Rmu_sc0000161.1_g000059

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000161.1
Physical Location & Seq
Forward (+)
241315 .. 241647
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000161.1_g000059.1.cds

Sequence Viewer

Length: 333 bp
atggatgaactacaatgtcttgtgaatagtgcgactacgcacaccattctacgacataggcaattattcttagagatgttgtctatatattcctctgtgactacgatggctgggccatcaggtttagttcaaggacatggaatggcccaattcctattgccaaatggcaccttgattaaagtcactgaagctctctacgctcctaaggaaaatcgaaccttattgaggtttaaagatattagagccaacggattccatgcggaaacgcataatgagaacggaaaggagtcctttgcattacctctaatgattgcggacgaaagcgcatcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

12.16

Weight (kDa)

6.17

Isoelectric Point (pI)

30.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AciI CCGC 2 cut(s) 260, 314
AcuI CTGAAG 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
AoxI GGCC 2 cut(s) 113, 144
AspLEI GCGC 1 cut(s) 326
AspS9I GGNCC 2 cut(s) 113, 145
AxyI CCTNAGG 1 cut(s) 204
BanI GGYRCC 1 cut(s) 167
BccI CCATC 2 cut(s) 100, 124
BmgT120I GGNCC 2 cut(s) 113, 145
BmiI GGNNCC 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse21I CCTNAGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 225
BseYI CCCAGC 1 cut(s) 110
BshFI GGCC 2 cut(s) 115, 146
BshNI GGYRCC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 225
BsnI GGCC 2 cut(s) 115, 146
BspACI CCGC 2 cut(s) 260, 314
BspANI GGCC 2 cut(s) 115, 146
BspLI GGNNCC 1 cut(s) 169
BspT107I GGYRCC 1 cut(s) 167
BstDEI CTNAG 3 cut(s) 70, 204, 330
BstENI CCTNNNNNAGG 1 cut(s) 223
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 326
BstMWI GCNNNNNNNGC 1 cut(s) 197
Bsu36I CCTNAGG 1 cut(s) 204
BsuRI GGCC 2 cut(s) 115, 146
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 183
CfoI GCGC 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 113, 145
CviAII CATG 2 cut(s) 137, 257
CviJI RGCY 5 cut(s) 110, 115, 146, 191, 245
CviKI_1 RGCY 5 cut(s) 110, 115, 146, 191, 245
DdeI CTNAG 3 cut(s) 70, 204, 330
DraI TTTAAA 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 207
Eco81I CCTNAGG 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 223
FaeI CATG 2 cut(s) 140, 260
FaiI YATR 6 cut(s) 57, 86, 88, 138, 258, 270
FalI AAGNNNNNCTT 3 cut(s) 275, 307, 313
FatI CATG 2 cut(s) 136, 256
FokI GGATG 1 cut(s) 17
GlaI GCGC 1 cut(s) 325
GsaI CCCAGC 1 cut(s) 114
HaeIII GGCC 2 cut(s) 115, 146
HhaI GCGC 1 cut(s) 326
Hin1II CATG 2 cut(s) 140, 260
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HinfI GANTC 2 cut(s) 252, 287
HpyCH4V TGCA 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 3 cut(s) 70, 204, 330
Hsp92II CATG 2 cut(s) 140, 260
HspAI GCGC 1 cut(s) 324
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 2 cut(s) 96, 105
MaeIII GTNAC 2 cut(s) 97, 181
MluCI AATT 2 cut(s) 62, 149
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 3 cut(s) 103, 219, 312
MseI TTAA 2 cut(s) 177, 231
MwoI GCNNNNNNNGC 1 cut(s) 197
NlaIII CATG 2 cut(s) 140, 260
NlaIV GGNNCC 1 cut(s) 169
NmuCI GTSAC 2 cut(s) 97, 181
PfeI GAWTC 1 cut(s) 252
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PspFI CCCAGC 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 2 cut(s) 113, 145
SaqAI TTAA 2 cut(s) 177, 231
Sau96I GGNCC 2 cut(s) 113, 145
SchI GAGTC 1 cut(s) 296
SetI ASST 6 cut(s) 124, 173, 193, 221, 230, 304
SgeI CNNG 7 cut(s) 32, 123, 132, 143, 149, 184, 269
Sse9I AATT 2 cut(s) 62, 149
SsiI CCGC 2 cut(s) 260, 314
TaqI TCGA 1 cut(s) 214
TasI AATT 2 cut(s) 62, 149
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 2 cut(s) 177, 231
Tru9I TTAA 2 cut(s) 177, 231
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 2 cut(s) 97, 181
Tsp45I GTSAC 2 cut(s) 97, 181
TspDTI ATGAA 1 cut(s) 21
TspGWI ACGGA 2 cut(s) 264, 294
TspRI CASTG 1 cut(s) 190
XagI CCTNNNNNAGG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.