RchiOBHm_Chr6g0295561

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
57544936 .. 57545832
897 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26524

Sequence Viewer

Length: 327 bp
ATGCGAGCAAAAGTGACATCCATTTCAAGTCTTGCAGACCTAATTGAAGGTTCTAGAAGAGCTCATATTCGATTACCAAGTGGTACTCAATTATCCATTCAAGAGGCATTATACTCCTCCAGATGTAGAAGGAATATGTTGAGTTTTAAAGATATACACTTGAATGGATACCACATAGAGACCACAAATGAGAATAATGTGGAATATCTTTGCATTAAGTCCAATACTTACAGCCAAAGGAGTATATTGAAAAGATTGGTTGCCCTTTCATTTGGTTTGTATTATACAACCATTAAGTTAATTGAGGCATACCATGTCGTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.4

Weight (kDa)

9.59

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 85
AgsI TTSAA 5 cut(s) 27, 47, 101, 163, 250
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 64
BciVI GTATCC 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 2 cut(s) 54, 325
BfuI GTATCC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 173
BseGI GGATG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 173
Bso31I GGTCTC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 64
BspQI GCTCTTC 1 cut(s) 52
BspTNI GGTCTC 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 6
BstF5I GGATG 1 cut(s) 17
BstMAI GTCTC 1 cut(s) 173
BsuI GTATCC 1 cut(s) 161
BtsCI GGATG 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 84
CviAII CATG 1 cut(s) 314
CviJI RGCY 2 cut(s) 62, 234
CviKI_1 RGCY 2 cut(s) 62, 234
CviQI GTAC 1 cut(s) 84
DraI TTTAAA 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 64
Eco31I GGTCTC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 62
EcoICRI GAGCTC 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 64
FaeI CATG 1 cut(s) 317
FaiI YATR 9 cut(s) 66, 112, 137, 155, 176, 245, 285, 310, 315
FatI CATG 1 cut(s) 313
FokI GGATG 1 cut(s) 4
FriOI GRGCYC 1 cut(s) 64
FspBI CTAG 2 cut(s) 54, 325
GsuI CTGGAG 1 cut(s) 103
Hin1II CATG 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 322
Hpy188III TCNNGA 3 cut(s) 54, 101, 120
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 2 cut(s) 41, 123
HpyCH4V TGCA 2 cut(s) 35, 213
Hsp92II CATG 1 cut(s) 317
LguI GCTCTTC 1 cut(s) 52
LpnPI CCDG 1 cut(s) 133
MaeI CTAG 2 cut(s) 54, 325
MaeIII GTNAC 1 cut(s) 13
MboII GAAGA 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 3 cut(s) 42, 89, 300
MnlI CCTC 3 cut(s) 97, 127, 298
MseI TTAA 4 cut(s) 147, 216, 294, 299
MslI CAYNNNNRTG 1 cut(s) 162
NlaIII CATG 1 cut(s) 317
NmuCI GTSAC 1 cut(s) 13
PciSI GCTCTTC 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 64
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 162
SacI GAGCTC 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 52
SaqAI TTAA 4 cut(s) 147, 216, 294, 299
SduI GDGCHC 1 cut(s) 64
SetI ASST 3 cut(s) 42, 52, 64
SgeI CNNG 8 cut(s) 17, 39, 44, 66, 90, 113, 132, 172
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 3 cut(s) 42, 89, 300
SspMI CTAG 2 cut(s) 54, 325
SstI GAGCTC 1 cut(s) 64
TaqI TCGA 1 cut(s) 70
TasI AATT 3 cut(s) 42, 89, 300
Tru1I TTAA 4 cut(s) 147, 216, 294, 299
Tru9I TTAA 4 cut(s) 147, 216, 294, 299
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 258
XbaI TCTAGA 1 cut(s) 53
XspI CTAG 2 cut(s) 54, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.