC	5 cut(s)	256, 340, 559, 927, 1477
TspDTI	ATGAA	8 cut(s)	95, 159, 170, 483, 585, 1424, 1761, 2109
TspGWI	ACGGA	2 cut(s)	2131, 2150
TspRI	CASTG	6 cut(s)	143, 434, 589, 645, 1273, 1882
Vha464I	CTTAAG	2 cut(s)	83, 994
VpaK11BI	GGWCC	5 cut(s)	653, 860, 881, 1391, 2015
VspI	ATTAAT	3 cut(s)	236, 1406, 1688
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	2 cut(s)	935, 1087
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1301
XmaJI	CCTAGG	1 cut(s)	613
XmiI	GTMKAC	1 cut(s)	2145
XmnI	GAANNNNTTC	1 cut(s)	1782
XspI	CTAG	8 cut(s)	27, 363, 513, 614, 977, 1179, 1496, 1628
ZrmI	AGTACT	1 cut(s)	893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.