Rmu_sc0003916.1_g000014

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003916.1
Physical Location & Seq
Reverse (-)
44099 .. 44437
339 bp
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UTR
Exon/CDS
Intron
Rmu_sc0003916.1_g000014.1.cds

Sequence Viewer

Length: 339 bp
atggattctggagaactgcaatgtattgcggatagtacgactatgcacaccattctccaccataggcaattattcttagagatgttgcctacatattcctctgtgaccacgatgactgggccatccggtttagttcaaggacatggaatgtcccaattcctcttaccaaatcgccccttgataaacgtcgcagaagctctctacgctcctaaggcaaatcgaagcttattgagatttaaagatatcagagctaacggattccatgcgaaaatgcatactgagaatgaaaagagttcctttgcattgcctctaatgattgtgaacaaaagcgcatcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.41

Weight (kDa)

8.93

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AfaI GTAC 1 cut(s) 37
AgsI TTSAA 1 cut(s) 137
AluBI AGCT 3 cut(s) 197, 225, 251
AluI AGCT 3 cut(s) 197, 225, 251
AoxI GGCC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 210
BccI CCATC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 119
BmrI ACTGGG 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 126
BpmI CTGGAG 1 cut(s) 30
BsaWI WCCGGW 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 121
Bse21I CCTNAGG 1 cut(s) 210
Bse3DI GCAATG 2 cut(s) 26, 302
BseGI GGATG 1 cut(s) 122
BseMI GCAATG 2 cut(s) 26, 302
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 121
BshFI GGCC 1 cut(s) 121
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 136
BsnI GGCC 1 cut(s) 121
BspACI CCGC 1 cut(s) 29
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 1 cut(s) 271
BsrDI GCAATG 2 cut(s) 26, 302
BsrI ACTGG 1 cut(s) 121
BstDEI CTNAG 4 cut(s) 76, 210, 279, 336
BstF5I GGATG 1 cut(s) 122
BstHHI GCGC 1 cut(s) 332
BstMWI GCNNNNNNNGC 2 cut(s) 203, 212
Bsu36I CCTNAGG 1 cut(s) 210
BsuRI GGCC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 122
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 36
CviAII CATG 2 cut(s) 143, 263
CviJI RGCY 4 cut(s) 121, 197, 225, 251
CviKI_1 RGCY 4 cut(s) 121, 197, 225, 251
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 4 cut(s) 76, 210, 279, 336
DraI TTTAAA 1 cut(s) 238
Eco32I GATATC 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 210
EcoRV GATATC 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 276
FaeI CATG 2 cut(s) 146, 266
FaiI YATR 6 cut(s) 44, 63, 94, 144, 264, 276
FalI AAGNNNNNCTT 3 cut(s) 281, 313, 319
FaqI GGGAC 1 cut(s) 136
FatI CATG 2 cut(s) 142, 262
FokI GGATG 1 cut(s) 109
GlaI GCGC 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 121
HapII CCGG 1 cut(s) 126
HhaI GCGC 1 cut(s) 332
Hin1II CATG 2 cut(s) 146, 266
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HindIII AAGCTT 1 cut(s) 223
HinfI GANTC 2 cut(s) 5, 258
HpaII CCGG 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 1 cut(s) 9
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 1 cut(s) 191
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 4 cut(s) 19, 46, 274, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 212
HpyF3I CTNAG 4 cut(s) 76, 210, 279, 336
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 2 cut(s) 146, 266
HspAI GCGC 1 cut(s) 330
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 2 cut(s) 102, 139
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 103
MluCI AATT 2 cut(s) 68, 155
MnlI CCTC 3 cut(s) 109, 170, 318
Mph1103I ATGCAT 1 cut(s) 276
MseI TTAA 1 cut(s) 237
MspI CCGG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 203, 212
NlaIII CATG 2 cut(s) 146, 266
NmuCI GTSAC 1 cut(s) 103
NsiI ATGCAT 1 cut(s) 276
PfeI GAWTC 2 cut(s) 5, 258
PspPI GGNCC 1 cut(s) 119
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 237
Sau96I GGNCC 1 cut(s) 119
SetI ASST 4 cut(s) 189, 199, 227, 253
SgeI CNNG 8 cut(s) 21, 121, 129, 138, 149, 155, 190, 275
Sse9I AATT 2 cut(s) 68, 155
SsiI CCGC 1 cut(s) 29
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 220
TasI AATT 2 cut(s) 68, 155
TfiI GAWTC 2 cut(s) 5, 258
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 1 cut(s) 270
Zsp2I ATGCAT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.