Rmu_sc0001336.1_g000012

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001336.1
OG0002041
Physical Location & Seq
Forward (+)
33448 .. 34011
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001336.1_g000012.1.cds

Sequence Viewer

Length: 564 bp
atgattggatcatcacaagtaataaaagggcgaggaactgccaaatttttgctgcctaatggcacaacatttaaagtcacagacgctctatatgcaccaagagctaatcggaccttggtaagtttcaaagttatttgtgccaatagttatccagtagaaacacactgtgagaatggaactgaataccttgatattaactctaatgaatgtggaaggaaacgcattctagagaaacttatgagtcaatctggtggactgtacctcactacgattcggatcattgaatcctatgttgtcaccaataatgaaatgtgggacactgactcatacaggctttggcatgaccgcctagggcacctcggtcatgacatgatgatccgtattttaaagaactcatatggacatcccttctttcgagtgaaaaataaaatgggagaaaagttcgccacactgcaaggtgtcggtcctagtactgctcaaatgcagccattgccttctgaagtaccagaagcactacctccctcccattatgcctcattgactatttcaaaggcccatcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

187

Amino Acids

21.0

Weight (kDa)

9.13

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 354
AciI CCGC 1 cut(s) 346
AclWI GGATC 3 cut(s) 16, 284, 370
AcsI RAATTY 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 519
AdeI CACNNNGTG 1 cut(s) 167
AfaI GTAC 3 cut(s) 260, 472, 504
AgsI TTSAA 3 cut(s) 127, 284, 549
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
AlwI GGATC 3 cut(s) 16, 284, 370
AoxI GGCC 1 cut(s) 552
ApeKI GCWGC 2 cut(s) 52, 484
ApoI RAATTY 1 cut(s) 44
AspA2I CCTAGG 1 cut(s) 349
AspS9I GGNCC 3 cut(s) 111, 464, 553
AsuHPI GGTGA 1 cut(s) 289
AvaII GGWCC 2 cut(s) 111, 464
AvrII CCTAGG 1 cut(s) 349
BaeGI GKGCMC 1 cut(s) 357
BanI GGYRCC 1 cut(s) 354
BbvI GCAGC 2 cut(s) 39, 496
BfaI CTAG 4 cut(s) 227, 350, 468, 562
BisI GCNGC 2 cut(s) 53, 485
BlnI CCTAGG 1 cut(s) 349
BlsI GCNGC 2 cut(s) 54, 486
BmcAI AGTACT 1 cut(s) 472
Bme18I GGWCC 2 cut(s) 111, 464
BmgT120I GGNCC 3 cut(s) 111, 464, 553
BmiI GGNNCC 1 cut(s) 356
BsaBI GATNNNNATC 1 cut(s) 275
BsaJI CCNNGG 3 cut(s) 114, 349, 358
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 488
Bse8I GATNNNNATC 1 cut(s) 275
BseDI CCNNGG 3 cut(s) 114, 349, 358
BseGI GGATG 1 cut(s) 403
BseJI GATNNNNATC 1 cut(s) 275
BseMI GCAATG 1 cut(s) 488
BseNI ACTGG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 2 cut(s) 39, 496
BshFI GGCC 1 cut(s) 554
BshNI GGYRCC 1 cut(s) 354
BslFI GGGAC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 329
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 1 cut(s) 554
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 3 cut(s) 8, 276, 375
BspACI CCGC 1 cut(s) 346
BspANI GGCC 1 cut(s) 554
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 356
BspPI GGATC 3 cut(s) 16, 284, 370
BspT107I GGYRCC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 488
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 3 cut(s) 114, 349, 358
BssMI GATC 3 cut(s) 8, 276, 375
BssT1I CCWWGG 2 cut(s) 114, 349
Bst4CI ACNGT 2 cut(s) 167, 258
BstAPI GCANNNNNTGC 1 cut(s) 490
BstF5I GGATG 1 cut(s) 403
BstKTI GATC 3 cut(s) 11, 279, 378
BstMBI GATC 3 cut(s) 8, 276, 375
BstMWI GCNNNNNNNGC 3 cut(s) 92, 101, 490
BstSLI GKGCMC 1 cut(s) 357
BstV1I GCAGC 2 cut(s) 39, 496
BsuRI GGCC 1 cut(s) 554
BtsCI GGATG 1 cut(s) 403
BtsI GCAGTG 1 cut(s) 449
BtsIMutI CAGTG 3 cut(s) 163, 318, 449
CciI TCATGA 1 cut(s) 364
Cfr13I GGNCC 3 cut(s) 111, 464, 553
CseI GACGC 1 cut(s) 92
Csp6I GTAC 3 cut(s) 259, 471, 503
CviAII CATG 3 cut(s) 341, 365, 370
CviJI RGCY 4 cut(s) 104, 334, 487, 554
CviKI_1 RGCY 4 cut(s) 104, 334, 487, 554
CviQI GTAC 3 cut(s) 259, 471, 503
DpnI GATC 3 cut(s) 10, 278, 377
DpnII GATC 3 cut(s) 8, 276, 375
DraI TTTAAA 2 cut(s) 73, 387
DraIII CACNNNGTG 1 cut(s) 167
Eco130I CCWWGG 2 cut(s) 114, 349
Eco47I GGWCC 2 cut(s) 111, 464
Eco57I CTGAAG 1 cut(s) 519
EcoT14I CCWWGG 2 cut(s) 114, 349
ErhI CCWWGG 2 cut(s) 114, 349
FaeI CATG 3 cut(s) 344, 368, 373
FaqI GGGAC 1 cut(s) 329
FatI CATG 3 cut(s) 340, 364, 369
FauNDI CATATG 1 cut(s) 397
Fnu4HI GCNGC 2 cut(s) 53, 485
FokI GGATG 1 cut(s) 390
Fsp4HI GCNGC 2 cut(s) 53, 485
FspBI CTAG 4 cut(s) 227, 350, 468, 562
GluI GCNGC 2 cut(s) 53, 485
HaeIII GGCC 1 cut(s) 554
HgaI GACGC 1 cut(s) 92
Hin1II CATG 3 cut(s) 344, 368, 373
HinfI GANTC 4 cut(s) 241, 271, 284, 323
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 3 cut(s) 111, 276, 499
Hpy188III TCNNGA 2 cut(s) 227, 365
Hpy8I GTNNAC 1 cut(s) 254
HpyAV CCTTC 3 cut(s) 207, 418, 504
HpyCH4III ACNGT 2 cut(s) 167, 258
HpyCH4V TGCA 3 cut(s) 95, 454, 484
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 101, 490
Hsp92II CATG 3 cut(s) 344, 368, 373
Kzo9I GATC 3 cut(s) 8, 276, 375
LpnPI CCDG 4 cut(s) 165, 234, 316, 519
Lsp1109I GCAGC 2 cut(s) 39, 496
MaeI CTAG 4 cut(s) 227, 350, 468, 562
MaeIII GTNAC 2 cut(s) 76, 295
MalI GATC 3 cut(s) 10, 278, 377
MboI GATC 3 cut(s) 8, 276, 375
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 1 cut(s) 44
MlyI GAGTC 2 cut(s) 250, 317
MnlI CCTC 6 cut(s) 26, 272, 368, 528, 532, 544
MseI TTAA 3 cut(s) 72, 195, 386
Mva1269I GAATGC 1 cut(s) 222
MwoI GCNNNNNNNGC 3 cut(s) 92, 101, 490
NdeI CATATG 1 cut(s) 397
NdeII GATC 3 cut(s) 8, 276, 375
NlaIII CATG 3 cut(s) 344, 368, 373
NlaIV GGNNCC 1 cut(s) 356
NmuCI GTSAC 2 cut(s) 76, 295
PagI TCATGA 1 cut(s) 364
PctI GAATGC 1 cut(s) 222
PfeI GAWTC 2 cut(s) 271, 284
PkrI GCNGC 2 cut(s) 54, 486
PleI GAGTC 2 cut(s) 249, 317
PpsI GAGTC 2 cut(s) 249, 317
PspN4I GGNNCC 1 cut(s) 356
PspPI GGNCC 3 cut(s) 111, 464, 553
RsaI GTAC 3 cut(s) 260, 472, 504
RsaNI GTAC 3 cut(s) 259, 471, 503
SaqAI TTAA 3 cut(s) 72, 195, 386
SatI GCNGC 2 cut(s) 53, 485
Sau3AI GATC 3 cut(s) 8, 276, 375
Sau96I GGNCC 3 cut(s) 111, 464, 553
ScaI AGTACT 1 cut(s) 472
SchI GAGTC 2 cut(s) 250, 317
SduI GDGCHC 1 cut(s) 357
SetI ASST 7 cut(s) 106, 116, 189, 264, 360, 460, 520
SinI GGWCC 2 cut(s) 111, 464
Sse9I AATT 1 cut(s) 44
SsiI CCGC 1 cut(s) 346
SspMI CTAG 4 cut(s) 227, 350, 468, 562
StyI CCWWGG 2 cut(s) 114, 349
TaaI ACNGT 2 cut(s) 167, 258
TaqI TCGA 1 cut(s) 415
TaqII GACCGA 2 cut(s) 350, 452
TasI AATT 1 cut(s) 44
TatI WGTACW 1 cut(s) 470
TfiI GAWTC 2 cut(s) 271, 284
Tru1I TTAA 3 cut(s) 72, 195, 386
Tru9I TTAA 3 cut(s) 72, 195, 386
TscAI CASTG 3 cut(s) 170, 325, 456
TseFI GTSAC 2 cut(s) 76, 295
TseI GCWGC 2 cut(s) 52, 484
Tsp45I GTSAC 2 cut(s) 76, 295
TspDTI ATGAA 2 cut(s) 219, 321
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 3 cut(s) 170, 325, 456
VpaK11BI GGWCC 2 cut(s) 111, 464
XapI RAATTY 1 cut(s) 44
XbaI TCTAGA 1 cut(s) 226
XmaJI CCTAGG 1 cut(s) 349
XspI CTAG 4 cut(s) 227, 350, 468, 562
ZrmI AGTACT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.