Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001913.1

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Forward (+)

139176 .. 142475

Gene Structure 3300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001913.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgatcttcggtctcaactccggctccaccgtcaaacacaccgtggatcgcttgggcgagcttttacaaccgggaaaagttcacaacatcatcggaatttcagagaacacccaccaacaagtcatctctcttagaatttcatcatccaacctcgatgactactcgatcctcgatctcgctatcgacggtgccgacgaggtggatccccacctcaacctagtcaaaggccgttgcgggttagaaattcgtgctgggttcaagaacatgaacgaatcaaggattgctgacattttcttcttttgctttttagccgggttcaagaacataaatatgatgaatttctgggttcaagtgttgcaatctaacctaattgaaggcttcggaagagcccatattcggttgccaagtggtactcaattatctattcaagaggcattatactcctccagatctagaaggaatctgttgagttttaaagatatacgcttaaatgggtaccacatagaaaccacaaatgagaataatatggaatatctttgcattacttccaatacttacagccaaaggcgtatattggaaaatttgcgatttccggataccgtagcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

202

Amino Acids

22.91

Weight (kDa)

6.59

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	495
AccB1I	GGYRCC	2 cut(s)	188, 495
AccIII	TCCGGA	1 cut(s)	592
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	4 cut(s)	54, 160, 197, 210
AcsI	RAATTY	5 cut(s)	96, 135, 243, 337, 580
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	2 cut(s)	412, 497
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	5 cut(s)	259, 319, 350, 374, 428
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	4 cut(s)	54, 160, 197, 210
Aor13HI	TCCGGA	1 cut(s)	592
AoxI	GGCC	1 cut(s)	226
ApoI	RAATTY	5 cut(s)	96, 135, 243, 337, 580
Asp718I	GGTACC	1 cut(s)	495
AsuC2I	CCSGG	2 cut(s)	72, 313
BamHI	GGATCC	1 cut(s)	202
BanI	GGYRCC	2 cut(s)	188, 495
BanII	GRGCYC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	589
BcnI	CCSGG	2 cut(s)	72, 313
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	2 cut(s)	218, 453
BfuI	GTATCC	1 cut(s)	589
BglII	AGATCT	1 cut(s)	449
Bme1390I	CCNGG	2 cut(s)	72, 313
BmiI	GGNNCC	4 cut(s)	25, 190, 204, 497
BmrFI	CCNGG	2 cut(s)	72, 313
BpmI	CTGGAG	1 cut(s)	430
BpuMI	CCSGG	2 cut(s)	72, 313
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	592
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
BseAI	TCCGGA	1 cut(s)	592
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseRI	GAGGAG	1 cut(s)	433
BseYI	CCCAGC	1 cut(s)	251
BshFI	GGCC	1 cut(s)	228
BshNI	GGYRCC	2 cut(s)	188, 495
BsiSI	CCGG	4 cut(s)	21, 71, 312, 593
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	228
Bso31I	GGTCTC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp13I	TCCGGA	1 cut(s)	592
Bsp143I	GATC	6 cut(s)	3, 46, 165, 172, 202, 449
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	1 cut(s)	228
BspEI	TCCGGA	1 cut(s)	592
BspLI	GGNNCC	4 cut(s)	25, 190, 204, 497
BspPI	GGATC	4 cut(s)	54, 160, 197, 210
BspQI	GCTCTTC	1 cut(s)	379
BspT107I	GGYRCC	2 cut(s)	188, 495
BspTNI	GGTCTC	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	6 cut(s)	3, 46, 165, 172, 202, 449
Bst4CI	ACNGT	4 cut(s)	31, 43, 188, 601
Bst6I	CTCTTC	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	131
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	143
BstKTI	GATC	6 cut(s)	6, 49, 168, 175, 205, 452
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	6 cut(s)	3, 46, 165, 172, 202, 449
BstSCI	CCNGG	2 cut(s)	70, 311
BstX2I	RGATCY	2 cut(s)	202, 449
BstYI	RGATCY	2 cut(s)	202, 449
BsuI	GTATCC	1 cut(s)	589
BsuRI	GGCC	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	411, 496
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	7 cut(s)	24, 61, 228, 311, 378, 389, 561
CviKI_1	RGCY	7 cut(s)	24, 61, 228, 311, 378, 389, 561
CviQI	GTAC	2 cut(s)	411, 496
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	6 cut(s)	5, 48, 167, 174, 204, 451
DpnII	GATC	6 cut(s)	3, 46, 165, 172, 202, 449
DraI	TTTAAA	1 cut(s)	475
DraIII	CACNNNGTG	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	391
Eco31I	GGTCTC	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	391
FaeI	CATG	1 cut(s)	268
FaiI	YATR	9 cut(s)	266, 326, 332, 393, 439, 482, 503, 527, 572
FatI	CATG	1 cut(s)	264
FauI	CCCGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	130
FriOI	GRGCYC	1 cut(s)	391
FspBI	CTAG	2 cut(s)	218, 453
GsaI	CCCAGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	4 cut(s)	21, 71, 312, 593
Hin1II	CATG	1 cut(s)	268
HinfI	GANTC	2 cut(s)	272, 460
HpaII	CCGG	4 cut(s)	21, 71, 312, 593
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	95, 103, 383
Hpy188III	TCNNGA	6 cut(s)	259, 319, 428, 447, 453, 593
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	2 cut(s)	188, 197
HpyAV	CCTTC	2 cut(s)	368, 450
HpyCH4III	ACNGT	4 cut(s)	31, 43, 188, 601
HpyCH4V	TGCA	2 cut(s)	358, 540
HpyF3I	CTNAG	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	268
Kpn2I	TCCGGA	1 cut(s)	592
KpnI	GGTACC	1 cut(s)	499
Kzo9I	GATC	6 cut(s)	3, 46, 165, 172, 202, 449
LguI	GCTCTTC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	6 cut(s)	34, 84, 237, 325, 328, 460
MaeI	CTAG	2 cut(s)	218, 453
MalI	GATC	6 cut(s)	5, 48, 167, 174, 204, 451
MboI	GATC	6 cut(s)	3, 46, 165, 172, 202, 449
MboII	GAAGA	2 cut(s)	286, 396
MflI	RGATCY	2 cut(s)	202, 449
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	7 cut(s)	96, 135, 243, 337, 369, 416, 580
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	6 cut(s)	161, 179, 190, 221, 424, 454
MroI	TCCGGA	1 cut(s)	592
MseI	TTAA	2 cut(s)	474, 488
MslI	CAYNNNNRTG	1 cut(s)	329
MspI	CCGG	4 cut(s)	21, 71, 312, 593
MspR9I	CCNGG	2 cut(s)	72, 313
NciI	CCSGG	2 cut(s)	72, 313
NdeII	GATC	6 cut(s)	3, 46, 165, 172, 202, 449
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	4 cut(s)	25, 190, 204, 497
PciSI	GCTCTTC	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 192
PfeI	GAWTC	2 cut(s)	272, 460
PspFI	CCCAGC	1 cut(s)	251
PspN4I	GGNNCC	4 cut(s)	25, 190, 204, 497
PsuI	RGATCY	2 cut(s)	202, 449
RsaI	GTAC	2 cut(s)	412, 497
RsaNI	GTAC	2 cut(s)	411, 496
RseI	CAYNNNNRTG	1 cut(s)	329
SapI	GCTCTTC	1 cut(s)	379
SaqAI	TTAA	2 cut(s)	474, 488
Sau3AI	GATC	6 cut(s)	3, 46, 165, 172, 202, 449
ScrFI	CCNGG	2 cut(s)	72, 313
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	6 cut(s)	63, 153, 201, 213, 219, 369
SmiMI	CAYNNNNRTG	1 cut(s)	329
Sse9I	AATT	7 cut(s)	96, 135, 243, 337, 369, 416, 580
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	2 cut(s)	218, 453
StyD4I	CCNGG	2 cut(s)	70, 311
TaaI	ACNGT	4 cut(s)	31, 43, 188, 601
TaqI	TCGA	4 cut(s)	153, 164, 171, 183
TasI	AATT	7 cut(s)	96, 135, 243, 337, 369, 416, 580
TfiI	GAWTC	2 cut(s)	272, 460
Tru1I	TTAA	2 cut(s)	474, 488
Tru9I	TTAA	2 cut(s)	474, 488
TspDTI	ATGAA	3 cut(s)	129, 281, 350
XapI	RAATTY	5 cut(s)	96, 135, 243, 337, 580
XbaI	TCTAGA	1 cut(s)	452
XspI	CTAG	2 cut(s)	218, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.