Rmu_sc0003522.1_g000052

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003522.1
Physical Location & Seq
Forward (+)
207975 .. 208472
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003522.1_g000052.1.cds

Sequence Viewer

Length: 498 bp
atgattggattatcaaaactaataaaatggcgaggaactgccaaatttttgctgcctaatggcgcaacatttcaagtcacagacgctctatatgcaccaagagctaatcgaaccttgttaatgtttcaaagctatttgtgcaacgattatccagtaaaaatacaccgtgagaatggaactgaataccttgatattacatctaatgactgtggaaggaaacacatcttagagaaacttatgagtcaatttagtggactgtacctcactacgattcggatcattgaatcctatactgtcactaacaatgaaatgtgggacattgactcatacaggcttttgcatgaccgcctatggcaccgaggtcgtgacatgatgatccgtatttttaaaagaactcacacggacatcccttctttcgagtcaaaaatgggagaaaaatccgccacactgcaagatgtcggttctaggattgctcaaatccagtcattgcttttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

165

Amino Acids

19.26

Weight (kDa)

9.3

Isoelectric Point (pI)

35.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 354
AciI CCGC 2 cut(s) 346, 441
AclWI GGATC 2 cut(s) 284, 370
AcsI RAATTY 1 cut(s) 44
AfaI GTAC 1 cut(s) 260
AgsI TTSAA 3 cut(s) 74, 128, 284
AluBI AGCT 2 cut(s) 104, 132
AluI AGCT 2 cut(s) 104, 132
AlwI GGATC 2 cut(s) 284, 370
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 44
AspLEI GCGC 1 cut(s) 65
BanI GGYRCC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 39
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BfaI CTAG 1 cut(s) 465
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 356
BsaBI GATNNNNATC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 358
Bse1I ACTGG 2 cut(s) 152, 481
Bse3DI GCAATG 1 cut(s) 485
Bse8I GATNNNNATC 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 1 cut(s) 405
BseJI GATNNNNATC 1 cut(s) 275
BseMI GCAATG 1 cut(s) 485
BseNI ACTGG 2 cut(s) 152, 481
BseXI GCAGC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 354
BslFI GGGAC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 329
Bsp143I GATC 2 cut(s) 276, 375
BspACI CCGC 2 cut(s) 346, 441
BspLI GGNNCC 1 cut(s) 356
BspPI GGATC 2 cut(s) 284, 370
BspT107I GGYRCC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 485
BsrI ACTGG 2 cut(s) 152, 481
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 2 cut(s) 276, 375
Bst4CI ACNGT 4 cut(s) 167, 209, 258, 295
BstDEI CTNAG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 405
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 279, 378
BstMBI GATC 2 cut(s) 276, 375
BstMWI GCNNNNNNNGC 3 cut(s) 92, 101, 138
BstV1I GCAGC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 405
BtsI GCAGTG 1 cut(s) 446
BtsIMutI CAGTG 1 cut(s) 446
CfoI GCGC 1 cut(s) 65
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 341, 370
CviJI RGCY 3 cut(s) 104, 132, 334
CviKI_1 RGCY 3 cut(s) 104, 132, 334
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 1 cut(s) 226
DpnI GATC 2 cut(s) 278, 377
DpnII GATC 2 cut(s) 276, 375
DraI TTTAAA 1 cut(s) 388
EciI GGCGGA 1 cut(s) 430
FaeI CATG 2 cut(s) 344, 373
FaiI YATR 8 cut(s) 91, 93, 239, 291, 328, 342, 352, 371
FaqI GGGAC 1 cut(s) 329
FatI CATG 2 cut(s) 340, 369
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 1 cut(s) 465
GlaI GCGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 53
HgaI GACGC 1 cut(s) 92
HhaI GCGC 1 cut(s) 65
Hin1II CATG 2 cut(s) 344, 373
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 5 cut(s) 241, 271, 284, 323, 419
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 2 cut(s) 276, 497
Hpy188III TCNNGA 1 cut(s) 365
Hpy8I GTNNAC 1 cut(s) 254
HpyAV CCTTC 2 cut(s) 207, 420
HpyCH4III ACNGT 4 cut(s) 167, 209, 258, 295
HpyCH4V TGCA 4 cut(s) 95, 141, 340, 451
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 101, 138
HpyF3I CTNAG 1 cut(s) 226
Hsp92II CATG 2 cut(s) 344, 373
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 276, 375
LpnPI CCDG 3 cut(s) 165, 316, 494
Lsp1109I GCAGC 1 cut(s) 39
MaeI CTAG 1 cut(s) 465
MaeIII GTNAC 3 cut(s) 76, 295, 365
MalI GATC 2 cut(s) 278, 377
MboI GATC 2 cut(s) 276, 375
MluCI AATT 2 cut(s) 44, 245
MlyI GAGTC 3 cut(s) 250, 317, 428
MnlI CCTC 3 cut(s) 26, 272, 353
MseI TTAA 2 cut(s) 119, 387
MwoI GCNNNNNNNGC 3 cut(s) 92, 101, 138
NdeII GATC 2 cut(s) 276, 375
NlaIII CATG 2 cut(s) 344, 373
NlaIV GGNNCC 1 cut(s) 356
NmuCI GTSAC 3 cut(s) 76, 295, 365
PfeI GAWTC 2 cut(s) 271, 284
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 3 cut(s) 249, 317, 427
PpsI GAGTC 3 cut(s) 249, 317, 427
PspN4I GGNNCC 1 cut(s) 356
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SaqAI TTAA 2 cut(s) 119, 387
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 2 cut(s) 276, 375
SchI GAGTC 3 cut(s) 250, 317, 428
SetI ASST 6 cut(s) 106, 116, 134, 189, 264, 364
Sse9I AATT 2 cut(s) 44, 245
SsiI CCGC 2 cut(s) 346, 441
SspMI CTAG 1 cut(s) 465
TaaI ACNGT 4 cut(s) 167, 209, 258, 295
TaqI TCGA 2 cut(s) 109, 417
TasI AATT 2 cut(s) 44, 245
TfiI GAWTC 2 cut(s) 271, 284
Tru1I TTAA 2 cut(s) 119, 387
Tru9I TTAA 2 cut(s) 119, 387
TscAI CASTG 1 cut(s) 453
TseFI GTSAC 3 cut(s) 76, 295, 365
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 3 cut(s) 76, 295, 365
TspDTI ATGAA 1 cut(s) 321
TspGWI ACGGA 2 cut(s) 368, 416
TspRI CASTG 1 cut(s) 453
XapI RAATTY 1 cut(s) 44
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.