Rmu_sc0000315.1_g000062

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000315.1
OG0002041
Physical Location & Seq
Reverse (-)
263290 .. 263676
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000315.1_g000062.1.cds

Sequence Viewer

Length: 387 bp
atgattggatcatcacaagtaataaaagtgcgaggaattgccaaatttttgctgcctaatggcacaacatttcaagtcacagacgctctatatgcaccaagagctaatcgaaccttgttaagtttcagagatatttgtgccaacggttatccagtagaaacacattgtgagaatgaaactgaataccttgatattaactctaatgaatgtggaaggaaacgcattttagagaaacttatgagccaatctagtggactgtacctcactacgattcgaatcattgaatcctatgctgtcaccaacaatgaaatgtggaacattgactcatacaggctttggcatgaccgcctagggcacccctgtcatgacatgataatccgtatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 rve

Protein Analysis

128

Amino Acids

14.74

Weight (kDa)

6.89

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 354
AciI CCGC 1 cut(s) 346
AclWI GGATC 1 cut(s) 16
AcsI RAATTY 1 cut(s) 44
AdeI CACNNNGTG 1 cut(s) 167
AfaI GTAC 1 cut(s) 260
AgsI TTSAA 2 cut(s) 74, 284
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
AlwI GGATC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 44
AspA2I CCTAGG 1 cut(s) 349
AsuHPI GGTGA 1 cut(s) 289
AsuII TTCGAA 1 cut(s) 274
AvrII CCTAGG 1 cut(s) 349
BaeGI GKGCMC 1 cut(s) 357
BanI GGYRCC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 39
BfaI CTAG 2 cut(s) 249, 350
BisI GCNGC 1 cut(s) 53
BlnI CCTAGG 1 cut(s) 349
BlsI GCNGC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 356
Bpu14I TTCGAA 1 cut(s) 274
BsaBI GATNNNNATC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 152
Bse8I GATNNNNATC 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 349
BseJI GATNNNNATC 1 cut(s) 275
BseNI ACTGG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 354
Bsp119I TTCGAA 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 1 cut(s) 8
BspACI CCGC 1 cut(s) 346
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 356
BspPI GGATC 1 cut(s) 16
BspT104I TTCGAA 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 354
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 1 cut(s) 8
BssT1I CCWWGG 1 cut(s) 349
Bst4CI ACNGT 2 cut(s) 146, 258
BstBI TTCGAA 1 cut(s) 274
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 2 cut(s) 92, 101
BstSLI GKGCMC 1 cut(s) 357
BstV1I GCAGC 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 251
CciI TCATGA 1 cut(s) 364
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 259
CviAII CATG 3 cut(s) 341, 365, 370
CviJI RGCY 3 cut(s) 104, 243, 334
CviKI_1 RGCY 3 cut(s) 104, 243, 334
CviQI GTAC 1 cut(s) 259
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
DraIII CACNNNGTG 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 3 cut(s) 344, 368, 373
FaiI YATR 8 cut(s) 91, 93, 239, 291, 328, 342, 366, 371
FatI CATG 3 cut(s) 340, 364, 369
Fnu4HI GCNGC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 2 cut(s) 249, 350
GluI GCNGC 1 cut(s) 53
HgaI GACGC 1 cut(s) 92
Hin1II CATG 3 cut(s) 344, 368, 373
HinfI GANTC 4 cut(s) 271, 276, 284, 323
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 365
Hpy8I GTNNAC 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 2 cut(s) 146, 258
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 101
Hsp92II CATG 3 cut(s) 344, 368, 373
Kzo9I GATC 1 cut(s) 8
LpnPI CCDG 3 cut(s) 165, 316, 373
Lsp1109I GCAGC 1 cut(s) 39
MaeI CTAG 2 cut(s) 249, 350
MaeIII GTNAC 2 cut(s) 76, 295
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 2 cut(s) 36, 44
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 2 cut(s) 26, 272
MseI TTAA 3 cut(s) 119, 195, 385
MwoI GCNNNNNNNGC 2 cut(s) 92, 101
NdeII GATC 1 cut(s) 8
NlaIII CATG 3 cut(s) 344, 368, 373
NlaIV GGNNCC 1 cut(s) 356
NmuCI GTSAC 2 cut(s) 76, 295
NspV TTCGAA 1 cut(s) 274
PagI TCATGA 1 cut(s) 364
PfeI GAWTC 3 cut(s) 271, 276, 284
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 356
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SaqAI TTAA 3 cut(s) 119, 195, 385
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 1 cut(s) 8
SchI GAGTC 1 cut(s) 317
SduI GDGCHC 1 cut(s) 357
SetI ASST 4 cut(s) 106, 116, 189, 264
SfuI TTCGAA 1 cut(s) 274
Sse9I AATT 2 cut(s) 36, 44
SsiI CCGC 1 cut(s) 346
SspMI CTAG 2 cut(s) 249, 350
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 2 cut(s) 146, 258
TaqI TCGA 2 cut(s) 109, 274
TasI AATT 2 cut(s) 36, 44
TfiI GAWTC 3 cut(s) 271, 276, 284
Tru1I TTAA 3 cut(s) 119, 195, 385
Tru9I TTAA 3 cut(s) 119, 195, 385
TseFI GTSAC 2 cut(s) 76, 295
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 2 cut(s) 76, 295
TspDTI ATGAA 3 cut(s) 189, 219, 321
TspGWI ACGGA 1 cut(s) 368
XapI RAATTY 1 cut(s) 44
XmaJI CCTAGG 1 cut(s) 349
XspI CTAG 2 cut(s) 249, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.