Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003941.1

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Reverse (-)

49160 .. 49495

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003941.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgagatatgcacagacatttaaagtcacagacgctctgtatgcaccaagagctaatggaaccttgttacgttttaaagatatttgtgccaatggttatcatgtagaaatacactgtgagaatggaactgagtacctttatattacctctaatgaatgtggaaggaaacgcattttagagaaacttatgagtcaatatagtggactgtacctcactactattcggatcattgaatcctatactatcaccaacaatgaaatgtgggacactgactcagacaggctttggcatgaccgcctagggcaccccggtcgtgacctgatgattcgtatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

111

Amino Acids

13.07

Weight (kDa)

6.89

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	303
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	1 cut(s)	233
AfaI	GTAC	2 cut(s)	134, 209
AgsI	TTSAA	1 cut(s)	233
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AlwI	GGATC	1 cut(s)	233
AspA2I	CCTAGG	1 cut(s)	298
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	238
AvrII	CCTAGG	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	303
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BcnI	CCSGG	1 cut(s)	309
BfaI	CTAG	1 cut(s)	299
BlnI	CCTAGG	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	309
BmiI	GGNNCC	2 cut(s)	61, 305
BmrFI	CCNGG	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	298, 307
BseDI	CCNNGG	2 cut(s)	298, 307
BseMII	CTCAG	2 cut(s)	120, 288
BseSI	GKGCMC	1 cut(s)	306
Bsh1285I	CGRYCG	1 cut(s)	313
BshNI	GGYRCC	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	309
BslFI	GGGAC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	295
BspCNI	CTCAG	2 cut(s)	121, 287
BspLI	GGNNCC	2 cut(s)	61, 305
BspPI	GGATC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	303
BssECI	CCNNGG	2 cut(s)	298, 307
BssMI	GATC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	298
Bst4CI	ACNGT	2 cut(s)	116, 207
BstDEI	CTNAG	2 cut(s)	129, 274
BstKTI	GATC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	225
BstMCI	CGRYCG	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 50
BstSCI	CCNGG	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	112, 267
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	133, 208
CviAII	CATG	2 cut(s)	101, 290
CviJI	RGCY	2 cut(s)	53, 283
CviKI_1	RGCY	2 cut(s)	53, 283
CviQI	GTAC	2 cut(s)	133, 208
DdeI	CTNAG	2 cut(s)	129, 274
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
DraI	TTTAAA	2 cut(s)	22, 76
Eco130I	CCWWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	2 cut(s)	104, 293
FaiI	YATR	8 cut(s)	9, 42, 102, 141, 188, 198, 240, 291
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	2 cut(s)	100, 289
FspBI	CTAG	1 cut(s)	299
HapII	CCGG	1 cut(s)	309
HgaI	GACGC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	104, 293
HinfI	GANTC	4 cut(s)	190, 233, 272, 325
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	2 cut(s)	225, 277
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	156
HpyCH4III	ACNGT	2 cut(s)	116, 207
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	11, 44
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 50
HpyF3I	CTNAG	2 cut(s)	129, 274
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	2 cut(s)	104, 293
Kzo9I	GATC	1 cut(s)	225
LpnPI	CCDG	3 cut(s)	265, 322, 332
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	3 cut(s)	25, 66, 314
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	306
MlyI	GAGTC	2 cut(s)	199, 266
MnlI	CCTC	2 cut(s)	157, 221
MseI	TTAA	3 cut(s)	21, 75, 334
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	41, 50
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	2 cut(s)	104, 293
NlaIV	GGNNCC	2 cut(s)	61, 305
NmuCI	GTSAC	2 cut(s)	25, 314
PfeI	GAWTC	2 cut(s)	233, 325
PleI	GAGTC	2 cut(s)	198, 266
PpsI	GAGTC	2 cut(s)	198, 266
PspN4I	GGNNCC	2 cut(s)	61, 305
RsaI	GTAC	2 cut(s)	134, 209
RsaNI	GTAC	2 cut(s)	133, 208
SaqAI	TTAA	3 cut(s)	21, 75, 334
Sau3AI	GATC	1 cut(s)	225
SchI	GAGTC	2 cut(s)	199, 266
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	7 cut(s)	55, 65, 73, 138, 149, 213, 321
SsiI	CCGC	1 cut(s)	295
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	2 cut(s)	116, 207
TaiI	ACGT	1 cut(s)	73
TfiI	GAWTC	2 cut(s)	233, 325
Tru1I	TTAA	3 cut(s)	21, 75, 334
Tru9I	TTAA	3 cut(s)	21, 75, 334
TscAI	CASTG	2 cut(s)	119, 274
TseFI	GTSAC	2 cut(s)	25, 314
Tsp45I	GTSAC	2 cut(s)	25, 314
TspDTI	ATGAA	2 cut(s)	168, 270
TspRI	CASTG	2 cut(s)	119, 274
XmaJI	CCTAGG	1 cut(s)	298
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.