Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006382.1

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Reverse (-)

154008 .. 154978

Gene Structure 971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006382.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggatgaacttcaatgtcttgcggatagtgcgactacgcacaccattctacgacataggcaattattcttagatatgttgcctacatattcctctgtgactacgatggctgggccatcaagtttagttcaaggacatggaatggccaaattccttttgcccaatggcaccttgattaaagtcactgaagctctctacgctcctaaggcaaatcgaaccttattaaggtttaaagatataagagccaacggattccatgcggaaacacatagtgaaaatggaatagaattcctttgcattacctctaatgattgcggacgaaagtgcatcttagagaagcttatcttctggtactgctgctgtcttgggccgccgaaaggctgccctgtccctagtgatgacgccataaatggcgccaaccatgagcatgacgccatggttgctcctcctagtggccatgacgccacacaaacttatttccatggccctaactccataatgggagatgtagtcacacactttgcttctaatagcgctactgacgctccggcccaaccaaaatcctcattggttgcttctaaggcccctcgctcatttttcaaagcctgttccttcgggaaattaggaacgagaccgtcctatgcaaaggatcctaaaatactcattccgttcttacagagaatccaaggagatatctgtggaccaattcaaccatcatgtagacctttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 rve

Protein Analysis

243

Amino Acids

26.41

Weight (kDa)

8.28

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	167, 413
AccI	GTMKAC	1 cut(s)	721
AciI	CCGC	4 cut(s)	23, 260, 315, 371
AclWI	GGATC	2 cut(s)	644, 657
AcoI	YGGCCR	2 cut(s)	144, 454
AcsI	RAATTY	2 cut(s)	149, 287
AcuI	CTGAAG	1 cut(s)	207
AcyI	GRCGYC	4 cut(s)	402, 414, 432, 462
AdeI	CACNNNGTG	1 cut(s)	272
AfaI	GTAC	1 cut(s)	353
AfeI	AGCGCT	1 cut(s)	535
AfiI	CCNNNNNNNGG	3 cut(s)	225, 377, 452
AgsI	TTSAA	4 cut(s)	14, 131, 601, 710
AluBI	AGCT	2 cut(s)	191, 340
AluI	AGCT	2 cut(s)	191, 340
Alw26I	GTCTC	1 cut(s)	625
AlwI	GGATC	2 cut(s)	644, 657
Aor51HI	AGCGCT	1 cut(s)	535
AoxI	GGCC	7 cut(s)	113, 144, 368, 454, 484, 549, 582
ApeKI	GCWGC	2 cut(s)	357, 381
ApoI	RAATTY	2 cut(s)	149, 287
AspLEI	GCGC	2 cut(s)	416, 536
AspS9I	GGNCC	6 cut(s)	113, 368, 485, 550, 583, 701
AvaII	GGWCC	1 cut(s)	701
AxyI	CCTNAGG	1 cut(s)	204
BalI	TGGCCA	2 cut(s)	146, 456
BamHI	GGATCC	1 cut(s)	649
BanI	GGYRCC	2 cut(s)	167, 413
BbvI	GCAGC	2 cut(s)	344, 368
BccI	CCATC	3 cut(s)	100, 124, 721
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	2 cut(s)	393, 450
BfoI	RGCGCY	2 cut(s)	417, 537
BisI	GCNGC	3 cut(s)	358, 371, 382
BlsI	GCNGC	3 cut(s)	359, 372, 383
Bme18I	GGWCC	1 cut(s)	701
BmgT120I	GGNCC	6 cut(s)	113, 368, 485, 550, 583, 701
BmiI	GGNNCC	4 cut(s)	169, 415, 585, 651
BmsI	GCATC	1 cut(s)	336
BsaHI	GRCGYC	4 cut(s)	402, 414, 432, 462
BsaI	GGTCTC	1 cut(s)	625
BsaJI	CCNNGG	3 cut(s)	435, 481, 685
BsaXI	ACNNNNNCTCC	4 cut(s)	495, 525, 529, 559
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 377, 452
Bse21I	CCTNAGG	1 cut(s)	204
BseDI	CCNNGG	3 cut(s)	435, 481, 685
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	225, 377, 452
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	2 cut(s)	344, 368
BseYI	CCCAGC	1 cut(s)	110
BshFI	GGCC	7 cut(s)	115, 146, 370, 456, 486, 551, 584
BshNI	GGYRCC	2 cut(s)	167, 413
BsiSI	CCGG	1 cut(s)	548
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	3 cut(s)	225, 377, 452
BsmAI	GTCTC	1 cut(s)	625
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	7 cut(s)	115, 146, 370, 456, 486, 551, 584
Bso31I	GGTCTC	1 cut(s)	625
Bsp143I	GATC	1 cut(s)	649
Bsp19I	CCATGG	2 cut(s)	435, 481
BspACI	CCGC	4 cut(s)	23, 260, 315, 371
BspANI	GGCC	7 cut(s)	115, 146, 370, 456, 486, 551, 584
BspLI	GGNNCC	4 cut(s)	169, 415, 585, 651
BspPI	GGATC	2 cut(s)	644, 657
BspT107I	GGYRCC	2 cut(s)	167, 413
BspTNI	GGTCTC	1 cut(s)	625
BssECI	CCNNGG	3 cut(s)	435, 481, 685
BssMI	GATC	1 cut(s)	649
BssNI	GRCGYC	4 cut(s)	402, 414, 432, 462
BssT1I	CCWWGG	3 cut(s)	435, 481, 685
Bst4CI	ACNGT	1 cut(s)	636
BstACI	GRCGYC	4 cut(s)	402, 414, 432, 462
BstDEI	CTNAG	4 cut(s)	70, 204, 331, 579
BstDSI	CCRYGG	2 cut(s)	435, 481
BstENI	CCTNNNNNAGG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	10
BstH2I	RGCGCY	2 cut(s)	417, 537
BstHHI	GCGC	2 cut(s)	416, 536
BstKTI	GATC	1 cut(s)	652
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	1 cut(s)	649
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 197, 206, 440, 542, 581
BstV1I	GCAGC	2 cut(s)	344, 368
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
Bsu36I	CCTNAGG	1 cut(s)	204
BsuRI	GGCC	7 cut(s)	115, 146, 370, 456, 486, 551, 584
BtgI	CCRYGG	2 cut(s)	435, 481
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	183
CfoI	GCGC	2 cut(s)	416, 536
Cfr13I	GGNCC	6 cut(s)	113, 368, 485, 550, 583, 701
CseI	GACGC	4 cut(s)	410, 440, 470, 551
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	8 cut(s)	137, 257, 422, 428, 436, 458, 482, 717
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	4 cut(s)	70, 204, 331, 579
DinI	GGCGCC	1 cut(s)	415
DpnI	GATC	1 cut(s)	651
DpnII	GATC	1 cut(s)	649
DraI	TTTAAA	1 cut(s)	232
DraIII	CACNNNGTG	1 cut(s)	272
EaeI	YGGCCR	2 cut(s)	144, 454
Eco130I	CCWWGG	3 cut(s)	435, 481, 685
Eco31I	GGTCTC	1 cut(s)	625
Eco32I	GATATC	1 cut(s)	694
Eco47I	GGWCC	1 cut(s)	701
Eco47III	AGCGCT	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	204
EcoNI	CCTNNNNNAGG	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	583
EcoRI	GAATTC	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	694
EcoT14I	CCWWGG	3 cut(s)	435, 481, 685
EgeI	GGCGCC	1 cut(s)	415
EheI	GGCGCC	1 cut(s)	415
ErhI	CCWWGG	3 cut(s)	435, 481, 685
FaeI	CATG	8 cut(s)	140, 260, 425, 431, 439, 461, 485, 720
FalI	AAGNNNNNCTT	4 cut(s)	314, 346, 329, 361
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	8 cut(s)	136, 256, 421, 427, 435, 457, 481, 716
FblI	GTMKAC	1 cut(s)	721
Fnu4HI	GCNGC	3 cut(s)	358, 371, 382
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	358, 371, 382
FspBI	CTAG	2 cut(s)	393, 450
GlaI	GCGC	2 cut(s)	415, 535
GluI	GCNGC	3 cut(s)	358, 371, 382
GsaI	CCCAGC	1 cut(s)	114
HaeII	RGCGCY	2 cut(s)	417, 537
HaeIII	GGCC	7 cut(s)	115, 146, 370, 456, 486, 551, 584
HapII	CCGG	1 cut(s)	548
HgaI	GACGC	4 cut(s)	410, 440, 470, 551
HhaI	GCGC	2 cut(s)	416, 536
Hin1I	GRCGYC	4 cut(s)	402, 414, 432, 462
Hin1II	CATG	8 cut(s)	140, 260, 425, 431, 439, 461, 485, 720
Hin6I	GCGC	2 cut(s)	414, 534
HinP1I	GCGC	2 cut(s)	414, 534
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	2 cut(s)	252, 681
HpaII	CCGG	1 cut(s)	548
Hpy166II	GTNNAC	2 cut(s)	701, 722
Hpy188III	TCNNGA	1 cut(s)	616
Hpy8I	GTNNAC	2 cut(s)	701, 722
HpyAV	CCTTC	1 cut(s)	622
HpyCH4III	ACNGT	1 cut(s)	636
HpyCH4V	TGCA	3 cut(s)	297, 327, 644
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 197, 206, 440, 542, 581
HpyF3I	CTNAG	4 cut(s)	70, 204, 331, 579
Hsp92I	GRCGYC	4 cut(s)	402, 414, 432, 462
Hsp92II	CATG	8 cut(s)	140, 260, 425, 431, 439, 461, 485, 720
HspAI	GCGC	2 cut(s)	414, 534
KasI	GGCGCC	1 cut(s)	413
Kzo9I	GATC	1 cut(s)	649
LmnI	GCTCC	3 cut(s)	205, 448, 550
LpnPI	CCDG	5 cut(s)	96, 334, 399, 561, 619
Lsp1109I	GCAGC	2 cut(s)	344, 368
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	2 cut(s)	393, 450
MaeIII	GTNAC	3 cut(s)	97, 181, 511
MalI	GATC	1 cut(s)	651
MboI	GATC	1 cut(s)	649
MboII	GAAGA	1 cut(s)	337
MflI	RGATCY	1 cut(s)	649
MlsI	TGGCCA	2 cut(s)	146, 456
MluCI	AATT	5 cut(s)	62, 149, 287, 620, 705
MluNI	TGGCCA	2 cut(s)	146, 456
Mly113I	GGCGCC	1 cut(s)	414
MnlI	CCTC	5 cut(s)	103, 313, 456, 574, 597
Mox20I	TGGCCA	2 cut(s)	146, 456
MscI	TGGCCA	2 cut(s)	146, 456
MseI	TTAA	4 cut(s)	177, 224, 231, 730
MslI	CAYNNNNRTG	1 cut(s)	426
Msp20I	TGGCCA	2 cut(s)	146, 456
MspI	CCGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	6 cut(s)	29, 197, 206, 440, 542, 581
NarI	GGCGCC	1 cut(s)	414
NcoI	CCATGG	2 cut(s)	435, 481
NdeII	GATC	1 cut(s)	649
NlaIII	CATG	8 cut(s)	140, 260, 425, 431, 439, 461, 485, 720
NlaIV	GGNNCC	4 cut(s)	169, 415, 585, 651
NmuCI	GTSAC	3 cut(s)	97, 181, 511
PfeI	GAWTC	2 cut(s)	252, 681
PkrI	GCNGC	3 cut(s)	359, 372, 383
PluTI	GGCGCC	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	110
PspN4I	GGNNCC	4 cut(s)	169, 415, 585, 651
PspPI	GGNCC	6 cut(s)	113, 368, 485, 550, 583, 701
PsuI	RGATCY	1 cut(s)	649
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	4 cut(s)	177, 224, 231, 730
SatI	GCNGC	3 cut(s)	358, 371, 382
Sau3AI	GATC	1 cut(s)	649
Sau96I	GGNCC	6 cut(s)	113, 368, 485, 550, 583, 701
SetI	ASST	7 cut(s)	173, 193, 221, 230, 305, 342, 727
SfaNI	GCATC	1 cut(s)	336
SfoI	GGCGCC	1 cut(s)	415
SinI	GGWCC	1 cut(s)	701
SmiMI	CAYNNNNRTG	1 cut(s)	426
Sse9I	AATT	5 cut(s)	62, 149, 287, 620, 705
SsiI	CCGC	4 cut(s)	23, 260, 315, 371
SspDI	GGCGCC	1 cut(s)	413
SspMI	CTAG	2 cut(s)	393, 450
StyI	CCWWGG	3 cut(s)	435, 481, 685
TaaI	ACNGT	1 cut(s)	636
TaqI	TCGA	1 cut(s)	214
TasI	AATT	5 cut(s)	62, 149, 287, 620, 705
TauI	GCSGC	1 cut(s)	373
TfiI	GAWTC	2 cut(s)	252, 681
Tru1I	TTAA	4 cut(s)	177, 224, 231, 730
Tru9I	TTAA	4 cut(s)	177, 224, 231, 730
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	3 cut(s)	97, 181, 511
TseI	GCWGC	2 cut(s)	357, 381
Tsp45I	GTSAC	3 cut(s)	97, 181, 511
TspDTI	ATGAA	1 cut(s)	21
TspGWI	ACGGA	2 cut(s)	264, 657
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	701
XagI	CCTNNNNNAGG	1 cut(s)	223
XapI	RAATTY	2 cut(s)	149, 287
XmiI	GTMKAC	1 cut(s)	721
XspI	CTAG	2 cut(s)	393, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.