Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000295.1

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Forward (+)

112261 .. 115426

Gene Structure 3166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000295.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atggttttctctggttttgaaggttctcgtctggcggcgccctcactctggcgttggtctttggccgagctgtggtgctggggttgctgccagacgggttatggttgttccccggtggtgtggagttcttgtaggagggttgtttgttcgtggtgtctctcttgtcagagtggcggcggcgattcttcggtttggcctcctgatttggttaaggcttggtctgcggtcatggctagagggagtgtcaaatctgggctgtggtggatcgtggggaagtgtgacgatgatcgtcggagcctagcggtggagaatggatggatccagcatgggtggaattatggcggcgagggtggattggttcagggtccagtgcggcttagatttggtagagggggtttgatcaccgaccatccaattgaaggatgggggttgtctactcggcggcgagatgtggttcatggaggcggtcctgcagacctgattgaaggctccggaagagcccacattaggctacccaatggaactcaattgtccattcaagaggctttatattcttcgagatccagaagaaatctcctcagttttagagatatccgtttaaatggataccacattgagaccacgaatgataatcatgtggaatatctttgcattacatccaataaaaactgccaaaagtatatattggaaaaattggttgccttatcatctgggttgtattacacaaccattcaaccaattgaggcataccatgttgtgaaccagcagttcaaaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

259

Amino Acids

28.87

Weight (kDa)

8.78

Isoelectric Point (pI)

58.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	434
AccIII	TCCGGA	1 cut(s)	491
AciI	CCGC	9 cut(s)	35, 174, 177, 224, 302, 342, 373, 442, 465
AclWI	GGATC	4 cut(s)	272, 313, 326, 555
AcoI	YGGCCR	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	38
AfiI	CCNNNNNNNGG	5 cut(s)	48, 72, 304, 419, 507
AgsI	TTSAA	6 cut(s)	20, 419, 485, 539, 734, 772
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	2 cut(s)	161, 611
AlwI	GGATC	4 cut(s)	272, 313, 326, 555
Aor13HI	TCCGGA	1 cut(s)	491
AoxI	GGCC	2 cut(s)	63, 194
ApeKI	GCWGC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	365, 467
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	394
AvaII	GGWCC	2 cut(s)	365, 467
BamHI	GGATCC	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	502
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	3 cut(s)	309, 417, 417
BciVI	GTATCC	1 cut(s)	599
BclI	TGATCA	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	161, 611
BfaI	CTAG	2 cut(s)	234, 299
BfmI	CTRYAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	41
BfuI	GTATCC	1 cut(s)	599
BisI	GCNGC	7 cut(s)	36, 88, 175, 178, 343, 374, 443
BlsI	GCNGC	7 cut(s)	37, 89, 176, 179, 344, 375, 444
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	2 cut(s)	365, 467
BmgT120I	GGNCC	2 cut(s)	365, 467
BmiI	GGNNCC	5 cut(s)	39, 296, 320, 366, 490
BmrFI	CCNGG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	611
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	5 cut(s)	48, 72, 304, 419, 507
Bse1I	ACTGG	1 cut(s)	368
BseAI	TCCGGA	1 cut(s)	491
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	4 cut(s)	320, 409, 428, 656
BseLI	CCNNNNNNNGG	5 cut(s)	48, 72, 304, 419, 507
BseMII	CTCAG	1 cut(s)	592
BseNI	ACTGG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	566
BseXI	GCAGC	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	78
BshFI	GGCC	2 cut(s)	65, 196
BshNI	GGYRCC	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	113, 492
BslI	CCNNNNNNNGG	5 cut(s)	48, 72, 304, 419, 507
BsmAI	GTCTC	2 cut(s)	161, 611
BsnI	GGCC	2 cut(s)	65, 196
Bso31I	GGTCTC	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp13I	TCCGGA	1 cut(s)	491
Bsp143I	GATC	5 cut(s)	264, 286, 318, 399, 560
BspACI	CCGC	9 cut(s)	35, 174, 177, 224, 302, 342, 373, 442, 465
BspANI	GGCC	2 cut(s)	65, 196
BspCNI	CTCAG	1 cut(s)	591
BspEI	TCCGGA	1 cut(s)	491
BspLI	GGNNCC	5 cut(s)	39, 296, 320, 366, 490
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	4 cut(s)	272, 313, 326, 555
BspQI	GCTCTTC	1 cut(s)	490
BspT107I	GGYRCC	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	611
BsrI	ACTGG	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	5 cut(s)	264, 286, 318, 399, 560
BssNI	GRCGYC	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	490
BstACI	GRCGYC	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	377, 578
BstF5I	GGATG	4 cut(s)	320, 409, 428, 656
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	5 cut(s)	267, 289, 321, 402, 563
BstMAI	GTCTC	2 cut(s)	161, 611
BstMBI	GATC	5 cut(s)	264, 286, 318, 399, 560
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 221, 230
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	2 cut(s)	318, 560
BstYI	RGATCY	2 cut(s)	318, 560
BsuI	GTATCC	1 cut(s)	599
BsuRI	GGCC	2 cut(s)	65, 196
BtsCI	GGATG	4 cut(s)	320, 409, 428, 656
BtsIMutI	CAGTG	1 cut(s)	375
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	365, 467
CviAII	CATG	5 cut(s)	229, 326, 458, 635, 752
DdeI	CTNAG	2 cut(s)	377, 578
DinI	GGCGCC	1 cut(s)	39
DpnI	GATC	5 cut(s)	266, 288, 320, 401, 562
DpnII	GATC	5 cut(s)	264, 286, 318, 399, 560
DraI	TTTAAA	1 cut(s)	600
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	490
Eco24I	GRGCYC	1 cut(s)	502
Eco31I	GGTCTC	1 cut(s)	611
Eco32I	GATATC	1 cut(s)	592
Eco47I	GGWCC	2 cut(s)	365, 467
EcoRV	GATATC	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	502
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
FaeI	CATG	5 cut(s)	232, 329, 461, 638, 755
FatI	CATG	5 cut(s)	228, 325, 457, 634, 751
FbaI	TGATCA	1 cut(s)	399
FblI	GTMKAC	1 cut(s)	434
Fnu4HI	GCNGC	7 cut(s)	36, 88, 175, 178, 343, 374, 443
FokI	GGATG	4 cut(s)	327, 396, 435, 643
FriOI	GRGCYC	1 cut(s)	502
Fsp4HI	GCNGC	7 cut(s)	36, 88, 175, 178, 343, 374, 443
FspBI	CTAG	2 cut(s)	234, 299
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	7 cut(s)	36, 88, 175, 178, 343, 374, 443
GsaI	CCCAGC	1 cut(s)	82
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	65, 196
HapII	CCGG	2 cut(s)	113, 492
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	5 cut(s)	232, 329, 461, 638, 755
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	2 cut(s)	113, 492
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	2 cut(s)	435, 760
Hpy188I	TCNGA	2 cut(s)	168, 294
Hpy188III	TCNNGA	5 cut(s)	200, 492, 539, 558, 564
Hpy8I	GTNNAC	2 cut(s)	435, 760
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	3 cut(s)	14, 413, 479
HpyCH4V	TGCA	2 cut(s)	473, 651
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 221, 230
HpyF3I	CTNAG	2 cut(s)	377, 578
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	5 cut(s)	232, 329, 461, 638, 755
HspAI	GCGC	1 cut(s)	38
KasI	GGCGCC	1 cut(s)	37
Kpn2I	TCCGGA	1 cut(s)	491
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	5 cut(s)	264, 286, 318, 399, 560
LguI	GCTCTTC	1 cut(s)	490
LmnI	GCTCC	2 cut(s)	294, 494
Lsp1109I	GCAGC	1 cut(s)	74
MaeI	CTAG	2 cut(s)	234, 299
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	5 cut(s)	266, 288, 320, 401, 562
MboI	GATC	5 cut(s)	264, 286, 318, 399, 560
MboII	GAAGA	4 cut(s)	177, 507, 546, 579
MfeI	CAATTG	3 cut(s)	414, 527, 738
MflI	RGATCY	2 cut(s)	318, 560
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	6 cut(s)	334, 414, 527, 692, 738, 775
Mly113I	GGCGCC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	272
MroI	TCCGGA	1 cut(s)	491
MseI	TTAA	3 cut(s)	210, 599, 778
MspI	CCGG	2 cut(s)	113, 492
MspR9I	CCNGG	1 cut(s)	113
MunI	CAATTG	3 cut(s)	414, 527, 738
MwoI	GCNNNNNNNGC	3 cut(s)	84, 221, 230
NarI	GGCGCC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	5 cut(s)	264, 286, 318, 399, 560
NlaIII	CATG	5 cut(s)	232, 329, 461, 638, 755
NlaIV	GGNNCC	5 cut(s)	39, 296, 320, 366, 490
NmeAIII	GCCGAG	2 cut(s)	91, 418
NmuCI	GTSAC	1 cut(s)	278
PciSI	GCTCTTC	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	7 cut(s)	37, 89, 176, 179, 344, 375, 444
PluTI	GGCGCC	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	78
PspN4I	GGNNCC	5 cut(s)	39, 296, 320, 366, 490
PspPI	GGNCC	2 cut(s)	365, 467
PstI	CTGCAG	1 cut(s)	475
PsuI	RGATCY	2 cut(s)	318, 560
SapI	GCTCTTC	1 cut(s)	490
SaqAI	TTAA	3 cut(s)	210, 599, 778
SatI	GCNGC	7 cut(s)	36, 88, 175, 178, 343, 374, 443
Sau3AI	GATC	5 cut(s)	264, 286, 318, 399, 560
Sau96I	GGNCC	2 cut(s)	365, 467
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	3 cut(s)	25, 72, 480
SfcI	CTRYAG	1 cut(s)	471
SfoI	GGCGCC	1 cut(s)	39
SinI	GGWCC	2 cut(s)	365, 467
Sse9I	AATT	6 cut(s)	334, 414, 527, 692, 738, 775
SsiI	CCGC	9 cut(s)	35, 174, 177, 224, 302, 342, 373, 442, 465
SspDI	GGCGCC	1 cut(s)	37
SspMI	CTAG	2 cut(s)	234, 299
StyD4I	CCNGG	1 cut(s)	111
TaqI	TCGA	1 cut(s)	557
TasI	AATT	6 cut(s)	334, 414, 527, 692, 738, 775
TauI	GCSGC	6 cut(s)	38, 177, 180, 345, 376, 445
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	3 cut(s)	210, 599, 778
Tru9I	TTAA	3 cut(s)	210, 599, 778
TscAI	CASTG	1 cut(s)	375
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	1 cut(s)	87
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	446
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	1 cut(s)	375
VpaK11BI	GGWCC	2 cut(s)	365, 467
XcmI	CCANNNNNNNNNTGG	2 cut(s)	98, 420
XmiI	GTMKAC	1 cut(s)	434
XspI	CTAG	2 cut(s)	234, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.