Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000817.1

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Forward (+)

6970 .. 7713

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000817.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgttgcctacatattcctctgtgactacgatggctggaccatcaggtttagttcaaggacatgaaatggcccaattcctattgccaaatggcaccttgattaaagtcactgaagctctctacgctcttaaggcaaatcgaaccttattgagttttaaagatataagagccaacggattccatgcggaaacgcataatgagaacggaaaagagttcgtttgcattacctttaatgattgcggacgaaagcgcatcttagagaagcttatgtcttctggcgttgcagccttcttgtggcgccatagggctgcccaagtcctatatgatgacaccatcaatggcgccaaccatgagcatgactccatggttgcctctcctcgtggccatgacgccacacacaccaatttccatggctctaatgccatgatgggaaatgtagtcacacactttgcttctaatagcgctacggacgctcaggcccaaccaaaatcctcattggttgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

168

Amino Acids

18.26

Weight (kDa)

7.16

Isoelectric Point (pI)

20.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	92, 297, 341
AciI	CCGC	2 cut(s)	185, 240
AcoI	YGGCCR	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	132
AcyI	GRCGYC	3 cut(s)	298, 342, 390
AfeI	AGCGCT	1 cut(s)	463
AfiI	CCNNNNNNNGG	1 cut(s)	294
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	56
AluBI	AGCT	2 cut(s)	116, 265
AluI	AGCT	2 cut(s)	116, 265
Aor51HI	AGCGCT	1 cut(s)	463
AoxI	GGCC	3 cut(s)	69, 382, 477
ApeKI	GCWGC	2 cut(s)	284, 308
AspLEI	GCGC	4 cut(s)	252, 300, 344, 464
AspS9I	GGNCC	3 cut(s)	38, 70, 478
AvaII	GGWCC	1 cut(s)	38
BalI	TGGCCA	1 cut(s)	384
BanI	GGYRCC	3 cut(s)	92, 297, 341
BauI	CACGAG	1 cut(s)	378
BbsI	GAAGAC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	295, 296
BccI	CCATC	4 cut(s)	25, 49, 341, 421
BfoI	RGCGCY	3 cut(s)	301, 345, 465
BfrI	CTTAAG	1 cut(s)	128
BisI	GCNGC	2 cut(s)	285, 309
BlsI	GCNGC	2 cut(s)	286, 310
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	3 cut(s)	38, 70, 478
BmiI	GGNNCC	3 cut(s)	94, 299, 343
BmsI	GCATC	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	264
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
Bpu10I	CCTNAGC	1 cut(s)	474
BsaHI	GRCGYC	3 cut(s)	298, 342, 390
BsaJI	CCNNGG	2 cut(s)	363, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	363, 409
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	488
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	295, 296
BshFI	GGCC	3 cut(s)	71, 384, 479
BshNI	GGYRCC	3 cut(s)	92, 297, 341
BslI	CCNNNNNNNGG	1 cut(s)	294
BsnI	GGCC	3 cut(s)	71, 384, 479
Bsp19I	CCATGG	2 cut(s)	363, 409
BspACI	CCGC	2 cut(s)	185, 240
BspANI	GGCC	3 cut(s)	71, 384, 479
BspCNI	CTCAG	1 cut(s)	487
BspLI	GGNNCC	3 cut(s)	94, 299, 343
BspT107I	GGYRCC	3 cut(s)	92, 297, 341
BspTI	CTTAAG	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	363, 409
BssNI	GRCGYC	3 cut(s)	298, 342, 390
BssSI	CACGAG	1 cut(s)	378
BssT1I	CCWWGG	2 cut(s)	363, 409
Bst2BI	CACGAG	1 cut(s)	378
BstACI	GRCGYC	3 cut(s)	298, 342, 390
BstAFI	CTTAAG	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	256, 474
BstDSI	CCRYGG	2 cut(s)	363, 409
BstH2I	RGCGCY	3 cut(s)	301, 345, 465
BstHHI	GCGC	4 cut(s)	252, 300, 344, 464
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 131, 470
BstV1I	GCAGC	2 cut(s)	295, 296
BstV2I	GAAGAC	1 cut(s)	264
BsuRI	GGCC	3 cut(s)	71, 384, 479
BtgI	CCRYGG	2 cut(s)	363, 409
BtsIMutI	CAGTG	1 cut(s)	108
CfoI	GCGC	4 cut(s)	252, 300, 344, 464
Cfr13I	GGNCC	3 cut(s)	38, 70, 478
CseI	GACGC	2 cut(s)	398, 479
CviAII	CATG	8 cut(s)	62, 182, 350, 356, 364, 386, 410, 424
DdeI	CTNAG	2 cut(s)	256, 474
DinI	GGCGCC	2 cut(s)	299, 343
DraI	TTTAAA	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	382
Eco130I	CCWWGG	2 cut(s)	363, 409
Eco47I	GGWCC	1 cut(s)	38
Eco47III	AGCGCT	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	132
EcoT14I	CCWWGG	2 cut(s)	363, 409
EgeI	GGCGCC	2 cut(s)	299, 343
EheI	GGCGCC	2 cut(s)	299, 343
ErhI	CCWWGG	2 cut(s)	363, 409
FaeI	CATG	8 cut(s)	65, 185, 353, 359, 367, 389, 413, 427
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FatI	CATG	8 cut(s)	61, 181, 349, 355, 363, 385, 409, 423
Fnu4HI	GCNGC	2 cut(s)	285, 309
Fsp4HI	GCNGC	2 cut(s)	285, 309
GlaI	GCGC	4 cut(s)	251, 299, 343, 463
GluI	GCNGC	2 cut(s)	285, 309
HaeII	RGCGCY	3 cut(s)	301, 345, 465
HaeIII	GGCC	3 cut(s)	71, 384, 479
HgaI	GACGC	2 cut(s)	398, 479
HhaI	GCGC	4 cut(s)	252, 300, 344, 464
Hin1I	GRCGYC	3 cut(s)	298, 342, 390
Hin1II	CATG	8 cut(s)	65, 185, 353, 359, 367, 389, 413, 427
Hin6I	GCGC	4 cut(s)	250, 298, 342, 462
HinP1I	GCGC	4 cut(s)	250, 298, 342, 462
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	2 cut(s)	177, 359
HpyAV	CCTTC	1 cut(s)	298
HpyCH4V	TGCA	2 cut(s)	222, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 131, 470
HpyF3I	CTNAG	2 cut(s)	256, 474
Hsp92I	GRCGYC	3 cut(s)	298, 342, 390
Hsp92II	CATG	8 cut(s)	65, 185, 353, 359, 367, 389, 413, 427
HspAI	GCGC	4 cut(s)	250, 298, 342, 462
KasI	GGCGCC	2 cut(s)	297, 341
LpnPI	CCDG	4 cut(s)	21, 30, 261, 461
Lsp1109I	GCAGC	2 cut(s)	295, 296
LweI	GCATC	1 cut(s)	261
MaeIII	GTNAC	3 cut(s)	22, 106, 439
MboII	GAAGA	1 cut(s)	264
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	2 cut(s)	74, 403
MluNI	TGGCCA	1 cut(s)	384
Mly113I	GGCGCC	2 cut(s)	298, 342
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	4 cut(s)	28, 382, 387, 502
Mox20I	TGGCCA	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	5 cut(s)	102, 129, 156, 231, 505
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	384
MspCI	CTTAAG	1 cut(s)	128
MwoI	GCNNNNNNNGC	3 cut(s)	122, 131, 470
NarI	GGCGCC	2 cut(s)	298, 342
NcoI	CCATGG	2 cut(s)	363, 409
NlaIII	CATG	8 cut(s)	65, 185, 353, 359, 367, 389, 413, 427
NlaIV	GGNNCC	3 cut(s)	94, 299, 343
NmuCI	GTSAC	3 cut(s)	22, 106, 439
PfeI	GAWTC	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	286, 310
PleI	GAGTC	1 cut(s)	353
PluTI	GGCGCC	2 cut(s)	301, 345
PpsI	GAGTC	1 cut(s)	353
PspN4I	GGNNCC	3 cut(s)	94, 299, 343
PspPI	GGNCC	3 cut(s)	38, 70, 478
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	5 cut(s)	102, 129, 156, 231, 505
SatI	GCNGC	2 cut(s)	285, 309
Sau96I	GGNCC	3 cut(s)	38, 70, 478
SchI	GAGTC	1 cut(s)	353
SetI	ASST	6 cut(s)	49, 98, 118, 146, 230, 267
SfaNI	GCATC	1 cut(s)	261
SfoI	GGCGCC	2 cut(s)	299, 343
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	74, 403
SsiI	CCGC	2 cut(s)	185, 240
SspDI	GGCGCC	2 cut(s)	297, 341
StyI	CCWWGG	2 cut(s)	363, 409
TaqI	TCGA	1 cut(s)	139
TasI	AATT	2 cut(s)	74, 403
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	5 cut(s)	102, 129, 156, 231, 505
Tru9I	TTAA	5 cut(s)	102, 129, 156, 231, 505
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	3 cut(s)	22, 106, 439
TseI	GCWGC	2 cut(s)	284, 308
Tsp45I	GTSAC	3 cut(s)	22, 106, 439
TspDTI	ATGAA	1 cut(s)	78
TspGWI	ACGGA	3 cut(s)	189, 219, 482
TspRI	CASTG	1 cut(s)	115
Vha464I	CTTAAG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.