Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002041

Physical Location & Seq

Genomic Coordinates Reverse (-)

62971337 .. 62973144

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGATCGATCGGCGAGCTTGTTCCGAACTCAACCAACGAAGCCCGAAGCCATGAGGTCGCCGGAGTTGTGTTTTCGAGCCGGGTCCGAAAACACAAGGCTGCACCGCCTTGCTGCACCGCCGTGGAAGAGAATCGGCGCTAGAGGGCACCACGGGGACGACCGAGAAGGAGGAGGCGACCTGGCGACCAAGTTTCACGGCGGAGACCGCCGCGGTTGGCCGGAAAAGTCGGGTCGGATCGACCGGGTCCGGATCCGGGACCATCTTCCAAGAGCTGCAATTGTTGGAAGACCAAATGTTGTACCTAATAGTATAGATAGTAAGAAATGTTATCTCGAAGAAATTGTTCATCGTTCGTTGGCTATGATTATGGAAAATAAGTGCACTTATGTACAATGGGAAACAAGAGAGCTAGCTATAGTGGGAATGCTGTCAATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.67

Weight (kDa)

9.77

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002041)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g06723 FvH4_4g13932 FvH4_6g39332 FvH4_7g15611
pyrus_communis	pycom13g23550 pycom17g15180 pycom17g15210
rosa_chinensis	RchiOBHm_Chr1g0343001 RchiOBHm_Chr6g0295561
rosa_multiflora	Rmu_sc0000087.1_g000020 Rmu_sc0000161.1_g000059 Rmu_sc0000315.1_g000062 Rmu_sc0000588.1_g000018 Rmu_sc0000817.1_g000004 Rmu_sc0000982.1_g000052 Rmu_sc0001336.1_g000012 Rmu_sc0001913.1_g000050 Rmu_sc0002906.1_g000006 Rmu_sc0003044.1_g000025 Rmu_sc0003522.1_g000052 Rmu_sc0003628.1_g000013 Rmu_sc0003669.1_g000016 Rmu_sc0003758.1_g000007 Rmu_sc0003916.1_g000014 Rmu_sc0003941.1_g000008 Rmu_sc0004191.1_g000059 Rmu_sc0004298.1_g000020 Rmu_sc0004583.1_g000013 Rmu_sc0004890.1_g000015 Rmu_sc0004928.1_g000023 Rmu_sc0005187.1_g000007 Rmu_sc0006382.1_g000026 Rmu_sc0007727.1_g000008 Rmu_sc0007986.1_g000007 Rmu_sc0008198.1_g000008 Rmu_sc0010103.1_g000003 Rmu_sc0014117.1_g000002 Rmu_ssc0000141.1_g000015 Rmu_ssc0000295.1_g000027 Rmu_ssc0000442.1_g000036
rosa_roxburghii	Rroxscaffold_1G00042140 Rroxscaffold_3G00237020 Rroxscaffold_4G00323050 Rroxscaffold_4G00329660
rosa_wichuraiana	Rw1G031230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	147
AccII	CGCG	1 cut(s)	213
AccIII	TCCGGA	1 cut(s)	249
AciI	CCGC	6 cut(s)	106, 119, 201, 208, 211, 213
AclWI	GGATC	4 cut(s)	12, 245, 247, 260
AcoI	YGGCCR	1 cut(s)	218
AfaI	GTAC	2 cut(s)	303, 393
AfiI	CCNNNNNNNGG	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	180
AleI	CACNNNNGTG	1 cut(s)	121
AluBI	AGCT	4 cut(s)	18, 275, 412, 416
AluI	AGCT	4 cut(s)	18, 275, 412, 416
Alw21I	GWGCWC	1 cut(s)	386
Alw26I	GTCTC	1 cut(s)	198
Alw44I	GTGCAC	1 cut(s)	382
AlwI	GGATC	4 cut(s)	12, 245, 247, 260
Aor13HI	TCCGGA	1 cut(s)	249
AoxI	GGCC	1 cut(s)	218
ApaLI	GTGCAC	1 cut(s)	382
ApeKI	GCWGC	3 cut(s)	100, 113, 275
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	3 cut(s)	84, 247, 259
AsuC2I	CCSGG	3 cut(s)	82, 245, 257
AsuNHI	GCTAGC	1 cut(s)	412
AvaII	GGWCC	3 cut(s)	84, 247, 259
BaeGI	GKGCMC	2 cut(s)	150, 386
BamHI	GGATCC	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	386
BbvI	GCAGC	3 cut(s)	87, 100, 262
BccI	CCATC	1 cut(s)	270
BceAI	ACGGC	2 cut(s)	106, 214
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	3 cut(s)	82, 245, 257
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	2 cut(s)	141, 413
BfmI	CTRYAG	1 cut(s)	417
BfoI	RGCGCY	1 cut(s)	141
BisI	GCNGC	4 cut(s)	101, 114, 211, 276
BlsI	GCNGC	4 cut(s)	102, 115, 212, 277
Bme1390I	CCNGG	4 cut(s)	82, 182, 245, 257
Bme18I	GGWCC	3 cut(s)	84, 247, 259
BmgT120I	GGNCC	3 cut(s)	84, 247, 259
BmiI	GGNNCC	5 cut(s)	85, 149, 248, 254, 260
BmrFI	CCNGG	4 cut(s)	82, 182, 245, 257
BmtI	GCTAGC	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	295
BpuMI	CCSGG	3 cut(s)	82, 245, 257
Bsa29I	ATCGAT	1 cut(s)	7
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	3 cut(s)	122, 151, 211
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
BseAI	TCCGGA	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	182
BseCI	ATCGAT	1 cut(s)	7
BseDI	CCNNGG	3 cut(s)	122, 151, 211
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	186
BseSI	GKGCMC	2 cut(s)	150, 386
BseXI	GCAGC	3 cut(s)	87, 100, 262
BsgI	GTGCAG	2 cut(s)	86, 99
Bsh1236I	CGCG	1 cut(s)	213
Bsh1285I	CGRYCG	3 cut(s)	11, 163, 244
BshFI	GGCC	1 cut(s)	220
BshNI	GGYRCC	1 cut(s)	147
BshVI	ATCGAT	1 cut(s)	7
BsiEI	CGRYCG	3 cut(s)	11, 163, 244
BsiHKAI	GWGCWC	1 cut(s)	386
BsiSI	CCGG	6 cut(s)	62, 81, 221, 244, 250, 256
BslFI	GGGAC	2 cut(s)	170, 272
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	2 cut(s)	170, 272
BsmI	GAATGC	1 cut(s)	432
BsnI	GGCC	1 cut(s)	220
Bso31I	GGTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	2 cut(s)	150, 386
Bsp13I	TCCGGA	1 cut(s)	249
Bsp1407I	TGTACA	1 cut(s)	391
Bsp143I	GATC	4 cut(s)	4, 8, 237, 252
BspACI	CCGC	6 cut(s)	106, 119, 201, 208, 211, 213
BspANI	GGCC	1 cut(s)	220
BspDI	ATCGAT	1 cut(s)	7
BspEI	TCCGGA	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	5 cut(s)	85, 149, 248, 254, 260
BspOI	GCTAGC	1 cut(s)	416
BspPI	GGATC	4 cut(s)	12, 245, 247, 260
BspT107I	GGYRCC	1 cut(s)	147
BspTNI	GGTCTC	1 cut(s)	198
BsrGI	TGTACA	1 cut(s)	391
BssECI	CCNNGG	3 cut(s)	122, 151, 211
BssMI	GATC	4 cut(s)	4, 8, 237, 252
Bst2UI	CCWGG	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	16, 414
BstDSI	CCRYGG	3 cut(s)	122, 151, 211
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	4 cut(s)	7, 11, 240, 255
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	4 cut(s)	4, 8, 237, 252
BstMCI	CGRYCG	3 cut(s)	11, 163, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	4 cut(s)	80, 180, 243, 255
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	2 cut(s)	150, 386
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	3 cut(s)	87, 100, 262
BstV2I	GAAGAC	1 cut(s)	295
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
Bsu15I	ATCGAT	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	220
BsuTUI	ATCGAT	1 cut(s)	7
BtgI	CCRYGG	3 cut(s)	122, 151, 211
Cac8I	GCNNGC	2 cut(s)	16, 414
CfoI	GCGC	1 cut(s)	140
Cfr13I	GGNCC	3 cut(s)	84, 247, 259
Cfr42I	CCGCGG	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	302, 392
CviAII	CATG	1 cut(s)	52
CviQI	GTAC	2 cut(s)	302, 392
DpnI	GATC	4 cut(s)	6, 10, 239, 254
DpnII	GATC	4 cut(s)	4, 8, 237, 252
EaeI	YGGCCR	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	198
Eco47I	GGWCC	3 cut(s)	84, 247, 259
EcoRII	CCWGG	1 cut(s)	180
FaeI	CATG	1 cut(s)	55
FaiI	YATR	6 cut(s)	53, 314, 365, 371, 390, 419
FaqI	GGGAC	2 cut(s)	170, 272
FatI	CATG	1 cut(s)	51
Fnu4HI	GCNGC	4 cut(s)	101, 114, 211, 276
Fsp4HI	GCNGC	4 cut(s)	101, 114, 211, 276
FspBI	CTAG	2 cut(s)	141, 413
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	4 cut(s)	101, 114, 211, 276
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	6 cut(s)	62, 81, 221, 244, 250, 256
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	6 cut(s)	62, 81, 221, 244, 250, 256
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	3 cut(s)	26, 88, 237
Hpy188III	TCNNGA	2 cut(s)	250, 335
Hpy8I	GTNNAC	1 cut(s)	384
HpyAV	CCTTC	1 cut(s)	161
HpyCH4V	TGCA	4 cut(s)	103, 116, 278, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	55
HspAI	GCGC	1 cut(s)	138
Kpn2I	TCCGGA	1 cut(s)	249
KspI	CCGCGG	1 cut(s)	214
Kzo9I	GATC	4 cut(s)	4, 8, 237, 252
LpnPI	CCDG	8 cut(s)	75, 94, 167, 194, 234, 257, 263, 269
Lsp1109I	GCAGC	3 cut(s)	87, 100, 262
MaeI	CTAG	2 cut(s)	141, 413
MalI	GATC	4 cut(s)	6, 10, 239, 254
MboI	GATC	4 cut(s)	4, 8, 237, 252
MboII	GAAGA	4 cut(s)	139, 257, 300, 350
MfeI	CAATTG	2 cut(s)	279, 435
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	2 cut(s)	150, 386
MluCI	AATT	3 cut(s)	279, 342, 435
MmeI	TCCRAC	2 cut(s)	215, 265
MnlI	CCTC	4 cut(s)	48, 137, 164, 167
MroI	TCCGGA	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	121
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	6 cut(s)	62, 81, 221, 244, 250, 256
MspR9I	CCNGG	4 cut(s)	82, 182, 245, 257
MunI	CAATTG	2 cut(s)	279, 435
Mva1269I	GAATGC	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	207
NciI	CCSGG	3 cut(s)	82, 245, 257
NdeII	GATC	4 cut(s)	4, 8, 237, 252
NheI	GCTAGC	1 cut(s)	412
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	5 cut(s)	85, 149, 248, 254, 260
OliI	CACNNNNGTG	1 cut(s)	121
PctI	GAATGC	1 cut(s)	432
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	132
PflFI	GACNNNGTC	1 cut(s)	245
PfoI	TCCNGGA	1 cut(s)	255
PkrI	GCNGC	4 cut(s)	102, 115, 212, 277
Ple19I	CGATCG	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	5 cut(s)	85, 149, 248, 254, 260
PspPI	GGNCC	3 cut(s)	84, 247, 259
PsuI	RGATCY	1 cut(s)	252
PsyI	GACNNNGTC	1 cut(s)	245
PvuI	CGATCG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	303, 393
RsaNI	GTAC	2 cut(s)	302, 392
RseI	CAYNNNNRTG	1 cut(s)	121
SacII	CCGCGG	1 cut(s)	214
SatI	GCNGC	4 cut(s)	101, 114, 211, 276
Sau3AI	GATC	4 cut(s)	4, 8, 237, 252
Sau96I	GGNCC	3 cut(s)	84, 247, 259
ScrFI	CCNGG	4 cut(s)	82, 182, 245, 257
SduI	GDGCHC	2 cut(s)	150, 386
SetI	ASST	7 cut(s)	20, 59, 183, 277, 307, 414, 418
SfcI	CTRYAG	1 cut(s)	417
Sfr303I	CCGCGG	1 cut(s)	214
SgrBI	CCGCGG	1 cut(s)	214
SinI	GGWCC	3 cut(s)	84, 247, 259
SmiMI	CAYNNNNRTG	1 cut(s)	121
Sse9I	AATT	3 cut(s)	279, 342, 435
SsiI	CCGC	6 cut(s)	106, 119, 201, 208, 211, 213
SspMI	CTAG	2 cut(s)	141, 413
StyD4I	CCNGG	4 cut(s)	80, 180, 243, 255
TaqI	TCGA	4 cut(s)	7, 76, 240, 336
TaqII	GACCGA	1 cut(s)	177
TasI	AATT	3 cut(s)	279, 342, 435
TatI	WGTACW	1 cut(s)	391
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	132
TseI	GCWGC	3 cut(s)	100, 113, 275
TspDTI	ATGAA	1 cut(s)	338
Tth111I	GACNNNGTC	1 cut(s)	245
VneI	GTGCAC	1 cut(s)	382
VpaK11BI	GGWCC	3 cut(s)	84, 247, 259
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	2 cut(s)	141, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.